Wall clock time and date at job start Tue Mar 31 2020 12:28:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52996 * 109.47173 * 2 1
4 4 N 1.46903 * 109.47557 * 181.83913 * 3 2 1
5 5 C 1.46897 * 110.99806 * 61.74397 * 4 3 2
6 6 C 1.53006 * 109.46795 * 62.38182 * 5 4 3
7 7 C 1.52998 * 109.46955 * 179.38223 * 6 5 4
8 8 C 1.50696 * 109.47319 * 180.02562 * 7 6 5
9 9 H 1.08005 * 119.99995 * 359.97438 * 8 7 6
10 10 C 1.37876 * 120.00359 * 179.97438 * 8 7 6
11 11 N 1.31510 * 120.00054 * 359.97438 * 10 8 7
12 12 Si 1.86801 * 120.00096 * 179.97438 * 10 8 7
13 13 H 1.48500 * 109.47130 * 359.97438 * 12 10 8
14 14 H 1.48496 * 109.47311 * 119.99938 * 12 10 8
15 15 H 1.48502 * 109.47342 * 240.00209 * 12 10 8
16 16 C 1.46905 * 110.99691 * 297.79877 * 4 3 2
17 17 H 1.08996 * 109.47265 * 60.41087 * 16 4 3
18 18 C 1.53000 * 109.47030 * 180.41834 * 16 4 3
19 19 C 1.50706 * 109.46634 * 300.41670 * 16 4 3
20 20 O 1.21286 * 120.00326 * 331.44036 * 19 16 4
21 21 N 1.34780 * 119.99512 * 151.45036 * 19 16 4
22 22 C 1.39927 * 119.99397 * 185.27644 * 21 19 16
23 23 C 1.38877 * 120.07112 * 325.13462 * 22 21 19
24 24 C 1.38114 * 119.92479 * 179.79598 * 23 22 21
25 25 C 1.38279 * 120.07298 * 0.48529 * 24 23 22
26 26 C 1.38281 * 120.14138 * 359.74375 * 25 24 23
27 27 C 1.38116 * 120.06901 * 0.02636 * 26 25 24
28 28 H 1.09008 * 109.46911 * 179.97438 * 1 2 3
29 29 H 1.08995 * 109.46956 * 299.99824 * 1 2 3
30 30 H 1.08993 * 109.47510 * 60.00223 * 1 2 3
31 31 H 1.09004 * 109.47141 * 240.00030 * 2 1 3
32 32 H 1.09003 * 109.47105 * 120.00078 * 2 1 3
33 33 H 1.09003 * 109.47385 * 61.83854 * 3 2 1
34 34 H 1.09000 * 109.47201 * 301.83739 * 3 2 1
35 35 H 1.09000 * 109.46928 * 182.37297 * 5 4 3
36 36 H 1.08996 * 109.47589 * 302.37678 * 5 4 3
37 37 H 1.08998 * 109.47113 * 299.37423 * 6 5 4
38 38 H 1.08998 * 109.47332 * 59.37888 * 6 5 4
39 39 H 1.09005 * 109.46934 * 299.99703 * 7 6 5
40 40 H 1.09002 * 109.47802 * 59.99437 * 7 6 5
41 41 H 0.96998 * 120.00382 * 180.02562 * 11 10 8
42 42 H 1.09002 * 109.46760 * 179.97438 * 18 16 4
43 43 H 1.08994 * 109.46958 * 299.99656 * 18 16 4
44 44 H 1.09002 * 109.47074 * 59.99310 * 18 16 4
45 45 H 0.96996 * 120.00558 * 5.27046 * 21 19 16
46 46 H 1.07997 * 120.03400 * 0.02562 * 23 22 21
47 47 H 1.08004 * 119.96131 * 180.23010 * 24 23 22
48 48 H 1.08004 * 119.93157 * 179.72872 * 25 24 23
49 49 H 1.08000 * 119.96736 * 179.97438 * 26 25 24
50 50 H 1.08004 * 120.03419 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5083 1.4428 -0.0444
5 6 3.9979 0.8066 -1.2747
6 6 3.5191 1.6068 -2.4878
7 6 4.0418 0.9529 -3.7685
8 6 3.5709 1.7413 -4.9634
9 1 2.9595 2.6206 -4.8233
10 6 3.9205 1.3402 -6.2353
11 7 4.6654 0.2699 -6.4059
12 14 3.3361 2.3171 -7.7164
13 1 2.5179 3.4687 -7.2584
14 1 4.5110 2.8150 -8.4759
15 1 2.5142 1.4440 -8.5924
16 6 4.0711 0.7903 1.1454
17 1 3.7290 -0.2436 1.1888
18 6 5.5989 0.8193 1.0683
19 6 3.6165 1.5222 2.3819
20 8 3.3639 2.7072 2.3268
21 7 3.4909 0.8599 3.5489
22 6 2.9643 1.5114 4.6698
23 6 3.2264 2.8592 4.8783
24 6 2.7016 3.5002 5.9834
25 6 1.9243 2.7991 6.8869
26 6 1.6654 1.4559 6.6847
27 6 2.1833 0.8102 5.5791
28 1 -0.3633 -1.0278 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5137 -0.8899
31 1 1.8933 -0.5138 -0.8900
32 1 1.8933 -0.5139 0.8900
33 1 1.7038 1.9467 0.9060
34 1 1.6500 1.9657 -0.8730
35 1 5.0875 0.7825 -1.2624
36 1 3.6126 -0.2111 -1.3356
37 1 2.4294 1.6216 -2.5062
38 1 3.8954 2.6276 -2.4213
39 1 5.1316 0.9380 -3.7502
40 1 3.6656 -0.0679 -3.8351
41 1 4.9116 -0.0121 -7.3007
42 1 6.0164 0.3356 1.9514
43 1 5.9276 0.2900 0.1740
44 1 5.9409 1.8534 1.0248
45 1 3.7653 -0.0682 3.6119
46 1 3.8368 3.4062 4.1751
47 1 2.9020 4.5492 6.1442
48 1 1.5187 3.3017 7.7526
49 1 1.0582 0.9110 7.3924
50 1 1.9811 -0.2390 5.4218
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000102400183.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:28:56
Heat of formation + Delta-G solvation = -15.277225 kcal
Electronic energy + Delta-G solvation = -26916.367464 eV
Core-core repulsion = 23329.192457 eV
Total energy + Delta-G solvation = -3587.175007 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 318.205 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-40.91971 -39.15877 -37.70008 -34.92452 -33.87121 -33.45533 -31.87800 -31.12810
-30.19060 -29.38584 -27.00352 -24.95985 -24.56747 -23.14431 -22.71293 -22.22499
-21.22780 -20.03975 -19.12071 -17.96001 -17.23062 -16.56689 -16.25269 -15.94409
-15.71652 -15.07454 -14.74606 -14.52482 -14.38350 -14.22267 -14.01809 -13.69506
-13.49853 -13.34752 -13.00678 -12.59905 -12.41471 -12.27999 -12.00319 -11.88313
-11.75430 -11.63501 -11.49620 -11.39525 -11.30675 -11.15855 -10.84587 -10.59939
-10.49886 -10.40292 -10.35150 -9.74839 -9.53262 -9.30809 -9.14242 -9.02225
-8.37490 -8.32393 -8.01454 -5.97881 -3.99278 1.04241 1.18182 2.43813
2.76088 3.32900 3.40387 3.45380 3.59911 4.03242 4.44158 4.49179
4.68279 4.72280 4.89692 4.91062 4.93484 5.05176 5.13853 5.17503
5.30136 5.32663 5.37159 5.38304 5.43946 5.57751 5.67125 5.71150
5.78893 5.84246 5.88366 5.93044 6.06253 6.10180 6.11667 6.13616
6.22383 6.27367 6.34062 6.36202 6.41681 6.72209 6.78076 6.82549
7.05194 7.16019 7.32595 7.35922 7.71085 7.85501 7.99484 8.02893
8.46804 9.08087 9.64708 11.13610
Molecular weight = 318.20amu
Principal moments of inertia in cm(-1)
A = 0.024016 B = 0.002415 C = 0.002368
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1165.618200 B =11593.328691 C =11819.627325
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.165 4.165
3 C 0.048 3.952
4 N -0.513 5.513
5 C 0.050 3.950
6 C -0.105 4.105
7 C 0.023 3.977
8 C -0.515 4.515
9 H 0.055 0.945
10 C 0.055 3.945
11 N -0.897 5.897
12 Si 0.890 3.110
13 H -0.273 1.273
14 H -0.284 1.284
15 H -0.285 1.285
16 C 0.066 3.934
17 H 0.061 0.939
18 C -0.146 4.146
19 C 0.521 3.479
20 O -0.494 6.494
21 N -0.680 5.680
22 C 0.150 3.850
23 C -0.122 4.122
24 C -0.102 4.102
25 C -0.140 4.140
26 C -0.103 4.103
27 C -0.149 4.149
28 H 0.051 0.949
29 H 0.049 0.951
30 H 0.059 0.941
31 H 0.073 0.927
32 H 0.052 0.948
33 H 0.072 0.928
34 H 0.088 0.912
35 H 0.076 0.924
36 H 0.034 0.966
37 H 0.048 0.952
38 H 0.057 0.943
39 H 0.015 0.985
40 H 0.013 0.987
41 H 0.259 0.741
42 H 0.060 0.940
43 H 0.079 0.921
44 H 0.073 0.927
45 H 0.409 0.591
46 H 0.141 0.859
47 H 0.124 0.876
48 H 0.121 0.879
49 H 0.124 0.876
50 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.627 -2.239 27.022 27.356
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.204 4.204
3 C -0.080 4.080
4 N -0.236 5.236
5 C -0.076 4.076
6 C -0.142 4.142
7 C -0.015 4.015
8 C -0.554 4.554
9 H 0.074 0.926
10 C -0.145 4.145
11 N -0.537 5.537
12 Si 0.719 3.281
13 H -0.197 1.197
14 H -0.210 1.210
15 H -0.211 1.211
16 C -0.046 4.046
17 H 0.079 0.921
18 C -0.204 4.204
19 C 0.307 3.693
20 O -0.366 6.366
21 N -0.327 5.327
22 C 0.056 3.944
23 C -0.143 4.143
24 C -0.121 4.121
25 C -0.159 4.159
26 C -0.122 4.122
27 C -0.170 4.170
28 H 0.070 0.930
29 H 0.068 0.932
30 H 0.078 0.922
31 H 0.092 0.908
32 H 0.071 0.929
33 H 0.090 0.910
34 H 0.106 0.894
35 H 0.094 0.906
36 H 0.052 0.948
37 H 0.067 0.933
38 H 0.075 0.925
39 H 0.034 0.966
40 H 0.031 0.969
41 H 0.069 0.931
42 H 0.079 0.921
43 H 0.097 0.903
44 H 0.093 0.907
45 H 0.244 0.756
46 H 0.158 0.842
47 H 0.142 0.858
48 H 0.139 0.861
49 H 0.142 0.858
50 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges -3.541 -0.981 26.746 26.998
hybrid contribution -0.494 -0.989 -0.845 1.391
sum -4.036 -1.969 25.901 26.288
Atomic orbital electron populations
1.21643 0.95410 1.01382 1.01860 1.22210 0.96918 0.99417 1.01900
1.22373 0.86928 0.95138 1.03579 1.62165 1.07405 1.53660 1.00389
1.22471 1.00326 0.96290 0.88554 1.21662 0.99767 0.99302 0.93516
1.19065 0.96327 0.95692 0.90370 1.21287 1.31733 1.11294 0.91077
0.92637 1.25022 0.95271 0.95171 0.99086 1.69969 1.37337 1.24379
1.21981 0.86557 0.78539 0.80168 0.82884 1.19716 1.21031 1.21096
1.21569 0.97359 0.96077 0.89614 0.92137 1.21880 0.91608 1.04105
1.02769 1.20873 0.76573 0.87992 0.83816 1.90701 1.46244 1.14923
1.84690 1.43669 1.63839 1.16010 1.09149 1.17803 0.95869 0.92960
0.87808 1.21387 1.01061 0.93860 0.97947 1.21102 0.97151 0.99939
0.93875 1.21137 1.00199 0.94600 0.99915 1.20922 0.99416 0.94776
0.97066 1.20909 0.99259 1.00404 0.96382 0.92996 0.93160 0.92222
0.90833 0.92947 0.90962 0.89352 0.90559 0.94760 0.93333 0.92458
0.96632 0.96884 0.93143 0.92125 0.90260 0.90749 0.75558 0.84166
0.85780 0.86120 0.85838 0.85865
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.69 9.91 37.16 0.37 -1.32 16
2 C -0.17 -2.12 5.25 -26.73 -0.14 -2.26 16
3 C 0.05 0.71 4.71 -3.82 -0.02 0.69 16
4 N -0.51 -7.80 4.33 -228.03 -0.99 -8.79 16
5 C 0.05 0.84 4.38 -3.82 -0.02 0.82 16
6 C -0.10 -2.17 4.97 -26.73 -0.13 -2.31 16
7 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16
8 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16
9 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16
10 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16
11 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16
12 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16
13 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16
14 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16
15 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16
16 C 0.07 0.80 2.11 -68.86 -0.15 0.65 16
17 H 0.06 0.63 6.42 -51.93 -0.33 0.30 16
18 C -0.15 -1.58 8.84 37.16 0.33 -1.25 16
19 C 0.52 6.54 5.79 -10.98 -0.06 6.48 16
20 O -0.49 -8.00 12.99 5.55 0.07 -7.93 16
21 N -0.68 -6.55 5.34 -9.86 -0.05 -6.61 16
22 C 0.15 1.58 6.31 -83.69 -0.53 1.05 16
23 C -0.12 -1.41 8.71 -39.39 -0.34 -1.75 16
24 C -0.10 -0.98 10.04 -39.61 -0.40 -1.38 16
25 C -0.14 -1.16 10.04 -39.55 -0.40 -1.55 16
26 C -0.10 -0.82 10.04 -39.61 -0.40 -1.22 16
27 C -0.15 -1.29 9.97 -39.39 -0.39 -1.68 16
28 H 0.05 0.55 8.14 -51.92 -0.42 0.12 16
29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16
31 H 0.07 1.05 6.30 -51.93 -0.33 0.72 16
32 H 0.05 0.60 6.56 -51.93 -0.34 0.26 16
33 H 0.07 1.12 6.33 -51.93 -0.33 0.79 16
34 H 0.09 1.43 6.29 -51.93 -0.33 1.11 16
35 H 0.08 1.25 5.89 -51.93 -0.31 0.95 16
36 H 0.03 0.56 6.19 -51.93 -0.32 0.24 16
37 H 0.05 1.00 6.45 -51.93 -0.33 0.67 16
38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16
39 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16
40 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16
41 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16
42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
43 H 0.08 0.87 6.21 -51.93 -0.32 0.55 16
44 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16
45 H 0.41 2.64 8.82 -40.82 -0.36 2.28 16
46 H 0.14 1.85 6.19 -52.49 -0.32 1.52 16
47 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16
48 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16
49 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16
50 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16
LS Contribution 392.47 15.07 5.91 5.91
Total: -1.00 -32.83 392.47 -10.40 -43.23
By element:
Atomic # 1 Polarization: 9.93 SS G_CDS: -8.24 Total: 1.69 kcal
Atomic # 6 Polarization: -15.30 SS G_CDS: -2.83 Total: -18.12 kcal
Atomic # 7 Polarization: -41.37 SS G_CDS: -0.30 Total: -41.68 kcal
Atomic # 8 Polarization: -8.00 SS G_CDS: 0.07 Total: -7.93 kcal
Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -32.83 -10.40 -43.23 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000102400183.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 27.957 kcal
(2) G-P(sol) polarization free energy of solvation -32.831 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.873 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.404 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.235 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.277 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds