Wall clock time and date at job start Tue Mar 31 2020 13:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.50570 * 2 1 4 4 C 1.53096 * 109.50880 * 120.07980 * 2 1 3 5 5 N 1.47015 * 109.25752 * 63.13060 * 4 2 1 6 6 C 1.46895 * 111.00499 * 182.39167 * 5 4 2 7 7 C 1.50702 * 109.47417 * 170.00176 * 6 5 4 8 8 C 1.38292 * 119.92237 * 90.00284 * 7 6 5 9 9 C 1.38105 * 120.06995 * 179.97438 * 8 7 6 10 10 C 1.38906 * 119.92826 * 359.97438 * 9 8 7 11 11 N 1.39670 * 120.07526 * 179.97438 * 10 9 8 12 12 C 1.46497 * 120.00139 * 359.97438 * 11 10 9 13 13 C 1.46504 * 119.99906 * 179.97438 * 11 10 9 14 14 C 1.50700 * 109.47241 * 90.00095 * 13 11 10 15 15 H 1.08009 * 119.99748 * 359.97438 * 14 13 11 16 16 C 1.37871 * 120.00037 * 179.97438 * 14 13 11 17 17 N 1.31515 * 120.00399 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99824 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47146 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.46846 * 120.00523 * 18 16 14 21 21 H 1.48507 * 109.46832 * 240.00263 * 18 16 14 22 22 C 1.38916 * 119.85278 * 359.97438 * 10 9 8 23 23 C 1.38107 * 119.92024 * 0.02562 * 22 10 9 24 24 C 1.47022 * 110.74997 * 58.61820 * 5 4 2 25 25 C 1.53101 * 109.25408 * 301.38569 * 24 5 4 26 26 H 1.09001 * 109.50515 * 296.91173 * 25 24 5 27 27 C 1.53001 * 109.50431 * 176.78375 * 25 24 5 28 28 O 1.43010 * 109.54645 * 239.88952 * 2 1 3 29 29 H 1.09000 * 109.47473 * 299.91358 * 1 2 3 30 30 H 1.08993 * 109.47084 * 59.91896 * 1 2 3 31 31 H 1.09006 * 109.46478 * 179.91780 * 1 2 3 32 32 H 1.09003 * 109.51217 * 303.20417 * 4 2 1 33 33 H 1.08994 * 109.54699 * 183.08999 * 4 2 1 34 34 H 1.08998 * 109.47130 * 50.00275 * 6 5 4 35 35 H 1.09003 * 109.47348 * 290.00803 * 6 5 4 36 36 H 1.07992 * 119.96277 * 0.25748 * 8 7 6 37 37 H 1.08002 * 120.03500 * 179.97438 * 9 8 7 38 38 H 1.09001 * 109.47126 * 90.00335 * 12 11 10 39 39 H 1.08996 * 109.47420 * 210.00475 * 12 11 10 40 40 H 1.09006 * 109.47227 * 330.00550 * 12 11 10 41 41 H 1.09001 * 109.46629 * 209.99753 * 13 11 10 42 42 H 1.08995 * 109.47046 * 329.99667 * 13 11 10 43 43 H 0.96998 * 120.00036 * 179.97438 * 17 16 14 44 44 H 1.08000 * 120.03974 * 179.97438 * 22 10 9 45 45 H 1.07998 * 119.96014 * 180.02562 * 23 22 10 46 46 H 1.09000 * 109.50656 * 61.31777 * 24 5 4 47 47 H 1.09001 * 109.50579 * 181.45036 * 24 5 4 48 48 H 1.09003 * 109.47146 * 300.21934 * 27 25 24 49 49 H 1.09001 * 109.47215 * 60.21521 * 27 25 24 50 50 H 1.08994 * 109.47536 * 180.21480 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0413 -0.7233 1.2487 5 7 1.6119 -2.1287 1.2050 6 6 2.0345 -2.8462 2.4150 7 6 1.3749 -4.2007 2.4521 8 6 1.9989 -5.2881 1.8686 9 6 1.3974 -6.5309 1.9012 10 6 0.1645 -6.6880 2.5215 11 7 -0.4468 -7.9433 2.5558 12 6 0.2119 -9.0961 1.9367 13 6 -1.7469 -8.1072 3.2109 14 6 -2.8476 -7.8781 2.2074 15 1 -2.6031 -7.6343 1.1840 16 6 -4.1666 -7.9797 2.5957 17 7 -4.4644 -8.2761 3.8419 18 14 -5.5310 -7.6950 1.3518 19 1 -4.9362 -7.3778 0.0286 20 1 -6.3621 -8.9205 1.2396 21 1 -6.3792 -6.5608 1.7985 22 6 -0.4591 -5.5938 3.1076 23 6 0.1480 -4.3538 3.0713 24 6 2.1204 -2.7912 -0.0050 25 6 1.6084 -2.0470 -1.2411 26 1 0.5206 -2.1073 -1.2776 27 6 2.1987 -2.6831 -2.5013 28 8 2.0085 -0.6761 -1.1658 29 1 -0.3634 0.5125 0.8907 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3632 -1.0278 -0.0015 32 1 1.6325 -0.2455 2.1392 33 1 3.1298 -0.6760 1.2775 34 1 1.7423 -2.2756 3.2965 35 1 3.1175 -2.9696 2.4048 36 1 2.9598 -5.1663 1.3909 37 1 1.8851 -7.3797 1.4449 38 1 0.8489 -9.5884 2.6715 39 1 -0.5423 -9.7981 1.5813 40 1 0.8195 -8.7595 1.0966 41 1 -1.8263 -9.1173 3.6130 42 1 -1.8387 -7.3850 4.0221 43 1 -5.3924 -8.3472 4.1151 44 1 -1.4179 -5.7124 3.5903 45 1 -0.3361 -3.5028 3.5272 46 1 3.2103 -2.7769 0.0029 47 1 1.7695 -3.8229 -0.0298 48 1 3.2865 -2.6240 -2.4626 49 1 1.8935 -3.7279 -2.5581 50 1 1.8369 -2.1505 -3.3807 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127024664.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:52 Heat of formation + Delta-G solvation = -25.543409 kcal Electronic energy + Delta-G solvation = -27373.804328 eV Core-core repulsion = 23786.184146 eV Total energy + Delta-G solvation = -3587.620182 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.10415 -40.25303 -37.78802 -36.23458 -34.73317 -34.28705 -32.01810 -31.88361 -30.63948 -29.63005 -27.82790 -27.72167 -26.31186 -24.67856 -23.67795 -23.06125 -22.86102 -20.99655 -20.34066 -18.63830 -18.11015 -17.48872 -17.27854 -16.93566 -16.52808 -16.16562 -15.91651 -15.68771 -15.37399 -15.28897 -14.99824 -14.58827 -14.58166 -14.30524 -14.03174 -13.90026 -13.38861 -13.26469 -13.21157 -13.16235 -13.02483 -12.82306 -12.70663 -12.62574 -12.60544 -12.53766 -12.39281 -12.20015 -12.01753 -11.78548 -11.72067 -11.40643 -11.20775 -10.64829 -10.51499 -10.39033 -9.65105 -9.22836 -8.36312 -7.79695 -6.37569 0.71215 0.83292 1.35486 1.37402 1.49411 2.34027 2.63618 2.76342 2.88712 3.06067 3.30767 3.82180 3.93451 3.99779 4.05980 4.13256 4.21201 4.22573 4.30780 4.41462 4.44710 4.47400 4.50508 4.65602 4.68393 4.70565 4.71604 4.72724 4.83596 4.84975 4.87981 4.90975 5.01191 5.02696 5.05116 5.12155 5.15958 5.21192 5.25764 5.32825 5.43308 5.59394 5.65705 5.70307 5.90554 6.07190 6.08503 6.10857 6.22441 6.30460 6.50359 6.83002 6.94298 7.34486 8.83161 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.013145 B = 0.003342 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.583543 B = 8375.864537 C = 9124.569610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.087 3.913 3 H 0.122 0.878 4 C 0.025 3.975 5 N -0.541 5.541 6 C 0.115 3.885 7 C -0.154 4.154 8 C -0.061 4.061 9 C -0.216 4.216 10 C 0.213 3.787 11 N -0.632 5.632 12 C 0.098 3.902 13 C 0.267 3.733 14 C -0.540 4.540 15 H 0.048 0.952 16 C 0.014 3.986 17 N -0.926 5.926 18 Si 0.960 3.040 19 H -0.271 1.271 20 H -0.274 1.274 21 H -0.277 1.277 22 C -0.216 4.216 23 C -0.054 4.054 24 C 0.029 3.971 25 C 0.085 3.915 26 H 0.055 0.945 27 C -0.141 4.141 28 O -0.393 6.393 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.097 0.903 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.048 0.952 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.009 0.991 42 H 0.011 0.989 43 H 0.267 0.733 44 H 0.094 0.906 45 H 0.122 0.878 46 H 0.043 0.957 47 H 0.081 0.919 48 H 0.066 0.934 49 H 0.079 0.921 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.296 13.832 -7.346 22.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.030 3.970 3 H 0.140 0.860 4 C -0.103 4.103 5 N -0.266 5.266 6 C -0.011 4.011 7 C -0.156 4.156 8 C -0.080 4.080 9 C -0.239 4.239 10 C 0.109 3.891 11 N -0.340 5.340 12 C -0.045 4.045 13 C 0.145 3.855 14 C -0.579 4.579 15 H 0.067 0.933 16 C -0.186 4.186 17 N -0.566 5.566 18 Si 0.785 3.215 19 H -0.196 1.196 20 H -0.199 1.199 21 H -0.203 1.203 22 C -0.239 4.239 23 C -0.073 4.073 24 C -0.099 4.099 25 C 0.027 3.973 26 H 0.072 0.928 27 C -0.198 4.198 28 O -0.313 6.313 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.116 0.884 33 H 0.062 0.938 34 H 0.105 0.895 35 H 0.066 0.934 36 H 0.154 0.846 37 H 0.150 0.850 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.027 0.973 42 H 0.029 0.971 43 H 0.076 0.924 44 H 0.112 0.888 45 H 0.139 0.861 46 H 0.061 0.939 47 H 0.100 0.900 48 H 0.085 0.915 49 H 0.098 0.902 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 15.660 13.664 -7.370 22.051 hybrid contribution -0.735 -0.446 0.093 0.864 sum 14.925 13.218 -7.278 21.224 Atomic orbital electron populations 1.22231 0.95774 1.02440 1.02437 1.22409 0.94251 0.96472 0.83914 0.86037 1.22824 0.98646 0.88907 0.99882 1.62182 1.60226 1.02088 1.02135 1.20818 0.96752 0.90981 0.92583 1.19427 0.96405 0.95264 1.04551 1.20865 0.99077 0.91177 0.96840 1.20755 0.95811 0.99380 1.07914 1.18213 0.92150 0.85481 0.93299 1.46962 1.20847 1.06111 1.60054 1.21597 0.97225 0.88042 0.97617 1.18764 0.79443 0.95267 0.92005 1.21800 0.91816 1.47802 0.96461 0.93344 1.25756 1.01009 0.94650 0.97140 1.70039 1.19561 1.49268 1.17760 0.85476 0.78862 0.78075 0.79087 1.19563 1.19909 1.20289 1.20777 1.01553 0.93632 1.07943 1.20758 0.94367 0.95187 0.97010 1.22789 0.97712 0.99347 0.90075 1.22181 0.98494 0.81514 0.95124 0.92750 1.21735 1.01758 1.00758 0.95567 1.87988 1.75777 1.23639 1.43875 0.90667 0.92460 0.92967 0.88435 0.93844 0.89517 0.93355 0.84564 0.84982 0.92941 0.92570 0.90330 0.97308 0.97133 0.92394 0.88797 0.86052 0.93916 0.90035 0.91505 0.90228 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.29 8.89 71.98 0.64 -2.65 16 2 C 0.09 1.58 3.92 30.63 0.12 1.70 16 3 H 0.12 1.69 8.14 -2.38 -0.02 1.67 16 4 C 0.03 0.45 5.06 86.31 0.44 0.89 16 5 N -0.54 -11.97 4.09 -899.76 -3.68 -15.65 16 6 C 0.12 2.52 5.11 85.56 0.44 2.96 16 7 C -0.15 -4.34 4.90 -19.84 -0.10 -4.44 16 8 C -0.06 -1.67 7.92 22.25 0.18 -1.49 16 9 C -0.22 -6.99 9.21 22.40 0.21 -6.78 16 10 C 0.21 8.67 6.55 38.21 0.25 8.92 16 11 N -0.63 -27.69 2.99 -726.56 -2.17 -29.86 16 12 C 0.10 3.40 10.19 127.77 1.30 4.70 16 13 C 0.27 14.09 4.91 85.63 0.42 14.51 16 14 C -0.54 -30.54 9.39 25.60 0.24 -30.30 16 15 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 16 C 0.01 0.77 5.46 84.65 0.46 1.23 16 17 N -0.93 -54.57 13.29 21.45 0.28 -54.29 16 18 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 C -0.22 -9.06 9.21 22.40 0.21 -8.85 16 23 C -0.05 -1.84 9.69 22.25 0.22 -1.62 16 24 C 0.03 0.64 4.56 86.31 0.39 1.03 16 25 C 0.08 1.85 3.03 30.63 0.09 1.94 16 26 H 0.05 1.35 6.49 -2.39 -0.02 1.34 16 27 C -0.14 -2.50 9.57 71.98 0.69 -1.82 16 28 O -0.39 -8.80 10.28 -148.98 -1.53 -10.33 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.05 1.26 6.13 -2.38 -0.01 1.24 16 32 H 0.10 1.47 8.09 -2.39 -0.02 1.45 16 33 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.09 1.74 7.98 -2.39 -0.02 1.72 16 35 H 0.05 0.94 8.06 -2.39 -0.02 0.92 16 36 H 0.14 2.92 8.01 -2.91 -0.02 2.89 16 37 H 0.13 3.70 6.14 -2.91 -0.02 3.68 16 38 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.06 2.03 8.07 -2.39 -0.02 2.01 16 40 H 0.08 2.29 6.20 -2.38 -0.01 2.28 16 41 H 0.01 0.49 8.07 -2.39 -0.02 0.48 16 42 H 0.01 0.61 6.20 -2.39 -0.01 0.60 16 43 H 0.27 14.76 8.31 -92.71 -0.77 13.98 16 44 H 0.09 4.57 6.14 -2.91 -0.02 4.55 16 45 H 0.12 3.75 8.06 -2.91 -0.02 3.73 16 46 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.08 1.99 6.01 -2.39 -0.01 1.98 16 48 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 50 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -64.53 388.11 2.02 -62.51 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.90 Total: 21.28 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: 6.19 Total: -20.07 kcal Atomic # 7 Polarization: -94.23 SS G_CDS: -5.57 Total: -99.79 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -1.53 Total: -10.33 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -64.53 2.02 -62.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127024664.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.963 kcal (2) G-P(sol) polarization free energy of solvation -64.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds