Wall clock time and date at job start Tue Mar 31 2020 13:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.50570 * 2 1 4 4 C 1.53096 * 109.50880 * 120.07980 * 2 1 3 5 5 N 1.47015 * 109.25752 * 63.13060 * 4 2 1 6 6 C 1.46895 * 111.00499 * 182.39167 * 5 4 2 7 7 C 1.50702 * 109.47417 * 170.00176 * 6 5 4 8 8 C 1.38292 * 119.92237 * 90.00284 * 7 6 5 9 9 C 1.38105 * 120.06995 * 179.97438 * 8 7 6 10 10 C 1.38906 * 119.92826 * 359.97438 * 9 8 7 11 11 N 1.39670 * 120.07526 * 179.97438 * 10 9 8 12 12 C 1.46497 * 120.00139 * 359.97438 * 11 10 9 13 13 C 1.46504 * 119.99906 * 179.97438 * 11 10 9 14 14 C 1.50700 * 109.47241 * 90.00095 * 13 11 10 15 15 H 1.08009 * 119.99748 * 359.97438 * 14 13 11 16 16 C 1.37871 * 120.00037 * 179.97438 * 14 13 11 17 17 N 1.31515 * 120.00399 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99824 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47146 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.46846 * 120.00523 * 18 16 14 21 21 H 1.48507 * 109.46832 * 240.00263 * 18 16 14 22 22 C 1.38916 * 119.85278 * 359.97438 * 10 9 8 23 23 C 1.38107 * 119.92024 * 0.02562 * 22 10 9 24 24 C 1.47022 * 110.74997 * 58.61820 * 5 4 2 25 25 C 1.53101 * 109.25408 * 301.38569 * 24 5 4 26 26 H 1.09001 * 109.50515 * 296.91173 * 25 24 5 27 27 C 1.53001 * 109.50431 * 176.78375 * 25 24 5 28 28 O 1.43010 * 109.54645 * 239.88952 * 2 1 3 29 29 H 1.09000 * 109.47473 * 299.91358 * 1 2 3 30 30 H 1.08993 * 109.47084 * 59.91896 * 1 2 3 31 31 H 1.09006 * 109.46478 * 179.91780 * 1 2 3 32 32 H 1.09003 * 109.51217 * 303.20417 * 4 2 1 33 33 H 1.08994 * 109.54699 * 183.08999 * 4 2 1 34 34 H 1.08998 * 109.47130 * 50.00275 * 6 5 4 35 35 H 1.09003 * 109.47348 * 290.00803 * 6 5 4 36 36 H 1.07992 * 119.96277 * 0.25748 * 8 7 6 37 37 H 1.08002 * 120.03500 * 179.97438 * 9 8 7 38 38 H 1.09001 * 109.47126 * 90.00335 * 12 11 10 39 39 H 1.08996 * 109.47420 * 210.00475 * 12 11 10 40 40 H 1.09006 * 109.47227 * 330.00550 * 12 11 10 41 41 H 1.09001 * 109.46629 * 209.99753 * 13 11 10 42 42 H 1.08995 * 109.47046 * 329.99667 * 13 11 10 43 43 H 0.96998 * 120.00036 * 179.97438 * 17 16 14 44 44 H 1.08000 * 120.03974 * 179.97438 * 22 10 9 45 45 H 1.07998 * 119.96014 * 180.02562 * 23 22 10 46 46 H 1.09000 * 109.50656 * 61.31777 * 24 5 4 47 47 H 1.09001 * 109.50579 * 181.45036 * 24 5 4 48 48 H 1.09003 * 109.47146 * 300.21934 * 27 25 24 49 49 H 1.09001 * 109.47215 * 60.21521 * 27 25 24 50 50 H 1.08994 * 109.47536 * 180.21480 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0413 -0.7233 1.2487 5 7 1.6119 -2.1287 1.2050 6 6 2.0345 -2.8462 2.4150 7 6 1.3749 -4.2007 2.4521 8 6 1.9989 -5.2881 1.8686 9 6 1.3974 -6.5309 1.9012 10 6 0.1645 -6.6880 2.5215 11 7 -0.4468 -7.9433 2.5558 12 6 0.2119 -9.0961 1.9367 13 6 -1.7469 -8.1072 3.2109 14 6 -2.8476 -7.8781 2.2074 15 1 -2.6031 -7.6343 1.1840 16 6 -4.1666 -7.9797 2.5957 17 7 -4.4644 -8.2761 3.8419 18 14 -5.5310 -7.6950 1.3518 19 1 -4.9362 -7.3778 0.0286 20 1 -6.3621 -8.9205 1.2396 21 1 -6.3792 -6.5608 1.7985 22 6 -0.4591 -5.5938 3.1076 23 6 0.1480 -4.3538 3.0713 24 6 2.1204 -2.7912 -0.0050 25 6 1.6084 -2.0470 -1.2411 26 1 0.5206 -2.1073 -1.2776 27 6 2.1987 -2.6831 -2.5013 28 8 2.0085 -0.6761 -1.1658 29 1 -0.3634 0.5125 0.8907 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3632 -1.0278 -0.0015 32 1 1.6325 -0.2455 2.1392 33 1 3.1298 -0.6760 1.2775 34 1 1.7423 -2.2756 3.2965 35 1 3.1175 -2.9696 2.4048 36 1 2.9598 -5.1663 1.3909 37 1 1.8851 -7.3797 1.4449 38 1 0.8489 -9.5884 2.6715 39 1 -0.5423 -9.7981 1.5813 40 1 0.8195 -8.7595 1.0966 41 1 -1.8263 -9.1173 3.6130 42 1 -1.8387 -7.3850 4.0221 43 1 -5.3924 -8.3472 4.1151 44 1 -1.4179 -5.7124 3.5903 45 1 -0.3361 -3.5028 3.5272 46 1 3.2103 -2.7769 0.0029 47 1 1.7695 -3.8229 -0.0298 48 1 3.2865 -2.6240 -2.4626 49 1 1.8935 -3.7279 -2.5581 50 1 1.8369 -2.1505 -3.3807 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127024664.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:53 Heat of formation + Delta-G solvation = -9.848662 kcal Electronic energy + Delta-G solvation = -27373.123753 eV Core-core repulsion = 23786.184146 eV Total energy + Delta-G solvation = -3586.939607 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.15040 -38.92362 -36.49600 -34.97932 -33.46105 -32.71913 -30.89577 -30.47107 -29.54459 -27.83830 -26.95238 -26.55822 -24.76295 -23.25660 -22.69360 -21.85872 -21.42897 -19.62015 -19.42983 -16.71136 -16.61876 -16.49535 -16.32624 -15.59501 -15.23700 -14.92545 -14.72961 -14.35688 -14.14708 -14.07697 -13.71503 -13.38920 -13.13988 -12.99621 -12.86319 -12.53493 -12.42298 -12.17041 -12.01780 -11.89962 -11.75984 -11.65431 -11.45326 -11.33246 -11.26380 -11.15167 -10.96302 -10.72754 -10.70289 -10.34558 -10.26283 -9.89642 -9.77172 -9.58646 -8.85754 -8.51973 -8.32722 -8.25479 -6.47896 -6.02902 -4.18486 2.09177 2.18779 3.24803 3.33063 3.38017 3.62328 3.86103 4.14091 4.40455 4.58292 4.70015 4.77028 4.89607 4.95217 5.11877 5.20594 5.23938 5.27237 5.29264 5.36492 5.47131 5.48029 5.54832 5.55450 5.66630 5.69071 5.76096 5.81512 5.85836 5.88644 5.98939 6.01444 6.03554 6.06816 6.25945 6.28382 6.37538 6.42393 6.61982 6.86744 6.96889 6.98208 7.06565 7.15508 7.20202 7.26202 7.36362 7.58864 7.80171 8.14293 8.25235 8.47323 8.90856 9.48611 10.94562 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.013145 B = 0.003342 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.583543 B = 8375.864537 C = 9124.569610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.091 3.909 3 H 0.100 0.900 4 C 0.023 3.977 5 N -0.527 5.527 6 C 0.112 3.888 7 C -0.168 4.168 8 C -0.068 4.068 9 C -0.222 4.222 10 C 0.242 3.758 11 N -0.615 5.615 12 C 0.098 3.902 13 C 0.249 3.751 14 C -0.530 4.530 15 H 0.060 0.940 16 C 0.062 3.938 17 N -0.895 5.895 18 Si 0.895 3.105 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.282 1.282 22 C -0.188 4.188 23 C -0.051 4.051 24 C 0.025 3.975 25 C 0.085 3.915 26 H 0.071 0.929 27 C -0.144 4.144 28 O -0.382 6.382 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.037 0.963 34 H 0.075 0.925 35 H 0.033 0.967 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.035 0.965 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.030 0.970 42 H 0.036 0.964 43 H 0.263 0.737 44 H 0.131 0.869 45 H 0.111 0.889 46 H 0.036 0.964 47 H 0.094 0.906 48 H 0.060 0.940 49 H 0.073 0.927 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.325 12.230 -5.936 19.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.034 3.966 3 H 0.118 0.882 4 C -0.106 4.106 5 N -0.252 5.252 6 C -0.015 4.015 7 C -0.171 4.171 8 C -0.088 4.088 9 C -0.245 4.245 10 C 0.135 3.865 11 N -0.321 5.321 12 C -0.046 4.046 13 C 0.129 3.871 14 C -0.569 4.569 15 H 0.078 0.922 16 C -0.140 4.140 17 N -0.534 5.534 18 Si 0.723 3.277 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.208 1.208 22 C -0.210 4.210 23 C -0.070 4.070 24 C -0.103 4.103 25 C 0.027 3.973 26 H 0.088 0.912 27 C -0.201 4.201 28 O -0.301 6.301 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.056 0.944 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.122 0.878 37 H 0.130 0.870 38 H 0.054 0.946 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.048 0.952 42 H 0.054 0.946 43 H 0.073 0.927 44 H 0.149 0.851 45 H 0.129 0.871 46 H 0.054 0.946 47 H 0.113 0.887 48 H 0.079 0.921 49 H 0.092 0.908 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.654 12.044 -5.951 19.155 hybrid contribution -0.208 -0.071 -0.354 0.417 sum 13.446 11.972 -6.305 19.076 Atomic orbital electron populations 1.22286 0.95450 1.03857 1.01784 1.22210 0.94483 0.95540 0.84411 0.88183 1.22781 0.98256 0.90207 0.99309 1.62243 1.59595 1.01047 1.02318 1.20834 0.96239 0.92530 0.91887 1.19098 0.97629 0.93552 1.06806 1.20503 0.98183 0.92171 0.97907 1.20513 0.97181 0.97811 1.08990 1.17952 0.90723 0.86133 0.91702 1.47104 1.21652 1.04433 1.58895 1.21469 0.97332 0.89210 0.96561 1.19290 0.77492 0.97521 0.92800 1.21614 0.90697 1.47928 0.96696 0.92206 1.24956 0.98719 0.94992 0.95367 1.69938 1.18888 1.48474 1.16107 0.86479 0.81817 0.77860 0.81554 1.19716 1.20959 1.20811 1.20893 1.02174 0.91747 1.06220 1.20616 0.93506 0.96119 0.96776 1.22855 0.97473 1.00076 0.89921 1.22181 0.99278 0.81380 0.94412 0.91158 1.21742 1.01494 1.00564 0.96344 1.87997 1.75645 1.23497 1.42962 0.91776 0.92615 0.90613 0.89802 0.94436 0.90617 0.94929 0.87832 0.86967 0.94639 0.91453 0.92721 0.95227 0.94617 0.92700 0.85084 0.87098 0.94600 0.88730 0.92123 0.90784 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.83 8.89 37.16 0.33 -1.50 16 2 C 0.09 0.95 3.92 -26.68 -0.10 0.84 16 3 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 4 C 0.02 0.24 5.06 -3.71 -0.02 0.22 16 5 N -0.53 -6.51 4.09 -235.75 -0.96 -7.47 16 6 C 0.11 1.40 5.11 -4.98 -0.03 1.37 16 7 C -0.17 -2.54 4.90 -104.59 -0.51 -3.06 16 8 C -0.07 -1.03 7.92 -39.61 -0.31 -1.35 16 9 C -0.22 -3.78 9.21 -39.38 -0.36 -4.14 16 10 C 0.24 4.84 6.55 -83.79 -0.55 4.29 16 11 N -0.62 -13.06 2.99 -181.00 -0.54 -13.60 16 12 C 0.10 1.71 10.19 59.85 0.61 2.32 16 13 C 0.25 6.20 4.91 -5.19 -0.03 6.17 16 14 C -0.53 -14.41 9.39 -34.44 -0.32 -14.74 16 15 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.90 -25.55 13.29 55.43 0.74 -24.81 16 18 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C -0.19 -3.76 9.21 -39.38 -0.36 -4.13 16 23 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 24 C 0.02 0.30 4.56 -3.71 -0.02 0.29 16 25 C 0.09 1.00 3.03 -26.68 -0.08 0.92 16 26 H 0.07 0.89 6.49 -51.93 -0.34 0.55 16 27 C -0.14 -1.41 9.57 37.16 0.36 -1.06 16 28 O -0.38 -4.68 10.28 -35.23 -0.36 -5.04 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.94 6.13 -51.93 -0.32 0.62 16 32 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 33 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.88 7.98 -51.93 -0.41 0.47 16 35 H 0.03 0.39 8.06 -51.93 -0.42 -0.03 16 36 H 0.10 1.34 8.01 -52.49 -0.42 0.92 16 37 H 0.11 1.73 6.14 -52.49 -0.32 1.41 16 38 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 40 H 0.05 0.84 6.20 -51.93 -0.32 0.52 16 41 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 42 H 0.04 0.94 6.20 -51.93 -0.32 0.62 16 43 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 44 H 0.13 2.91 6.14 -52.49 -0.32 2.59 16 45 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 46 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.09 1.27 6.01 -51.93 -0.31 0.95 16 48 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 388.11 15.07 5.85 5.85 Total: -1.00 -29.01 388.11 -10.72 -39.73 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -8.54 Total: 2.28 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -1.88 Total: -13.19 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -0.77 Total: -45.88 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.36 Total: -5.04 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.01 -10.72 -39.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127024664.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.881 kcal (2) G-P(sol) polarization free energy of solvation -29.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds