Wall clock time and date at job start Tue Mar 31 2020 13:26:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.08999 * 109.50336 * 2 1
4 4 C 1.53101 * 109.50578 * 239.91129 * 2 1 3
5 5 N 1.47014 * 109.25440 * 183.21556 * 4 2 1
6 6 C 1.46900 * 110.99823 * 182.39213 * 5 4 2
7 7 C 1.50704 * 109.46854 * 170.00028 * 6 5 4
8 8 C 1.38285 * 119.92158 * 90.00307 * 7 6 5
9 9 C 1.38113 * 120.06969 * 180.02562 * 8 7 6
10 10 C 1.38909 * 119.92436 * 359.97438 * 9 8 7
11 11 N 1.39677 * 120.06958 * 179.97438 * 10 9 8
12 12 C 1.46499 * 120.00232 * 359.97438 * 11 10 9
13 13 C 1.46502 * 119.99706 * 180.02562 * 11 10 9
14 14 C 1.50691 * 109.47318 * 269.99800 * 13 11 10
15 15 H 1.08001 * 119.99896 * 0.02562 * 14 13 11
16 16 C 1.37874 * 120.00413 * 179.97438 * 14 13 11
17 17 N 1.31516 * 119.99924 * 0.02562 * 16 14 13
18 18 Si 1.86799 * 120.00255 * 180.02562 * 16 14 13
19 19 H 1.48498 * 109.47163 * 359.97438 * 18 16 14
20 20 H 1.48495 * 109.47207 * 120.00516 * 18 16 14
21 21 H 1.48500 * 109.47187 * 240.00340 * 18 16 14
22 22 C 1.38904 * 119.85370 * 0.25876 * 10 9 8
23 23 C 1.38113 * 119.92225 * 359.48721 * 22 10 9
24 24 C 1.47014 * 110.75341 * 58.61865 * 5 4 2
25 25 C 1.53104 * 109.25761 * 301.38064 * 24 5 4
26 26 H 1.08994 * 109.54302 * 176.80595 * 25 24 5
27 27 C 1.52996 * 109.50734 * 296.91554 * 25 24 5
28 28 O 1.43009 * 109.50546 * 120.12848 * 2 1 3
29 29 H 1.08997 * 109.47127 * 180.08506 * 1 2 3
30 30 H 1.08999 * 109.47112 * 300.08979 * 1 2 3
31 31 H 1.09000 * 109.47024 * 60.09262 * 1 2 3
32 32 H 1.08997 * 109.50737 * 63.28541 * 4 2 1
33 33 H 1.08991 * 109.50879 * 303.15083 * 4 2 1
34 34 H 1.08999 * 109.47247 * 50.00394 * 6 5 4
35 35 H 1.08997 * 109.47312 * 290.00089 * 6 5 4
36 36 H 1.07994 * 119.96562 * 359.97438 * 8 7 6
37 37 H 1.07995 * 120.03215 * 180.02562 * 9 8 7
38 38 H 1.09002 * 109.47391 * 270.00190 * 12 11 10
39 39 H 1.09001 * 109.46813 * 150.00246 * 12 11 10
40 40 H 1.09004 * 109.47041 * 30.00373 * 12 11 10
41 41 H 1.09002 * 109.47278 * 29.99971 * 13 11 10
42 42 H 1.09006 * 109.46998 * 149.99492 * 13 11 10
43 43 H 0.96995 * 120.00442 * 179.97438 * 17 16 14
44 44 H 1.07999 * 120.04066 * 179.72393 * 22 10 9
45 45 H 1.08005 * 119.95949 * 180.25300 * 23 22 10
46 46 H 1.09001 * 109.50986 * 61.31298 * 24 5 4
47 47 H 1.08998 * 109.50855 * 181.45261 * 24 5 4
48 48 H 1.09001 * 109.47244 * 179.78243 * 27 25 24
49 49 H 1.08993 * 109.47179 * 299.78416 * 27 25 24
50 50 H 1.09006 * 109.47108 * 59.78214 * 27 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8940 1.0274 0.0000
4 6 2.0413 -0.7235 -1.2487
5 7 3.5093 -0.7880 -1.2047
6 6 4.0447 -1.4260 -2.4148
7 6 5.5417 -1.2564 -2.4517
8 6 6.3583 -2.2076 -1.8680
9 6 7.7306 -2.0549 -1.8996
10 6 8.2902 -0.9446 -2.5189
11 7 9.6777 -0.7869 -2.5521
12 6 10.5443 -1.7928 -1.9329
13 6 10.2662 0.3850 -3.2053
14 6 10.5194 0.0760 -4.6583
15 1 10.2668 -0.8960 -5.0556
16 6 11.0726 1.0344 -5.4807
17 7 11.3798 2.2181 -4.9970
18 14 11.3858 0.6515 -7.2820
19 1 10.9563 -0.7396 -7.5744
20 1 10.6158 1.5965 -8.1301
21 1 12.8351 0.7931 -7.5735
22 6 7.4669 0.0114 -3.0999
23 6 6.0956 -0.1501 -3.0694
24 6 3.9640 -1.4884 0.0053
25 6 3.4335 -0.7572 1.2414
26 1 3.7201 -1.3042 2.1395
27 6 4.0229 0.6537 1.2926
28 8 2.0076 -0.6766 1.1659
29 1 -0.3633 -1.0276 0.0015
30 1 -0.3633 0.5152 0.8892
31 1 -0.3633 0.5124 -0.8908
32 1 1.7274 -0.1787 -2.1391
33 1 1.6332 -1.7338 -1.2766
34 1 3.6045 -0.9600 -3.2963
35 1 3.7995 -2.4880 -2.4044
36 1 5.9225 -3.0703 -1.3863
37 1 8.3677 -2.7984 -1.4439
38 1 10.7220 -1.5273 -0.8907
39 1 11.4947 -1.8308 -2.4653
40 1 10.0610 -2.7686 -1.9820
41 1 9.5792 1.2276 -3.1274
42 1 11.2080 0.6378 -2.7180
43 1 11.7693 2.8923 -5.5754
44 1 7.8986 0.8780 -3.5784
45 1 5.4550 0.5908 -3.5245
46 1 3.5866 -2.5110 -0.0026
47 1 5.0536 -1.5019 0.0303
48 1 3.6418 1.1751 2.1707
49 1 5.1095 0.5917 1.3500
50 1 3.7372 1.1997 0.3934
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000127024849.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:26:56
Heat of formation + Delta-G solvation = -9.868577 kcal
Electronic energy + Delta-G solvation = -27188.778352 eV
Core-core repulsion = 23601.837881 eV
Total energy + Delta-G solvation = -3586.940470 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 318.205 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-40.17648 -38.92675 -36.50886 -34.98067 -33.50964 -32.72583 -30.89179 -30.47404
-29.61085 -27.84031 -26.95005 -26.55736 -24.69904 -23.32602 -22.79404 -21.88433
-21.38261 -19.59913 -19.47362 -16.78067 -16.53009 -16.44823 -16.40145 -15.58332
-15.37775 -14.93417 -14.66380 -14.48273 -14.20103 -13.96822 -13.68638 -13.50598
-13.05489 -13.01406 -12.88378 -12.64124 -12.35908 -12.19700 -12.09417 -11.91799
-11.78463 -11.68522 -11.43176 -11.38514 -11.26867 -11.16754 -10.94945 -10.71890
-10.69578 -10.39042 -10.27308 -9.90330 -9.76444 -9.62495 -8.85795 -8.52524
-8.34524 -8.26129 -6.48058 -6.03294 -4.19060 2.09145 2.18819 3.23896
3.32138 3.36939 3.58797 3.83998 4.13692 4.39745 4.59056 4.63214
4.77525 4.85942 4.96326 5.04804 5.19927 5.21877 5.25486 5.26784
5.33950 5.38596 5.44728 5.54535 5.56319 5.64794 5.67799 5.77371
5.79623 5.82975 5.86707 5.91544 5.99924 6.01945 6.06863 6.25926
6.29355 6.37252 6.42332 6.61898 6.85886 6.94803 6.97881 7.05297
7.13081 7.19799 7.26149 7.36366 7.58773 7.79595 8.13949 8.25102
8.47299 8.90305 9.47905 10.94049
Molecular weight = 318.20amu
Principal moments of inertia in cm(-1)
A = 0.020609 B = 0.002746 C = 0.002638
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1358.281604 B =10196.046173 C =10613.364787
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C 0.086 3.914
3 H 0.070 0.930
4 C 0.023 3.977
5 N -0.527 5.527
6 C 0.111 3.889
7 C -0.167 4.167
8 C -0.068 4.068
9 C -0.222 4.222
10 C 0.243 3.757
11 N -0.616 5.616
12 C 0.098 3.902
13 C 0.249 3.751
14 C -0.530 4.530
15 H 0.059 0.941
16 C 0.061 3.939
17 N -0.895 5.895
18 Si 0.896 3.104
19 H -0.273 1.273
20 H -0.282 1.282
21 H -0.283 1.283
22 C -0.188 4.188
23 C -0.050 4.050
24 C 0.023 3.977
25 C 0.091 3.909
26 H 0.101 0.899
27 C -0.174 4.174
28 O -0.381 6.381
29 H 0.060 0.940
30 H 0.064 0.936
31 H 0.071 0.929
32 H 0.083 0.917
33 H 0.038 0.962
34 H 0.076 0.924
35 H 0.033 0.967
36 H 0.104 0.896
37 H 0.112 0.888
38 H 0.035 0.965
39 H 0.067 0.933
40 H 0.054 0.946
41 H 0.036 0.964
42 H 0.030 0.970
43 H 0.263 0.737
44 H 0.131 0.869
45 H 0.111 0.889
46 H 0.036 0.964
47 H 0.095 0.905
48 H 0.053 0.947
49 H 0.066 0.934
50 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.266 -6.235 10.426 21.111
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C 0.028 3.972
3 H 0.088 0.912
4 C -0.105 4.105
5 N -0.252 5.252
6 C -0.015 4.015
7 C -0.170 4.170
8 C -0.088 4.088
9 C -0.245 4.245
10 C 0.135 3.865
11 N -0.321 5.321
12 C -0.046 4.046
13 C 0.129 3.871
14 C -0.569 4.569
15 H 0.078 0.922
16 C -0.141 4.141
17 N -0.534 5.534
18 Si 0.723 3.277
19 H -0.197 1.197
20 H -0.208 1.208
21 H -0.210 1.210
22 C -0.210 4.210
23 C -0.070 4.070
24 C -0.105 4.105
25 C 0.033 3.967
26 H 0.119 0.881
27 C -0.231 4.231
28 O -0.301 6.301
29 H 0.079 0.921
30 H 0.083 0.917
31 H 0.090 0.910
32 H 0.101 0.899
33 H 0.056 0.944
34 H 0.094 0.906
35 H 0.051 0.949
36 H 0.122 0.878
37 H 0.130 0.870
38 H 0.054 0.946
39 H 0.085 0.915
40 H 0.073 0.927
41 H 0.054 0.946
42 H 0.048 0.952
43 H 0.073 0.927
44 H 0.149 0.851
45 H 0.129 0.871
46 H 0.054 0.946
47 H 0.114 0.886
48 H 0.072 0.928
49 H 0.085 0.915
50 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -16.871 -5.618 10.517 20.659
hybrid contribution 0.310 -0.908 -1.358 1.663
sum -16.561 -6.527 9.159 20.018
Atomic orbital electron populations
1.21745 0.93154 1.02731 1.02512 1.22135 0.94356 0.96187 0.84527
0.91238 1.22809 0.88588 0.99869 0.99218 1.62251 1.07519 1.53138
1.02281 1.20840 0.92574 0.96278 0.91853 1.19086 0.93239 0.97985
1.06706 1.20503 0.92832 0.97488 0.97951 1.20517 0.94866 0.99676
1.09451 1.17946 0.84238 0.92688 0.91597 1.47106 1.01534 1.25021
1.58449 1.21470 0.95150 0.91484 0.96469 1.19291 0.93674 0.82343
0.91813 1.21608 1.41238 0.99624 0.94454 0.92237 1.24965 0.95374
0.94875 0.98889 1.69938 1.43005 1.04392 1.36038 0.86471 0.77854
0.78530 0.84806 1.19742 1.20825 1.20952 1.20889 0.92834 1.01359
1.05954 1.20615 0.94042 0.95733 0.96608 1.22832 1.02257 0.95190
0.90220 1.22260 0.80380 0.96674 0.97398 0.88096 1.22259 1.01608
0.96792 1.02483 1.88000 1.21131 1.78134 1.42819 0.92070 0.91715
0.91031 0.89889 0.94383 0.90579 0.94892 0.87836 0.86972 0.94627
0.91462 0.92722 0.94589 0.95215 0.92686 0.85102 0.87104 0.94606
0.88640 0.92752 0.91480 0.90890
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.11 9.57 37.16 0.36 -0.76 16
2 C 0.09 0.86 3.02 -26.68 -0.08 0.78 16
3 H 0.07 0.72 6.50 -51.93 -0.34 0.39 16
4 C 0.02 0.24 4.93 -3.71 -0.02 0.22 16
5 N -0.53 -6.29 4.08 -235.75 -0.96 -7.25 16
6 C 0.11 1.39 5.11 -4.97 -0.03 1.36 16
7 C -0.17 -2.53 4.90 -104.59 -0.51 -3.04 16
8 C -0.07 -1.04 7.92 -39.61 -0.31 -1.35 16
9 C -0.22 -3.78 9.21 -39.38 -0.36 -4.15 16
10 C 0.24 4.84 6.55 -83.79 -0.55 4.29 16
11 N -0.62 -13.08 2.99 -181.00 -0.54 -13.62 16
12 C 0.10 1.71 10.19 59.85 0.61 2.32 16
13 C 0.25 6.20 4.92 -5.20 -0.03 6.17 16
14 C -0.53 -14.40 9.39 -34.45 -0.32 -14.72 16
15 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16
16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16
17 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16
18 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16
19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16
20 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16
21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
22 C -0.19 -3.76 9.21 -39.38 -0.36 -4.12 16
23 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16
24 C 0.02 0.27 4.68 -3.71 -0.02 0.25 16
25 C 0.09 0.99 3.92 -26.68 -0.10 0.88 16
26 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16
27 C -0.17 -1.90 8.88 37.16 0.33 -1.57 16
28 O -0.38 -4.47 10.28 -35.23 -0.36 -4.83 16
29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16
30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16
31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16
32 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16
33 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16
34 H 0.08 0.90 7.98 -51.93 -0.41 0.48 16
35 H 0.03 0.40 8.06 -51.93 -0.42 -0.02 16
36 H 0.10 1.34 8.00 -52.49 -0.42 0.92 16
37 H 0.11 1.73 6.14 -52.49 -0.32 1.41 16
38 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16
39 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16
40 H 0.05 0.84 6.20 -51.93 -0.32 0.52 16
41 H 0.04 0.95 6.19 -51.93 -0.32 0.63 16
42 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16
43 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16
44 H 0.13 2.91 6.14 -52.49 -0.32 2.58 16
45 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16
46 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16
47 H 0.10 1.20 6.01 -51.93 -0.31 0.89 16
48 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16
49 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
50 H 0.07 0.88 6.13 -51.93 -0.32 0.56 16
LS Contribution 388.08 15.07 5.85 5.85
Total: -1.00 -28.96 388.08 -10.72 -39.68
By element:
Atomic # 1 Polarization: 10.41 SS G_CDS: -8.54 Total: 1.87 kcal
Atomic # 6 Polarization: -11.20 SS G_CDS: -1.88 Total: -13.08 kcal
Atomic # 7 Polarization: -44.92 SS G_CDS: -0.77 Total: -45.69 kcal
Atomic # 8 Polarization: -4.47 SS G_CDS: -0.36 Total: -4.83 kcal
Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal
Total LS contribution 5.85 Total: 5.85 kcal
Total: -28.96 -10.72 -39.68 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000127024849.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.816 kcal
(2) G-P(sol) polarization free energy of solvation -28.962 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.854 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.722 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.685 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.869 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds