Wall clock time and date at job start Tue Mar 31 2020 13:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47609 * 2 1 4 4 N 1.46900 * 109.47256 * 239.99711 * 2 1 3 5 5 C 1.46899 * 110.99926 * 85.00186 * 4 2 1 6 6 H 1.09000 * 109.57753 * 325.15583 * 5 4 2 7 7 C 1.53115 * 109.52634 * 85.31891 * 5 4 2 8 8 C 1.53035 * 109.28407 * 177.56222 * 7 5 4 9 9 N 1.46854 * 109.52093 * 300.81715 * 8 7 5 10 10 C 1.46900 * 111.00199 * 185.83555 * 9 8 7 11 11 C 1.46847 * 111.19404 * 61.74325 * 9 8 7 12 12 H 1.09000 * 109.46020 * 178.24288 * 11 9 8 13 13 C 1.52996 * 109.46604 * 58.26065 * 11 9 8 14 14 C 1.53043 * 109.52661 * 298.25503 * 11 9 8 15 15 C 1.50705 * 109.47146 * 120.00172 * 2 1 3 16 16 C 1.38299 * 119.93376 * 79.72486 * 15 2 1 17 17 C 1.38097 * 120.07168 * 179.73178 * 16 15 2 18 18 C 1.38884 * 119.92377 * 0.56348 * 17 16 15 19 19 O 1.35752 * 120.06389 * 179.68736 * 18 17 16 20 20 C 1.34833 * 117.00125 * 174.48893 * 19 18 17 21 21 H 1.08004 * 119.99611 * 5.05921 * 20 19 18 22 22 C 1.38646 * 120.00564 * 185.05832 * 20 19 18 23 23 N 1.31561 * 119.99760 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00287 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47290 * 89.99792 * 24 22 20 26 26 H 1.48497 * 109.46986 * 209.99981 * 24 22 20 27 27 H 1.48500 * 109.46982 * 329.99415 * 24 22 20 28 28 C 1.38872 * 119.86760 * 359.70712 * 18 17 16 29 29 C 1.38101 * 119.92610 * 0.02562 * 28 18 17 30 30 H 1.08999 * 109.47205 * 300.00113 * 1 2 3 31 31 H 1.09005 * 109.47070 * 60.00457 * 1 2 3 32 32 H 1.08999 * 109.47108 * 179.97438 * 1 2 3 33 33 H 1.00902 * 111.00340 * 321.05043 * 4 2 1 34 34 H 1.09003 * 109.49903 * 297.50180 * 7 5 4 35 35 H 1.09004 * 109.50322 * 57.57859 * 7 5 4 36 36 H 1.08995 * 109.46716 * 180.80453 * 8 7 5 37 37 H 1.08994 * 109.46310 * 60.83190 * 8 7 5 38 38 H 1.09001 * 109.47078 * 295.79387 * 10 9 8 39 39 H 1.09003 * 109.46387 * 55.79295 * 10 9 8 40 40 H 1.09001 * 109.47111 * 175.78932 * 10 9 8 41 41 H 1.09006 * 109.46697 * 60.00233 * 13 11 9 42 42 H 1.09004 * 109.47245 * 179.97438 * 13 11 9 43 43 H 1.08993 * 109.47203 * 300.00069 * 13 11 9 44 44 H 1.08995 * 109.50974 * 179.12640 * 14 11 9 45 45 H 1.09000 * 109.50341 * 299.24335 * 14 11 9 46 46 H 1.08004 * 119.96325 * 359.97438 * 16 15 2 47 47 H 1.07993 * 120.03848 * 180.27376 * 17 16 15 48 48 H 0.97000 * 119.99943 * 180.02562 * 23 22 20 49 49 H 1.07999 * 120.03681 * 180.02562 * 28 18 17 50 50 H 1.08011 * 119.96380 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2225 -2.3468 6 1 1.2599 0.9355 -2.2909 7 6 3.4151 0.9763 -2.3279 8 6 3.5006 1.8826 -3.5581 9 7 3.3956 1.0684 -4.7757 10 6 3.6120 1.8866 -5.9765 11 6 2.1043 0.3722 -4.8391 12 1 2.0440 -0.1975 -5.7665 13 6 0.9696 1.3975 -4.7959 14 6 1.9770 -0.5793 -3.6471 15 6 2.0323 -0.7105 1.2305 16 6 2.0608 -2.0927 1.2660 17 6 2.5258 -2.7466 2.3899 18 6 2.9541 -2.0147 3.4898 19 8 3.4057 -2.6547 4.5986 20 6 3.9123 -1.8872 5.5847 21 1 3.8708 -0.8108 5.5066 22 6 4.4867 -2.4798 6.6988 23 7 4.5368 -3.7910 6.7941 24 14 5.1879 -1.4165 8.0653 25 1 4.1288 -1.1369 9.0679 26 1 6.3133 -2.1306 8.7200 27 1 5.6791 -0.1368 7.4940 28 6 2.9190 -0.6269 3.4532 29 6 2.4581 0.0211 2.3241 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.4496 -1.4980 -1.4100 34 1 3.4774 1.5826 -1.4242 35 1 4.2379 0.2614 -2.3440 36 1 4.4545 2.4100 -3.5551 37 1 2.6857 2.6060 -3.5335 38 1 2.8182 2.6291 -6.0581 39 1 4.5755 2.3911 -5.9034 40 1 3.6030 1.2465 -6.8587 41 1 1.0594 2.0747 -5.6453 42 1 0.0109 0.8808 -4.8434 43 1 1.0300 1.9674 -3.8688 44 1 1.0120 -1.0844 -3.6860 45 1 2.7771 -1.3186 -3.6846 46 1 1.7227 -2.6613 0.4122 47 1 2.5519 -3.8259 2.4154 48 1 4.9383 -4.2056 7.5737 49 1 3.2518 -0.0550 4.3068 50 1 2.4302 1.1005 2.2952 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157652752.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:00 Heat of formation + Delta-G solvation = -0.435612 kcal Electronic energy + Delta-G solvation = -26796.779141 eV Core-core repulsion = 23210.247715 eV Total energy + Delta-G solvation = -3586.531426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.11177 -39.03927 -37.42973 -35.69611 -33.01977 -32.17536 -32.01479 -30.17086 -29.49354 -27.90515 -27.35241 -25.76707 -25.34424 -23.31444 -22.79006 -22.07664 -21.37897 -19.94048 -18.80304 -17.87099 -16.92758 -16.60724 -15.70083 -15.52875 -15.23242 -14.70118 -14.56872 -14.47087 -14.17002 -13.81310 -13.61794 -13.53261 -13.24714 -13.13142 -12.98985 -12.77712 -12.65152 -12.45661 -12.41055 -12.16091 -12.03573 -11.65238 -11.62160 -11.40313 -11.28788 -11.16752 -11.10353 -10.77959 -10.63848 -10.59279 -10.41391 -10.33303 -10.19410 -9.26097 -8.77328 -8.53389 -8.29004 -8.07502 -7.07322 -6.39542 -3.98208 2.31131 2.41222 3.15550 3.16729 3.21445 3.65357 4.01109 4.10572 4.47113 4.60829 4.64877 4.80739 4.89611 4.99960 5.02856 5.11060 5.14329 5.15765 5.19282 5.27812 5.34898 5.36148 5.39374 5.44960 5.48560 5.53425 5.56183 5.64642 5.71596 5.78674 5.81563 5.84589 5.86921 5.96384 6.02557 6.07283 6.18150 6.29558 6.35420 6.50905 6.79236 6.82777 6.85069 6.95020 7.11866 7.14850 7.37784 7.48565 7.50508 7.53374 7.91537 8.05897 9.06394 9.78188 10.78801 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.025684 B = 0.002324 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.893367 B =12047.431502 C =12392.939884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.142 3.858 3 H 0.074 0.926 4 N -0.674 5.674 5 C 0.088 3.912 6 H 0.041 0.959 7 C -0.105 4.105 8 C 0.052 3.948 9 N -0.535 5.535 10 C 0.022 3.978 11 C 0.084 3.916 12 H 0.082 0.918 13 C -0.191 4.191 14 C -0.113 4.113 15 C -0.164 4.164 16 C -0.053 4.053 17 C -0.194 4.194 18 C 0.153 3.847 19 O -0.181 6.181 20 C -0.390 4.390 21 H 0.091 0.909 22 C 0.038 3.962 23 N -0.865 5.865 24 Si 0.940 3.060 25 H -0.274 1.274 26 H -0.278 1.278 27 H -0.268 1.268 28 C -0.233 4.233 29 C -0.069 4.069 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.339 0.661 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.034 0.966 38 H 0.026 0.974 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.081 0.919 46 H 0.108 0.892 47 H 0.114 0.886 48 H 0.269 0.731 49 H 0.125 0.875 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.459 11.153 -22.437 25.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.032 3.968 3 H 0.092 0.908 4 N -0.304 5.304 5 C -0.022 4.022 6 H 0.059 0.941 7 C -0.143 4.143 8 C -0.076 4.076 9 N -0.258 5.258 10 C -0.126 4.126 11 C -0.025 4.025 12 H 0.100 0.900 13 C -0.250 4.250 14 C -0.151 4.151 15 C -0.166 4.166 16 C -0.071 4.071 17 C -0.213 4.213 18 C 0.099 3.901 19 O -0.084 6.084 20 C -0.466 4.466 21 H 0.108 0.892 22 C -0.166 4.166 23 N -0.500 5.500 24 Si 0.765 3.235 25 H -0.200 1.200 26 H -0.203 1.203 27 H -0.192 1.192 28 C -0.252 4.252 29 C -0.088 4.088 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.158 0.842 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.052 0.948 38 H 0.045 0.955 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.100 0.900 46 H 0.126 0.874 47 H 0.132 0.868 48 H 0.079 0.921 49 H 0.142 0.858 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.316 10.458 -22.018 24.949 hybrid contribution -1.240 1.352 0.488 1.898 sum -6.555 11.810 -21.531 25.417 Atomic orbital electron populations 1.22500 0.97468 1.02095 1.01370 1.20208 0.91571 0.96690 0.88303 0.90811 1.60613 1.57760 1.09151 1.02915 1.21553 0.96790 0.94090 0.89741 0.94144 1.21587 0.98313 0.98497 0.95909 1.22156 1.00759 0.94793 0.89901 1.62148 1.31406 1.30053 1.02229 1.22380 1.00723 0.96557 0.92947 1.21631 0.87079 0.94726 0.99029 0.90015 1.22532 0.99754 1.00522 1.02143 1.21776 1.02236 0.98074 0.93046 1.19059 1.08990 0.93525 0.94989 1.20299 0.97598 0.93398 0.95831 1.20207 1.08824 0.99299 0.93000 1.19385 0.92159 0.90916 0.87604 1.83980 1.67638 1.35011 1.21817 1.21302 1.37932 0.90661 0.96744 0.89180 1.25271 0.96843 0.96298 0.98181 1.70043 1.41988 1.08692 1.29268 0.85730 0.78654 0.79115 0.80027 1.19962 1.20294 1.19245 1.21096 1.09700 0.94413 1.00022 1.20529 0.97398 0.98000 0.92835 0.91945 0.93597 0.92369 0.84234 0.91630 0.90177 0.90791 0.94774 0.95536 0.91465 0.91504 0.92664 0.92048 0.91851 0.91774 0.90014 0.87401 0.86765 0.92120 0.85754 0.87942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 9.12 37.16 0.34 -1.66 16 2 C 0.14 1.84 2.60 -68.86 -0.18 1.66 16 3 H 0.07 0.96 7.02 -51.93 -0.36 0.60 16 4 N -0.67 -7.97 5.52 -100.82 -0.56 -8.53 16 5 C 0.09 0.88 2.06 -67.59 -0.14 0.74 16 6 H 0.04 0.41 5.54 -51.93 -0.29 0.12 16 7 C -0.10 -1.11 5.57 -26.65 -0.15 -1.26 16 8 C 0.05 0.47 5.17 -3.83 -0.02 0.45 16 9 N -0.53 -4.74 4.86 -234.92 -1.14 -5.88 16 10 C 0.02 0.16 9.32 60.06 0.56 0.72 16 11 C 0.08 0.68 2.93 -67.72 -0.20 0.48 16 12 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 13 C -0.19 -1.39 8.18 37.16 0.30 -1.08 16 14 C -0.11 -1.00 4.88 -26.64 -0.13 -1.13 16 15 C -0.16 -2.77 4.96 -104.58 -0.52 -3.29 16 16 C -0.05 -0.95 9.31 -39.61 -0.37 -1.31 16 17 C -0.19 -4.18 9.99 -39.39 -0.39 -4.57 16 18 C 0.15 3.76 6.65 -39.11 -0.26 3.50 16 19 O -0.18 -5.25 9.76 0.03 0.00 -5.25 16 20 C -0.39 -11.08 9.49 30.88 0.29 -10.79 16 21 H 0.09 2.37 5.20 -52.48 -0.27 2.10 16 22 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 23 N -0.86 -25.73 13.67 55.48 0.76 -24.97 16 24 Si 0.94 20.83 29.55 -169.99 -5.02 15.81 16 25 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 26 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 27 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 28 C -0.23 -5.14 9.17 -39.40 -0.36 -5.50 16 29 C -0.07 -1.27 9.66 -39.61 -0.38 -1.66 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.04 0.45 7.43 -51.93 -0.39 0.07 16 32 H 0.06 0.67 8.13 -51.93 -0.42 0.24 16 33 H 0.34 3.72 7.45 -39.29 -0.29 3.43 16 34 H 0.07 0.73 7.49 -51.93 -0.39 0.34 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 37 H 0.03 0.30 6.19 -51.93 -0.32 -0.02 16 38 H 0.03 0.18 6.46 -51.93 -0.34 -0.16 16 39 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.05 0.38 6.54 -51.93 -0.34 0.04 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.51 4.80 -51.93 -0.25 0.26 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.11 1.65 7.25 -52.48 -0.38 1.27 16 47 H 0.11 2.40 8.06 -52.49 -0.42 1.97 16 48 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 49 H 0.12 2.76 5.64 -52.49 -0.30 2.46 16 50 H 0.10 1.62 8.03 -52.48 -0.42 1.20 16 LS Contribution 381.92 15.07 5.76 5.76 Total: -1.00 -30.50 381.92 -10.02 -40.52 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -8.11 Total: 6.30 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: -1.70 Total: -23.74 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: -0.94 Total: -39.38 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: 0.00 Total: -5.25 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.50 -10.02 -40.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157652752.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.083 kcal (2) G-P(sol) polarization free energy of solvation -30.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds