Wall clock time and date at job start Tue Mar 31 2020 13:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47609 * 2 1 4 4 N 1.46900 * 109.47256 * 239.99711 * 2 1 3 5 5 C 1.46899 * 110.99926 * 85.00186 * 4 2 1 6 6 H 1.09000 * 109.57753 * 325.15583 * 5 4 2 7 7 C 1.53115 * 109.52634 * 85.31891 * 5 4 2 8 8 C 1.53035 * 109.28407 * 177.56222 * 7 5 4 9 9 N 1.46854 * 109.52093 * 300.81715 * 8 7 5 10 10 C 1.46900 * 111.00199 * 185.83555 * 9 8 7 11 11 C 1.46847 * 111.19404 * 61.74325 * 9 8 7 12 12 H 1.09000 * 109.46020 * 178.24288 * 11 9 8 13 13 C 1.52996 * 109.46604 * 58.26065 * 11 9 8 14 14 C 1.53043 * 109.52661 * 298.25503 * 11 9 8 15 15 C 1.50705 * 109.47146 * 120.00172 * 2 1 3 16 16 C 1.38299 * 119.93376 * 79.72486 * 15 2 1 17 17 C 1.38097 * 120.07168 * 179.73178 * 16 15 2 18 18 C 1.38884 * 119.92377 * 0.56348 * 17 16 15 19 19 O 1.35752 * 120.06389 * 179.68736 * 18 17 16 20 20 C 1.34833 * 117.00125 * 174.48893 * 19 18 17 21 21 H 1.08004 * 119.99611 * 5.05921 * 20 19 18 22 22 C 1.38646 * 120.00564 * 185.05832 * 20 19 18 23 23 N 1.31561 * 119.99760 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00287 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47290 * 89.99792 * 24 22 20 26 26 H 1.48497 * 109.46986 * 209.99981 * 24 22 20 27 27 H 1.48500 * 109.46982 * 329.99415 * 24 22 20 28 28 C 1.38872 * 119.86760 * 359.70712 * 18 17 16 29 29 C 1.38101 * 119.92610 * 0.02562 * 28 18 17 30 30 H 1.08999 * 109.47205 * 300.00113 * 1 2 3 31 31 H 1.09005 * 109.47070 * 60.00457 * 1 2 3 32 32 H 1.08999 * 109.47108 * 179.97438 * 1 2 3 33 33 H 1.00902 * 111.00340 * 321.05043 * 4 2 1 34 34 H 1.09003 * 109.49903 * 297.50180 * 7 5 4 35 35 H 1.09004 * 109.50322 * 57.57859 * 7 5 4 36 36 H 1.08995 * 109.46716 * 180.80453 * 8 7 5 37 37 H 1.08994 * 109.46310 * 60.83190 * 8 7 5 38 38 H 1.09001 * 109.47078 * 295.79387 * 10 9 8 39 39 H 1.09003 * 109.46387 * 55.79295 * 10 9 8 40 40 H 1.09001 * 109.47111 * 175.78932 * 10 9 8 41 41 H 1.09006 * 109.46697 * 60.00233 * 13 11 9 42 42 H 1.09004 * 109.47245 * 179.97438 * 13 11 9 43 43 H 1.08993 * 109.47203 * 300.00069 * 13 11 9 44 44 H 1.08995 * 109.50974 * 179.12640 * 14 11 9 45 45 H 1.09000 * 109.50341 * 299.24335 * 14 11 9 46 46 H 1.08004 * 119.96325 * 359.97438 * 16 15 2 47 47 H 1.07993 * 120.03848 * 180.27376 * 17 16 15 48 48 H 0.97000 * 119.99943 * 180.02562 * 23 22 20 49 49 H 1.07999 * 120.03681 * 180.02562 * 28 18 17 50 50 H 1.08011 * 119.96380 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2225 -2.3468 6 1 1.2599 0.9355 -2.2909 7 6 3.4151 0.9763 -2.3279 8 6 3.5006 1.8826 -3.5581 9 7 3.3956 1.0684 -4.7757 10 6 3.6120 1.8866 -5.9765 11 6 2.1043 0.3722 -4.8391 12 1 2.0440 -0.1975 -5.7665 13 6 0.9696 1.3975 -4.7959 14 6 1.9770 -0.5793 -3.6471 15 6 2.0323 -0.7105 1.2305 16 6 2.0608 -2.0927 1.2660 17 6 2.5258 -2.7466 2.3899 18 6 2.9541 -2.0147 3.4898 19 8 3.4057 -2.6547 4.5986 20 6 3.9123 -1.8872 5.5847 21 1 3.8708 -0.8108 5.5066 22 6 4.4867 -2.4798 6.6988 23 7 4.5368 -3.7910 6.7941 24 14 5.1879 -1.4165 8.0653 25 1 4.1288 -1.1369 9.0679 26 1 6.3133 -2.1306 8.7200 27 1 5.6791 -0.1368 7.4940 28 6 2.9190 -0.6269 3.4532 29 6 2.4581 0.0211 2.3241 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.4496 -1.4980 -1.4100 34 1 3.4774 1.5826 -1.4242 35 1 4.2379 0.2614 -2.3440 36 1 4.4545 2.4100 -3.5551 37 1 2.6857 2.6060 -3.5335 38 1 2.8182 2.6291 -6.0581 39 1 4.5755 2.3911 -5.9034 40 1 3.6030 1.2465 -6.8587 41 1 1.0594 2.0747 -5.6453 42 1 0.0109 0.8808 -4.8434 43 1 1.0300 1.9674 -3.8688 44 1 1.0120 -1.0844 -3.6860 45 1 2.7771 -1.3186 -3.6846 46 1 1.7227 -2.6613 0.4122 47 1 2.5519 -3.8259 2.4154 48 1 4.9383 -4.2056 7.5737 49 1 3.2518 -0.0550 4.3068 50 1 2.4302 1.1005 2.2952 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157652752.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:59 Heat of formation + Delta-G solvation = -20.120497 kcal Electronic energy + Delta-G solvation = -26797.632742 eV Core-core repulsion = 23210.247715 eV Total energy + Delta-G solvation = -3587.385027 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.99792 -40.57680 -38.87082 -36.98511 -34.38287 -33.72996 -32.76752 -31.78564 -30.55860 -29.23776 -28.03156 -27.33697 -26.43098 -24.26195 -23.82540 -23.57328 -22.45667 -21.34295 -19.72093 -19.54361 -18.77398 -17.47279 -16.64002 -16.44296 -16.25379 -16.17808 -16.06191 -15.52204 -15.37247 -15.21323 -15.08348 -14.65617 -14.39375 -14.15205 -14.01586 -13.96551 -13.80405 -13.54746 -13.48841 -13.20403 -12.96659 -12.91643 -12.74603 -12.56426 -12.35784 -12.25222 -12.15626 -12.08731 -11.99444 -11.88043 -11.69799 -11.34608 -11.14565 -11.00601 -10.76110 -9.71453 -9.23337 -9.15326 -8.81539 -8.45057 -6.12880 0.66098 0.77360 1.34926 1.44644 1.52731 2.19062 2.84166 3.03415 3.13928 3.30969 3.57057 3.79013 3.89956 4.02669 4.13034 4.16738 4.22187 4.24955 4.30818 4.40821 4.41885 4.46858 4.51855 4.53443 4.64394 4.66152 4.68557 4.75112 4.80402 4.84673 4.92832 4.95802 5.01413 5.07353 5.10211 5.15105 5.17293 5.19237 5.22747 5.29802 5.32582 5.35070 5.52364 5.66153 5.76185 5.85037 6.06032 6.19687 6.23422 6.26093 6.33591 6.60311 6.99811 7.82661 8.78523 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.025684 B = 0.002324 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.893367 B =12047.431502 C =12392.939884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.147 3.853 3 H 0.082 0.918 4 N -0.685 5.685 5 C 0.094 3.906 6 H 0.051 0.949 7 C -0.103 4.103 8 C 0.057 3.943 9 N -0.551 5.551 10 C 0.023 3.977 11 C 0.084 3.916 12 H 0.088 0.912 13 C -0.185 4.185 14 C -0.109 4.109 15 C -0.138 4.138 16 C -0.046 4.046 17 C -0.206 4.206 18 C 0.109 3.891 19 O -0.236 6.236 20 C -0.412 4.412 21 H 0.100 0.900 22 C -0.026 4.026 23 N -0.923 5.923 24 Si 1.019 2.981 25 H -0.262 1.262 26 H -0.271 1.271 27 H -0.254 1.254 28 C -0.242 4.242 29 C -0.070 4.070 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.346 0.654 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.041 0.959 38 H 0.033 0.967 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.056 0.944 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.142 0.858 47 H 0.109 0.891 48 H 0.272 0.728 49 H 0.116 0.884 50 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.798 13.711 -24.963 29.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.037 3.963 3 H 0.100 0.900 4 N -0.317 5.317 5 C -0.015 4.015 6 H 0.069 0.931 7 C -0.142 4.142 8 C -0.071 4.071 9 N -0.275 5.275 10 C -0.125 4.125 11 C -0.025 4.025 12 H 0.106 0.894 13 C -0.243 4.243 14 C -0.147 4.147 15 C -0.139 4.139 16 C -0.064 4.064 17 C -0.226 4.226 18 C 0.059 3.941 19 O -0.143 6.143 20 C -0.488 4.488 21 H 0.117 0.883 22 C -0.222 4.222 23 N -0.561 5.561 24 Si 0.838 3.162 25 H -0.187 1.187 26 H -0.196 1.196 27 H -0.178 1.178 28 C -0.261 4.261 29 C -0.088 4.088 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.166 0.834 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.097 0.903 45 H 0.084 0.916 46 H 0.159 0.841 47 H 0.127 0.873 48 H 0.081 0.919 49 H 0.134 0.866 50 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.684 13.042 -24.609 28.642 hybrid contribution -0.940 0.631 0.903 1.448 sum -7.624 13.673 -23.706 28.408 Atomic orbital electron populations 1.22424 0.95527 1.02538 1.02377 1.20151 0.92852 0.96402 0.86883 0.90018 1.60502 1.58111 1.09843 1.03233 1.21525 0.96557 0.93939 0.89465 0.93144 1.21550 0.97926 0.98200 0.96528 1.22068 1.01094 0.94503 0.89438 1.62138 1.32119 1.30578 1.02654 1.22403 1.01055 0.96652 0.92404 1.21651 0.87127 0.94825 0.98855 0.89408 1.22465 0.99665 1.00228 1.01977 1.21732 1.02420 0.97796 0.92730 1.19642 1.05105 0.93280 0.95908 1.20656 0.96153 0.94247 0.95322 1.20464 1.09196 0.99378 0.93523 1.19928 0.93962 0.92475 0.87761 1.83940 1.70331 1.36483 1.23519 1.21798 1.38334 0.91330 0.97322 0.88279 1.26594 0.96995 0.97847 1.00812 1.70192 1.44320 1.10965 1.30637 0.84588 0.78019 0.77386 0.76210 1.18732 1.19587 1.17753 1.21194 1.10216 0.93483 1.01207 1.20903 0.96253 0.99841 0.91822 0.92320 0.91301 0.92256 0.83423 0.92301 0.92534 0.90784 0.94050 0.94879 0.91316 0.90874 0.92220 0.91220 0.92482 0.90304 0.91630 0.84079 0.87315 0.91920 0.86644 0.84578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.15 9.12 71.98 0.66 -2.49 16 2 C 0.15 3.28 2.60 44.17 0.11 3.39 16 3 H 0.08 1.78 7.02 -2.39 -0.02 1.76 16 4 N -0.69 -13.97 5.52 -472.90 -2.61 -16.58 16 5 C 0.09 1.60 2.06 45.00 0.09 1.69 16 6 H 0.05 0.80 5.54 -2.39 -0.01 0.78 16 7 C -0.10 -2.00 5.57 30.64 0.17 -1.82 16 8 C 0.06 0.91 5.17 86.32 0.45 1.36 16 9 N -0.55 -8.54 4.86 -897.16 -4.36 -12.90 16 10 C 0.02 0.27 9.32 127.69 1.19 1.46 16 11 C 0.08 1.12 2.93 44.94 0.13 1.25 16 12 H 0.09 1.08 8.12 -2.39 -0.02 1.06 16 13 C -0.18 -2.05 8.18 71.98 0.59 -1.46 16 14 C -0.11 -1.61 4.88 30.65 0.15 -1.46 16 15 C -0.14 -4.32 4.96 -19.83 -0.10 -4.41 16 16 C -0.05 -1.56 9.31 22.25 0.21 -1.35 16 17 C -0.21 -9.11 9.99 22.39 0.22 -8.88 16 18 C 0.11 5.59 6.65 22.58 0.15 5.74 16 19 O -0.24 -14.63 9.76 -22.79 -0.22 -14.85 16 20 C -0.41 -24.63 9.49 67.92 0.64 -23.99 16 21 H 0.10 5.46 5.20 -2.91 -0.02 5.44 16 22 C -0.03 -1.48 5.49 84.83 0.47 -1.02 16 23 N -0.92 -57.90 13.67 21.61 0.30 -57.60 16 24 Si 1.02 43.85 29.55 68.60 2.03 45.88 16 25 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 27 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 28 C -0.24 -10.85 9.17 22.39 0.21 -10.65 16 29 C -0.07 -2.46 9.66 22.25 0.21 -2.24 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.01 7.43 -2.38 -0.02 1.00 16 32 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 33 H 0.35 6.29 7.45 -89.69 -0.67 5.62 16 34 H 0.06 1.19 7.49 -2.39 -0.02 1.17 16 35 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 36 H 0.07 1.16 8.08 -2.39 -0.02 1.14 16 37 H 0.04 0.61 6.19 -2.39 -0.01 0.59 16 38 H 0.03 0.35 6.46 -2.39 -0.02 0.33 16 39 H 0.07 0.78 8.09 -2.39 -0.02 0.76 16 40 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.06 0.62 6.54 -2.38 -0.02 0.60 16 42 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 43 H 0.06 0.71 4.80 -2.39 -0.01 0.70 16 44 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.14 3.89 7.25 -2.91 -0.02 3.87 16 47 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 48 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 49 H 0.12 5.29 5.64 -2.91 -0.02 5.27 16 50 H 0.14 3.87 8.03 -2.90 -0.02 3.85 16 Total: -1.00 -71.21 381.92 0.95 -70.26 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: 0.27 Total: 30.68 kcal Atomic # 6 Polarization: -50.44 SS G_CDS: 5.55 Total: -44.88 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -6.67 Total: -87.08 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.22 Total: -14.85 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -71.21 0.95 -70.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157652752.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.139 kcal (2) G-P(sol) polarization free energy of solvation -71.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds