Wall clock time and date at job start Tue Mar 31 2020 12:28:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52996 * 109.47173 * 2 1
4 4 N 1.46903 * 109.47557 * 181.83913 * 3 2 1
5 5 C 1.46897 * 110.99806 * 61.74397 * 4 3 2
6 6 C 1.53006 * 109.46795 * 62.38182 * 5 4 3
7 7 C 1.52998 * 109.46955 * 179.38223 * 6 5 4
8 8 C 1.50696 * 109.47319 * 180.02562 * 7 6 5
9 9 H 1.08005 * 119.99995 * 359.97438 * 8 7 6
10 10 C 1.37876 * 120.00359 * 179.97438 * 8 7 6
11 11 N 1.31510 * 120.00054 * 359.97438 * 10 8 7
12 12 Si 1.86801 * 120.00096 * 179.97438 * 10 8 7
13 13 H 1.48500 * 109.47130 * 359.97438 * 12 10 8
14 14 H 1.48496 * 109.47311 * 119.99938 * 12 10 8
15 15 H 1.48502 * 109.47342 * 240.00209 * 12 10 8
16 16 C 1.46905 * 110.99691 * 297.79877 * 4 3 2
17 17 H 1.08996 * 109.47265 * 60.41087 * 16 4 3
18 18 C 1.53000 * 109.47030 * 180.41834 * 16 4 3
19 19 C 1.50706 * 109.46634 * 300.41670 * 16 4 3
20 20 O 1.21286 * 120.00326 * 331.44036 * 19 16 4
21 21 N 1.34780 * 119.99512 * 151.45036 * 19 16 4
22 22 C 1.39927 * 119.99397 * 185.27644 * 21 19 16
23 23 C 1.38877 * 120.07112 * 325.13462 * 22 21 19
24 24 C 1.38114 * 119.92479 * 179.79598 * 23 22 21
25 25 C 1.38279 * 120.07298 * 0.48529 * 24 23 22
26 26 C 1.38281 * 120.14138 * 359.74375 * 25 24 23
27 27 C 1.38116 * 120.06901 * 0.02636 * 26 25 24
28 28 H 1.09008 * 109.46911 * 179.97438 * 1 2 3
29 29 H 1.08995 * 109.46956 * 299.99824 * 1 2 3
30 30 H 1.08993 * 109.47510 * 60.00223 * 1 2 3
31 31 H 1.09004 * 109.47141 * 240.00030 * 2 1 3
32 32 H 1.09003 * 109.47105 * 120.00078 * 2 1 3
33 33 H 1.09003 * 109.47385 * 61.83854 * 3 2 1
34 34 H 1.09000 * 109.47201 * 301.83739 * 3 2 1
35 35 H 1.09000 * 109.46928 * 182.37297 * 5 4 3
36 36 H 1.08996 * 109.47589 * 302.37678 * 5 4 3
37 37 H 1.08998 * 109.47113 * 299.37423 * 6 5 4
38 38 H 1.08998 * 109.47332 * 59.37888 * 6 5 4
39 39 H 1.09005 * 109.46934 * 299.99703 * 7 6 5
40 40 H 1.09002 * 109.47802 * 59.99437 * 7 6 5
41 41 H 0.96998 * 120.00382 * 180.02562 * 11 10 8
42 42 H 1.09002 * 109.46760 * 179.97438 * 18 16 4
43 43 H 1.08994 * 109.46958 * 299.99656 * 18 16 4
44 44 H 1.09002 * 109.47074 * 59.99310 * 18 16 4
45 45 H 0.96996 * 120.00558 * 5.27046 * 21 19 16
46 46 H 1.07997 * 120.03400 * 0.02562 * 23 22 21
47 47 H 1.08004 * 119.96131 * 180.23010 * 24 23 22
48 48 H 1.08004 * 119.93157 * 179.72872 * 25 24 23
49 49 H 1.08000 * 119.96736 * 179.97438 * 26 25 24
50 50 H 1.08004 * 120.03419 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5083 1.4428 -0.0444
5 6 3.9979 0.8066 -1.2747
6 6 3.5191 1.6068 -2.4878
7 6 4.0418 0.9529 -3.7685
8 6 3.5709 1.7413 -4.9634
9 1 2.9595 2.6206 -4.8233
10 6 3.9205 1.3402 -6.2353
11 7 4.6654 0.2699 -6.4059
12 14 3.3361 2.3171 -7.7164
13 1 2.5179 3.4687 -7.2584
14 1 4.5110 2.8150 -8.4759
15 1 2.5142 1.4440 -8.5924
16 6 4.0711 0.7903 1.1454
17 1 3.7290 -0.2436 1.1888
18 6 5.5989 0.8193 1.0683
19 6 3.6165 1.5222 2.3819
20 8 3.3639 2.7072 2.3268
21 7 3.4909 0.8599 3.5489
22 6 2.9643 1.5114 4.6698
23 6 3.2264 2.8592 4.8783
24 6 2.7016 3.5002 5.9834
25 6 1.9243 2.7991 6.8869
26 6 1.6654 1.4559 6.6847
27 6 2.1833 0.8102 5.5791
28 1 -0.3633 -1.0278 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5137 -0.8899
31 1 1.8933 -0.5138 -0.8900
32 1 1.8933 -0.5139 0.8900
33 1 1.7038 1.9467 0.9060
34 1 1.6500 1.9657 -0.8730
35 1 5.0875 0.7825 -1.2624
36 1 3.6126 -0.2111 -1.3356
37 1 2.4294 1.6216 -2.5062
38 1 3.8954 2.6276 -2.4213
39 1 5.1316 0.9380 -3.7502
40 1 3.6656 -0.0679 -3.8351
41 1 4.9116 -0.0121 -7.3007
42 1 6.0164 0.3356 1.9514
43 1 5.9276 0.2900 0.1740
44 1 5.9409 1.8534 1.0248
45 1 3.7653 -0.0682 3.6119
46 1 3.8368 3.4062 4.1751
47 1 2.9020 4.5492 6.1442
48 1 1.5187 3.3017 7.7526
49 1 1.0582 0.9110 7.3924
50 1 1.9811 -0.2390 5.4218
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000102400183.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:28:55
Heat of formation + Delta-G solvation = -34.978420 kcal
Electronic energy + Delta-G solvation = -26917.221772 eV
Core-core repulsion = 23329.192457 eV
Total energy + Delta-G solvation = -3588.029315 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 318.205 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-41.84631 -40.06128 -38.75261 -35.82477 -35.78933 -34.47867 -33.66058 -31.80691
-31.42340 -30.21516 -28.67112 -26.26670 -25.76116 -24.24409 -23.68744 -23.21218
-22.54692 -21.28012 -20.35576 -18.76623 -18.46327 -18.11781 -17.46807 -16.93324
-16.78591 -16.50018 -15.98992 -15.80219 -15.51029 -15.12992 -15.02286 -14.83370
-14.48296 -14.40477 -14.22952 -13.80476 -13.65109 -13.51195 -13.41399 -13.05550
-12.91785 -12.75793 -12.73755 -12.51525 -12.47301 -12.37022 -12.33013 -12.15731
-12.00230 -11.68782 -11.40915 -11.36566 -11.21066 -11.07792 -10.65798 -10.54026
-9.84342 -9.18649 -9.11796 -8.19952 -6.29745 0.32306 0.48600 1.38810
1.39421 1.50214 1.52815 1.91629 2.40869 2.89869 2.92408 3.13161
3.57134 3.85786 3.89092 4.02492 4.07373 4.10065 4.12231 4.22648
4.30768 4.32675 4.34729 4.54423 4.58047 4.61446 4.65682 4.66712
4.69917 4.74917 4.85224 4.93407 4.98342 5.07711 5.09033 5.13355
5.18699 5.23864 5.27594 5.36356 5.38797 5.41657 5.54096 5.58037
5.64831 5.76279 5.87523 6.00785 6.05625 6.12429 6.29182 6.43659
6.86503 7.11862 7.38928 8.91886
Molecular weight = 318.20amu
Principal moments of inertia in cm(-1)
A = 0.024016 B = 0.002415 C = 0.002368
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1165.618200 B =11593.328691 C =11819.627325
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.158 4.158
3 C 0.053 3.947
4 N -0.529 5.529
5 C 0.065 3.935
6 C -0.090 4.090
7 C 0.030 3.970
8 C -0.541 4.541
9 H 0.053 0.947
10 C 0.001 3.999
11 N -0.930 5.930
12 Si 0.961 3.039
13 H -0.266 1.266
14 H -0.277 1.277
15 H -0.276 1.276
16 C 0.067 3.933
17 H 0.087 0.913
18 C -0.144 4.144
19 C 0.523 3.477
20 O -0.538 6.538
21 N -0.663 5.663
22 C 0.129 3.871
23 C -0.149 4.149
24 C -0.115 4.115
25 C -0.140 4.140
26 C -0.103 4.103
27 C -0.146 4.146
28 H 0.066 0.934
29 H 0.056 0.944
30 H 0.047 0.953
31 H 0.059 0.941
32 H 0.072 0.928
33 H 0.066 0.934
34 H 0.066 0.934
35 H 0.080 0.920
36 H 0.042 0.958
37 H 0.046 0.954
38 H 0.043 0.957
39 H -0.006 1.006
40 H -0.005 1.005
41 H 0.264 0.736
42 H 0.092 0.908
43 H 0.078 0.922
44 H 0.053 0.947
45 H 0.426 0.574
46 H 0.113 0.887
47 H 0.132 0.868
48 H 0.145 0.855
49 H 0.154 0.846
50 H 0.149 0.851
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.725 -3.446 28.860 29.447
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.197 4.197
3 C -0.075 4.075
4 N -0.253 5.253
5 C -0.062 4.062
6 C -0.128 4.128
7 C -0.008 4.008
8 C -0.579 4.579
9 H 0.072 0.928
10 C -0.197 4.197
11 N -0.571 5.571
12 Si 0.786 3.214
13 H -0.190 1.190
14 H -0.203 1.203
15 H -0.202 1.202
16 C -0.045 4.045
17 H 0.105 0.895
18 C -0.201 4.201
19 C 0.310 3.690
20 O -0.413 6.413
21 N -0.310 5.310
22 C 0.036 3.964
23 C -0.169 4.169
24 C -0.133 4.133
25 C -0.158 4.158
26 C -0.121 4.121
27 C -0.166 4.166
28 H 0.085 0.915
29 H 0.075 0.925
30 H 0.067 0.933
31 H 0.078 0.922
32 H 0.091 0.909
33 H 0.084 0.916
34 H 0.084 0.916
35 H 0.098 0.902
36 H 0.060 0.940
37 H 0.065 0.935
38 H 0.062 0.938
39 H 0.013 0.987
40 H 0.013 0.987
41 H 0.072 0.928
42 H 0.110 0.890
43 H 0.096 0.904
44 H 0.072 0.928
45 H 0.264 0.736
46 H 0.131 0.869
47 H 0.150 0.850
48 H 0.163 0.837
49 H 0.171 0.829
50 H 0.166 0.834
Dipole moment (debyes) X Y Z Total
from point charges -4.638 -2.220 28.623 29.081
hybrid contribution -0.158 -0.604 -1.306 1.448
sum -4.796 -2.824 27.316 27.878
Atomic orbital electron populations
1.21628 0.94465 1.02300 1.01683 1.22130 0.97738 0.97740 1.02089
1.22252 0.86784 0.96312 1.02127 1.62004 1.07821 1.54608 1.00892
1.22163 1.00439 0.95760 0.87842 1.21394 0.99393 0.98634 0.93360
1.18933 0.94850 0.94796 0.92189 1.21692 1.32016 1.11647 0.92522
0.92846 1.25920 0.95262 0.96215 1.02271 1.70080 1.38230 1.25786
1.22989 0.85455 0.78271 0.78785 0.78890 1.19043 1.20266 1.20166
1.21659 0.97950 0.96874 0.88016 0.89520 1.21887 0.90784 1.03196
1.04265 1.20900 0.76054 0.87422 0.84586 1.90696 1.48411 1.16772
1.85391 1.43442 1.62907 1.16551 1.08132 1.17983 0.97063 0.92887
0.88514 1.21336 1.02209 0.94767 0.98574 1.21296 0.97551 1.00662
0.93809 1.21478 0.99210 0.95049 1.00071 1.21349 0.98898 0.94758
0.97141 1.21212 0.98137 1.01524 0.95760 0.91483 0.92453 0.93339
0.92236 0.90934 0.91602 0.91577 0.90167 0.94024 0.93482 0.93804
0.98737 0.98680 0.92759 0.88964 0.90366 0.92766 0.73571 0.86867
0.84960 0.83682 0.82858 0.83359
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.14 9.91 71.98 0.71 -2.43 16
2 C -0.16 -3.87 5.25 30.59 0.16 -3.71 16
3 C 0.05 1.58 4.71 86.30 0.41 1.99 16
4 N -0.53 -16.18 4.33 -875.36 -3.79 -19.97 16
5 C 0.06 2.20 4.38 86.31 0.38 2.57 16
6 C -0.09 -3.86 4.97 30.60 0.15 -3.71 16
7 C 0.03 1.59 4.97 29.85 0.15 1.74 16
8 C -0.54 -31.56 9.11 25.60 0.23 -31.33 16
9 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16
10 C 0.00 0.06 5.46 84.65 0.46 0.52 16
11 N -0.93 -56.79 13.29 21.45 0.28 -56.51 16
12 Si 0.96 45.19 29.54 68.60 2.03 47.22 16
13 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16
14 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16
15 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16
16 C 0.07 1.54 2.11 44.17 0.09 1.63 16
17 H 0.09 1.58 6.42 -2.39 -0.02 1.56 16
18 C -0.14 -2.97 8.84 71.98 0.64 -2.34 16
19 C 0.52 12.90 5.79 87.66 0.51 13.40 16
20 O -0.54 -18.01 12.99 -3.05 -0.04 -18.05 16
21 N -0.66 -11.78 5.34 -303.49 -1.62 -13.40 16
22 C 0.13 2.58 6.31 38.15 0.24 2.82 16
23 C -0.15 -3.49 8.71 22.39 0.19 -3.30 16
24 C -0.11 -2.16 10.04 22.25 0.22 -1.93 16
25 C -0.14 -2.00 10.04 22.29 0.22 -1.77 16
26 C -0.10 -1.31 10.04 22.25 0.22 -1.08 16
27 C -0.15 -2.11 9.97 22.39 0.22 -1.89 16
28 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16
29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16
30 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16
31 H 0.06 1.64 6.30 -2.38 -0.02 1.63 16
32 H 0.07 1.47 6.56 -2.39 -0.02 1.46 16
33 H 0.07 2.06 6.33 -2.39 -0.02 2.04 16
34 H 0.07 2.22 6.29 -2.39 -0.02 2.21 16
35 H 0.08 2.65 5.89 -2.39 -0.01 2.64 16
36 H 0.04 1.35 6.19 -2.39 -0.01 1.34 16
37 H 0.05 2.01 6.45 -2.39 -0.02 1.99 16
38 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16
39 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16
40 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16
41 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16
42 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16
43 H 0.08 1.64 6.21 -2.39 -0.01 1.63 16
44 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16
45 H 0.43 4.35 8.82 -92.71 -0.82 3.53 16
46 H 0.11 3.23 6.19 -2.91 -0.02 3.22 16
47 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16
48 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16
49 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16
50 H 0.15 1.34 8.06 -2.91 -0.02 1.31 16
Total: -1.00 -73.24 392.47 2.19 -71.05
By element:
Atomic # 1 Polarization: 18.37 SS G_CDS: 0.11 Total: 18.47 kcal
Atomic # 6 Polarization: -34.03 SS G_CDS: 5.22 Total: -28.81 kcal
Atomic # 7 Polarization: -84.75 SS G_CDS: -5.13 Total: -89.88 kcal
Atomic # 8 Polarization: -18.01 SS G_CDS: -0.04 Total: -18.05 kcal
Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal
Total: -73.24 2.19 -71.05 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000102400183.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.073 kcal
(2) G-P(sol) polarization free energy of solvation -73.240 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.167 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.189 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.051 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.978 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds