Wall clock time and date at job start Tue Mar 31 2020 13:26:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.08999 * 109.50336 * 2 1
4 4 C 1.53101 * 109.50578 * 239.91129 * 2 1 3
5 5 N 1.47014 * 109.25440 * 183.21556 * 4 2 1
6 6 C 1.46900 * 110.99823 * 182.39213 * 5 4 2
7 7 C 1.50704 * 109.46854 * 170.00028 * 6 5 4
8 8 C 1.38285 * 119.92158 * 90.00307 * 7 6 5
9 9 C 1.38113 * 120.06969 * 180.02562 * 8 7 6
10 10 C 1.38909 * 119.92436 * 359.97438 * 9 8 7
11 11 N 1.39677 * 120.06958 * 179.97438 * 10 9 8
12 12 C 1.46499 * 120.00232 * 359.97438 * 11 10 9
13 13 C 1.46502 * 119.99706 * 180.02562 * 11 10 9
14 14 C 1.50691 * 109.47318 * 269.99800 * 13 11 10
15 15 H 1.08001 * 119.99896 * 0.02562 * 14 13 11
16 16 C 1.37874 * 120.00413 * 179.97438 * 14 13 11
17 17 N 1.31516 * 119.99924 * 0.02562 * 16 14 13
18 18 Si 1.86799 * 120.00255 * 180.02562 * 16 14 13
19 19 H 1.48498 * 109.47163 * 359.97438 * 18 16 14
20 20 H 1.48495 * 109.47207 * 120.00516 * 18 16 14
21 21 H 1.48500 * 109.47187 * 240.00340 * 18 16 14
22 22 C 1.38904 * 119.85370 * 0.25876 * 10 9 8
23 23 C 1.38113 * 119.92225 * 359.48721 * 22 10 9
24 24 C 1.47014 * 110.75341 * 58.61865 * 5 4 2
25 25 C 1.53104 * 109.25761 * 301.38064 * 24 5 4
26 26 H 1.08994 * 109.54302 * 176.80595 * 25 24 5
27 27 C 1.52996 * 109.50734 * 296.91554 * 25 24 5
28 28 O 1.43009 * 109.50546 * 120.12848 * 2 1 3
29 29 H 1.08997 * 109.47127 * 180.08506 * 1 2 3
30 30 H 1.08999 * 109.47112 * 300.08979 * 1 2 3
31 31 H 1.09000 * 109.47024 * 60.09262 * 1 2 3
32 32 H 1.08997 * 109.50737 * 63.28541 * 4 2 1
33 33 H 1.08991 * 109.50879 * 303.15083 * 4 2 1
34 34 H 1.08999 * 109.47247 * 50.00394 * 6 5 4
35 35 H 1.08997 * 109.47312 * 290.00089 * 6 5 4
36 36 H 1.07994 * 119.96562 * 359.97438 * 8 7 6
37 37 H 1.07995 * 120.03215 * 180.02562 * 9 8 7
38 38 H 1.09002 * 109.47391 * 270.00190 * 12 11 10
39 39 H 1.09001 * 109.46813 * 150.00246 * 12 11 10
40 40 H 1.09004 * 109.47041 * 30.00373 * 12 11 10
41 41 H 1.09002 * 109.47278 * 29.99971 * 13 11 10
42 42 H 1.09006 * 109.46998 * 149.99492 * 13 11 10
43 43 H 0.96995 * 120.00442 * 179.97438 * 17 16 14
44 44 H 1.07999 * 120.04066 * 179.72393 * 22 10 9
45 45 H 1.08005 * 119.95949 * 180.25300 * 23 22 10
46 46 H 1.09001 * 109.50986 * 61.31298 * 24 5 4
47 47 H 1.08998 * 109.50855 * 181.45261 * 24 5 4
48 48 H 1.09001 * 109.47244 * 179.78243 * 27 25 24
49 49 H 1.08993 * 109.47179 * 299.78416 * 27 25 24
50 50 H 1.09006 * 109.47108 * 59.78214 * 27 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8940 1.0274 0.0000
4 6 2.0413 -0.7235 -1.2487
5 7 3.5093 -0.7880 -1.2047
6 6 4.0447 -1.4260 -2.4148
7 6 5.5417 -1.2564 -2.4517
8 6 6.3583 -2.2076 -1.8680
9 6 7.7306 -2.0549 -1.8996
10 6 8.2902 -0.9446 -2.5189
11 7 9.6777 -0.7869 -2.5521
12 6 10.5443 -1.7928 -1.9329
13 6 10.2662 0.3850 -3.2053
14 6 10.5194 0.0760 -4.6583
15 1 10.2668 -0.8960 -5.0556
16 6 11.0726 1.0344 -5.4807
17 7 11.3798 2.2181 -4.9970
18 14 11.3858 0.6515 -7.2820
19 1 10.9563 -0.7396 -7.5744
20 1 10.6158 1.5965 -8.1301
21 1 12.8351 0.7931 -7.5735
22 6 7.4669 0.0114 -3.0999
23 6 6.0956 -0.1501 -3.0694
24 6 3.9640 -1.4884 0.0053
25 6 3.4335 -0.7572 1.2414
26 1 3.7201 -1.3042 2.1395
27 6 4.0229 0.6537 1.2926
28 8 2.0076 -0.6766 1.1659
29 1 -0.3633 -1.0276 0.0015
30 1 -0.3633 0.5152 0.8892
31 1 -0.3633 0.5124 -0.8908
32 1 1.7274 -0.1787 -2.1391
33 1 1.6332 -1.7338 -1.2766
34 1 3.6045 -0.9600 -3.2963
35 1 3.7995 -2.4880 -2.4044
36 1 5.9225 -3.0703 -1.3863
37 1 8.3677 -2.7984 -1.4439
38 1 10.7220 -1.5273 -0.8907
39 1 11.4947 -1.8308 -2.4653
40 1 10.0610 -2.7686 -1.9820
41 1 9.5792 1.2276 -3.1274
42 1 11.2080 0.6378 -2.7180
43 1 11.7693 2.8923 -5.5754
44 1 7.8986 0.8780 -3.5784
45 1 5.4550 0.5908 -3.5245
46 1 3.5866 -2.5110 -0.0026
47 1 5.0536 -1.5019 0.0303
48 1 3.6418 1.1751 2.1707
49 1 5.1095 0.5917 1.3500
50 1 3.7372 1.1997 0.3934
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000127024849.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:26:55
Heat of formation + Delta-G solvation = -25.475813 kcal
Electronic energy + Delta-G solvation = -27189.455132 eV
Core-core repulsion = 23601.837881 eV
Total energy + Delta-G solvation = -3587.617251 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 318.205 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-41.10617 -40.25110 -37.78998 -36.22931 -34.73082 -34.27962 -32.00858 -31.88189
-30.67695 -29.63053 -27.81671 -27.71825 -26.25483 -24.62864 -23.81190 -23.15841
-22.72260 -20.98169 -20.33750 -18.64038 -18.11766 -17.43132 -17.29462 -16.91535
-16.53558 -16.21025 -15.94003 -15.56778 -15.48054 -15.33743 -14.96513 -14.65997
-14.51497 -14.30208 -14.05144 -13.83824 -13.38625 -13.19776 -13.18735 -13.08430
-13.02670 -12.92775 -12.73348 -12.64426 -12.59184 -12.54421 -12.39837 -12.19779
-12.03812 -11.77260 -11.68473 -11.40586 -11.21530 -10.65041 -10.51213 -10.38514
-9.65153 -9.23841 -8.36348 -7.79835 -6.37812 0.71127 0.83373 1.35758
1.37390 1.49608 2.33983 2.63649 2.76558 2.88663 3.05855 3.30967
3.82625 3.92669 3.99729 4.05375 4.13551 4.21995 4.25796 4.28351
4.41847 4.44536 4.47227 4.51573 4.64440 4.67360 4.71388 4.75283
4.76050 4.81522 4.83749 4.87739 4.91270 5.01419 5.01942 5.07375
5.11999 5.17813 5.20969 5.28842 5.32680 5.41564 5.59221 5.65658
5.70196 5.90246 6.06936 6.07655 6.10568 6.22046 6.31591 6.50223
6.82791 6.94174 7.34184 8.83162
Molecular weight = 318.20amu
Principal moments of inertia in cm(-1)
A = 0.020609 B = 0.002746 C = 0.002638
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1358.281604 B =10196.046173 C =10613.364787
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C 0.082 3.918
3 H 0.062 0.938
4 C 0.026 3.974
5 N -0.539 5.539
6 C 0.115 3.885
7 C -0.153 4.153
8 C -0.061 4.061
9 C -0.216 4.216
10 C 0.214 3.786
11 N -0.632 5.632
12 C 0.098 3.902
13 C 0.267 3.733
14 C -0.539 4.539
15 H 0.049 0.951
16 C 0.012 3.988
17 N -0.927 5.927
18 Si 0.962 3.038
19 H -0.270 1.270
20 H -0.277 1.277
21 H -0.275 1.275
22 C -0.216 4.216
23 C -0.054 4.054
24 C 0.026 3.974
25 C 0.090 3.910
26 H 0.115 0.885
27 C -0.168 4.168
28 O -0.393 6.393
29 H 0.061 0.939
30 H 0.065 0.935
31 H 0.088 0.912
32 H 0.095 0.905
33 H 0.041 0.959
34 H 0.085 0.915
35 H 0.047 0.953
36 H 0.137 0.863
37 H 0.132 0.868
38 H 0.052 0.948
39 H 0.056 0.944
40 H 0.078 0.922
41 H 0.010 0.990
42 H 0.009 0.991
43 H 0.267 0.733
44 H 0.094 0.906
45 H 0.121 0.879
46 H 0.041 0.959
47 H 0.085 0.915
48 H 0.060 0.940
49 H 0.060 0.940
50 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.319 -8.219 10.566 23.504
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C 0.024 3.976
3 H 0.080 0.920
4 C -0.102 4.102
5 N -0.264 5.264
6 C -0.012 4.012
7 C -0.155 4.155
8 C -0.080 4.080
9 C -0.239 4.239
10 C 0.109 3.891
11 N -0.340 5.340
12 C -0.045 4.045
13 C 0.145 3.855
14 C -0.578 4.578
15 H 0.067 0.933
16 C -0.187 4.187
17 N -0.567 5.567
18 Si 0.787 3.213
19 H -0.195 1.195
20 H -0.203 1.203
21 H -0.200 1.200
22 C -0.239 4.239
23 C -0.073 4.073
24 C -0.102 4.102
25 C 0.032 3.968
26 H 0.132 0.868
27 C -0.226 4.226
28 O -0.313 6.313
29 H 0.080 0.920
30 H 0.084 0.916
31 H 0.107 0.893
32 H 0.113 0.887
33 H 0.059 0.941
34 H 0.103 0.897
35 H 0.065 0.935
36 H 0.154 0.846
37 H 0.150 0.850
38 H 0.070 0.930
39 H 0.074 0.926
40 H 0.097 0.903
41 H 0.028 0.972
42 H 0.027 0.973
43 H 0.076 0.924
44 H 0.112 0.888
45 H 0.139 0.861
46 H 0.059 0.941
47 H 0.103 0.897
48 H 0.079 0.921
49 H 0.079 0.921
50 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -18.956 -7.625 10.677 23.053
hybrid contribution 0.811 -0.293 -1.325 1.581
sum -18.144 -7.918 9.352 21.895
Atomic orbital electron populations
1.21742 0.91415 1.03065 1.03442 1.22273 0.95710 0.95604 0.84002
0.91975 1.22844 0.87277 1.00231 0.99816 1.62190 1.08797 1.53289
1.02078 1.20811 0.90408 0.97334 0.92635 1.19404 0.95088 0.96568
1.04473 1.20861 0.92014 0.98186 0.96904 1.20757 0.96024 0.98719
1.08387 1.18201 0.83597 0.94055 0.93206 1.46967 1.02593 1.24892
1.59572 1.21597 0.94346 0.91689 0.96842 1.18767 0.92103 0.83482
0.91164 1.21790 1.41138 0.99148 0.95727 0.93301 1.25788 0.95084
0.94653 1.03222 1.70043 1.43705 1.05272 1.37663 0.85445 0.78047
0.78306 0.79509 1.19480 1.20261 1.19994 1.20770 0.94431 1.00987
1.07676 1.20753 0.92839 0.96854 0.96837 1.22795 1.01586 0.95512
0.90341 1.22322 0.80226 0.96477 0.97767 0.86766 1.22194 1.01199
0.97064 1.02132 1.87995 1.21338 1.78320 1.43641 0.91975 0.91643
0.89315 0.88712 0.94071 0.89697 0.93503 0.84573 0.85007 0.92978
0.92561 0.90318 0.97157 0.97347 0.92389 0.88812 0.86069 0.94081
0.89652 0.92105 0.92068 0.92173
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.83 9.57 71.98 0.69 -1.14 16
2 C 0.08 1.47 3.02 30.63 0.09 1.56 16
3 H 0.06 1.21 6.50 -2.39 -0.02 1.19 16
4 C 0.03 0.47 4.93 86.32 0.43 0.89 16
5 N -0.54 -11.53 4.08 -899.78 -3.67 -15.21 16
6 C 0.11 2.53 5.11 85.56 0.44 2.96 16
7 C -0.15 -4.30 4.90 -19.84 -0.10 -4.40 16
8 C -0.06 -1.67 7.92 22.25 0.18 -1.49 16
9 C -0.22 -7.00 9.21 22.40 0.21 -6.79 16
10 C 0.21 8.69 6.55 38.21 0.25 8.94 16
11 N -0.63 -27.73 2.99 -726.56 -2.17 -29.90 16
12 C 0.10 3.40 10.19 127.77 1.30 4.71 16
13 C 0.27 14.09 4.92 85.63 0.42 14.51 16
14 C -0.54 -30.41 9.39 25.60 0.24 -30.17 16
15 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16
16 C 0.01 0.66 5.46 84.65 0.46 1.12 16
17 N -0.93 -54.62 13.29 21.45 0.28 -54.34 16
18 Si 0.96 44.18 29.54 68.60 2.03 46.21 16
19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16
20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16
21 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16
22 C -0.22 -9.03 9.21 22.40 0.21 -8.82 16
23 C -0.05 -1.82 9.69 22.25 0.22 -1.60 16
24 C 0.03 0.53 4.68 86.32 0.40 0.94 16
25 C 0.09 1.79 3.92 30.63 0.12 1.91 16
26 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16
27 C -0.17 -3.51 8.88 71.98 0.64 -2.87 16
28 O -0.39 -8.42 10.28 -148.98 -1.53 -9.95 16
29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16
30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16
31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16
32 H 0.09 1.46 8.09 -2.39 -0.02 1.44 16
33 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16
34 H 0.08 1.75 7.98 -2.39 -0.02 1.73 16
35 H 0.05 0.93 8.06 -2.39 -0.02 0.92 16
36 H 0.14 2.91 8.00 -2.91 -0.02 2.89 16
37 H 0.13 3.70 6.14 -2.91 -0.02 3.68 16
38 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16
39 H 0.06 2.03 8.07 -2.39 -0.02 2.01 16
40 H 0.08 2.30 6.20 -2.38 -0.01 2.28 16
41 H 0.01 0.60 6.19 -2.39 -0.01 0.58 16
42 H 0.01 0.47 8.07 -2.38 -0.02 0.46 16
43 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16
44 H 0.09 4.55 6.14 -2.91 -0.02 4.53 16
45 H 0.12 3.75 8.06 -2.91 -0.02 3.72 16
46 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16
47 H 0.09 1.93 6.01 -2.39 -0.01 1.92 16
48 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16
49 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16
50 H 0.06 1.40 6.13 -2.38 -0.01 1.39 16
Total: -1.00 -64.19 388.08 2.02 -62.17
By element:
Atomic # 1 Polarization: 19.87 SS G_CDS: 0.90 Total: 20.77 kcal
Atomic # 6 Polarization: -25.94 SS G_CDS: 6.19 Total: -19.75 kcal
Atomic # 7 Polarization: -93.88 SS G_CDS: -5.56 Total: -99.44 kcal
Atomic # 8 Polarization: -8.42 SS G_CDS: -1.53 Total: -9.95 kcal
Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal
Total: -64.19 2.02 -62.17 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000127024849.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.693 kcal
(2) G-P(sol) polarization free energy of solvation -64.192 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.500 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.168 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.476 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds