Wall clock time and date at job start Tue Mar 31 2020 12:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46671 * 2 1 4 4 H 1.08998 * 109.46905 * 305.15712 * 3 2 1 5 5 C 1.52998 * 109.46821 * 185.15654 * 3 2 1 6 6 N 1.46502 * 109.47166 * 65.15892 * 3 2 1 7 7 C 1.46492 * 119.99971 * 242.33034 * 6 3 2 8 8 C 1.50699 * 109.46930 * 269.99747 * 7 6 3 9 9 C 1.38232 * 120.00191 * 269.72487 * 8 7 6 10 10 C 1.38237 * 120.00420 * 179.76621 * 9 8 7 11 11 C 1.38240 * 119.99559 * 0.51156 * 10 9 8 12 12 C 1.38232 * 120.00197 * 359.74087 * 11 10 9 13 13 C 1.38240 * 119.99927 * 90.00266 * 8 7 6 14 14 C 1.34772 * 120.00036 * 62.32444 * 6 3 2 15 15 O 1.21593 * 120.00018 * 355.09356 * 14 6 3 16 16 N 1.34771 * 120.00379 * 175.08898 * 14 6 3 17 17 C 1.46494 * 120.00615 * 184.86731 * 16 14 6 18 18 C 1.53004 * 109.47319 * 180.02562 * 17 16 14 19 19 C 1.53002 * 109.47194 * 180.02562 * 18 17 16 20 20 C 1.50692 * 109.47164 * 179.97438 * 19 18 17 21 21 H 1.07997 * 120.00384 * 0.02562 * 20 19 18 22 22 C 1.37887 * 119.99924 * 179.97438 * 20 19 18 23 23 N 1.31507 * 119.99767 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 119.99831 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47373 * 89.99992 * 24 22 20 26 26 H 1.48507 * 109.47341 * 210.00137 * 24 22 20 27 27 H 1.48503 * 109.47575 * 329.99906 * 24 22 20 28 28 H 1.09004 * 109.46897 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47577 * 299.99568 * 1 2 3 30 30 H 1.09003 * 109.47807 * 59.99832 * 1 2 3 31 31 H 1.09003 * 109.47140 * 240.00780 * 2 1 3 32 32 H 1.08992 * 109.47467 * 119.99849 * 2 1 3 33 33 H 1.08998 * 109.47491 * 295.94379 * 5 3 2 34 34 H 1.09004 * 109.47189 * 55.94606 * 5 3 2 35 35 H 1.09006 * 109.46900 * 175.94471 * 5 3 2 36 36 H 1.08999 * 109.47635 * 150.00011 * 7 6 3 37 37 H 1.09003 * 109.47088 * 29.99325 * 7 6 3 38 38 H 1.07998 * 119.99721 * 359.97438 * 9 8 7 39 39 H 1.07991 * 120.00356 * 180.23234 * 10 9 8 40 40 H 1.07994 * 119.99949 * 179.72900 * 11 10 9 41 41 H 1.08000 * 120.00298 * 179.97438 * 12 11 10 42 42 H 1.07996 * 120.00091 * 359.97438 * 13 8 7 43 43 H 0.97006 * 119.99777 * 4.86704 * 16 14 6 44 44 H 1.09004 * 109.47119 * 300.00536 * 17 16 14 45 45 H 1.08998 * 109.47103 * 59.99721 * 17 16 14 46 46 H 1.08997 * 109.47230 * 299.99610 * 18 17 16 47 47 H 1.08998 * 109.46993 * 60.00206 * 18 17 16 48 48 H 1.09004 * 109.47126 * 300.00384 * 19 18 17 49 49 H 1.09003 * 109.46788 * 59.99487 * 19 18 17 50 50 H 0.97003 * 119.99992 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6030 1.9823 -0.8402 5 6 3.5644 1.4446 -0.1296 6 7 1.6555 2.0964 1.2534 7 6 0.7649 3.2593 1.2299 8 6 1.5856 4.5183 1.1184 9 6 2.0147 5.1671 2.2611 10 6 2.7716 6.3193 2.1588 11 6 3.0904 6.8286 0.9138 12 6 2.6570 6.1827 -0.2288 13 6 1.9044 5.0275 -0.1266 14 6 2.1212 1.6280 2.4282 15 8 2.7870 0.6109 2.4562 16 7 1.8490 2.2868 3.5719 17 6 2.4425 1.8391 4.8343 18 6 1.9747 2.7517 5.9698 19 6 2.5950 2.2845 7.2881 20 6 2.1348 3.1838 8.4063 21 1 1.4664 4.0060 8.1978 22 6 2.5663 2.9561 9.6960 23 7 3.3798 1.9546 9.9500 24 14 1.9953 4.0704 11.0822 25 1 0.7440 3.5280 11.6697 26 1 3.0461 4.1359 12.1295 27 1 1.7419 5.4332 10.5495 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8899 30 1 -0.3635 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 4.0042 0.9680 0.7464 34 1 3.8535 0.8953 -1.0257 35 1 3.9215 2.4719 -0.2021 36 1 0.1796 3.2874 2.1489 37 1 0.0941 3.1859 0.3738 38 1 1.7614 4.7720 3.2337 39 1 3.1100 6.8241 3.0515 40 1 3.6780 7.7311 0.8340 41 1 2.9057 6.5808 -1.2015 42 1 1.5658 4.5229 -1.0193 43 1 1.2601 3.0575 3.5593 44 1 2.1303 0.8151 5.0395 45 1 3.5291 1.8795 4.7594 46 1 2.2866 3.7758 5.7648 47 1 0.8881 2.7109 6.0445 48 1 2.2836 1.2603 7.4933 49 1 3.6817 2.3256 7.2129 50 1 3.6837 1.7946 10.8572 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172133902.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:05 Heat of formation + Delta-G solvation = -21.273391 kcal Electronic energy + Delta-G solvation = -27346.079163 eV Core-core repulsion = 23758.644143 eV Total energy + Delta-G solvation = -3587.435020 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.65311 -39.09265 -36.78502 -35.28194 -34.15536 -32.97230 -31.35643 -31.08762 -30.84743 -29.73912 -26.77697 -26.00179 -23.97872 -23.15424 -22.71361 -21.90648 -21.34225 -20.57262 -19.26975 -17.69853 -16.89424 -16.65855 -16.10088 -15.79914 -15.20844 -15.11219 -14.89445 -14.46694 -14.36117 -14.00230 -13.77078 -13.67402 -13.54614 -13.24186 -13.17694 -12.78199 -12.56316 -12.27264 -12.14843 -11.87328 -11.77465 -11.70414 -11.49209 -11.27742 -11.07130 -11.01449 -10.90170 -10.84778 -10.67212 -10.57815 -9.84695 -9.72322 -9.37789 -9.11442 -9.08044 -9.02669 -8.80917 -8.43329 -8.36385 -6.01029 -4.04030 1.10609 1.24419 2.77235 3.31004 3.37463 3.39411 3.40017 3.62845 4.07151 4.44763 4.53675 4.55209 4.72116 4.83434 4.88409 4.96474 5.01789 5.06843 5.25293 5.30056 5.34787 5.36378 5.44708 5.51892 5.57990 5.66214 5.71611 5.79897 5.83163 5.85501 5.86650 5.96300 6.07601 6.20336 6.25390 6.28049 6.34096 6.35112 6.38262 6.52881 6.63915 6.72520 6.81922 6.85807 7.04921 7.07884 7.64825 7.77849 7.97936 8.13044 8.38923 8.81712 9.02648 9.60015 11.10259 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.012128 B = 0.003258 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.125074 B = 8591.902309 C =10233.139548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.146 4.146 3 C 0.171 3.829 4 H 0.079 0.921 5 C -0.171 4.171 6 N -0.622 5.622 7 C 0.150 3.850 8 C -0.109 4.109 9 C -0.102 4.102 10 C -0.115 4.115 11 C -0.118 4.118 12 C -0.124 4.124 13 C -0.105 4.105 14 C 0.707 3.293 15 O -0.583 6.583 16 N -0.744 5.744 17 C 0.134 3.866 18 C -0.120 4.120 19 C 0.025 3.975 20 C -0.522 4.522 21 H 0.055 0.945 22 C 0.057 3.943 23 N -0.893 5.893 24 Si 0.892 3.108 25 H -0.281 1.281 26 H -0.286 1.286 27 H -0.274 1.274 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.390 0.610 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.052 0.948 47 H 0.053 0.947 48 H 0.019 0.981 49 H 0.019 0.981 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.152 5.466 -25.164 26.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.184 4.184 3 C 0.067 3.933 4 H 0.097 0.903 5 C -0.229 4.229 6 N -0.359 5.359 7 C 0.026 3.974 8 C -0.110 4.110 9 C -0.121 4.121 10 C -0.133 4.133 11 C -0.136 4.136 12 C -0.142 4.142 13 C -0.123 4.123 14 C 0.409 3.591 15 O -0.461 6.461 16 N -0.400 5.400 17 C 0.011 3.989 18 C -0.158 4.158 19 C -0.013 4.013 20 C -0.560 4.560 21 H 0.073 0.927 22 C -0.144 4.144 23 N -0.532 5.532 24 Si 0.720 3.280 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.199 1.199 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.226 0.774 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.037 0.963 49 H 0.037 0.963 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.551 4.597 -24.975 25.799 hybrid contribution -0.510 1.128 0.851 1.502 sum -5.061 5.725 -24.125 25.306 Atomic orbital electron populations 1.21705 0.96073 1.01351 1.01186 1.22042 0.95826 0.96648 1.03867 1.20846 0.95237 0.93041 0.84135 0.90275 1.22228 0.95424 1.01869 1.03339 1.47274 1.51911 1.31217 1.05471 1.20427 0.90848 0.82470 1.03627 1.20296 1.00352 0.96775 0.93625 1.21160 0.97516 0.95357 0.98045 1.21216 0.97966 0.96294 0.97844 1.21186 0.99817 0.99955 0.92676 1.21115 0.98618 0.95979 0.98453 1.20954 0.98554 0.96150 0.96660 1.15914 0.79984 0.83061 0.80130 1.90842 1.44533 1.25098 1.85666 1.45701 1.52856 1.34210 1.07281 1.21493 0.97650 0.98996 0.80776 1.21888 1.00372 0.97875 0.95686 1.19016 0.96166 0.96841 0.89255 1.21198 1.28712 1.13671 0.92432 0.92691 1.25025 0.95116 0.95414 0.98882 1.69965 1.33410 1.29404 1.20450 0.86596 0.78373 0.81048 0.81977 1.20670 1.21219 1.19904 0.93013 0.92842 0.93411 0.91658 0.89036 0.89936 0.92234 0.93017 0.89992 0.89316 0.85981 0.85731 0.86192 0.86241 0.86355 0.77432 0.91919 0.92079 0.92934 0.92862 0.96259 0.96272 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.80 37.16 0.36 -1.00 16 2 C -0.15 -1.56 5.31 -26.73 -0.14 -1.70 16 3 C 0.17 1.77 2.66 -67.93 -0.18 1.58 16 4 H 0.08 0.64 7.81 -51.93 -0.41 0.23 16 5 C -0.17 -1.94 9.14 37.16 0.34 -1.60 16 6 N -0.62 -7.14 1.87 -173.17 -0.32 -7.46 16 7 C 0.15 1.35 5.32 -5.20 -0.03 1.32 16 8 C -0.11 -1.06 5.46 -104.62 -0.57 -1.63 16 9 C -0.10 -1.11 9.42 -39.58 -0.37 -1.49 16 10 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 11 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 12 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 13 C -0.10 -0.92 9.70 -39.58 -0.38 -1.30 16 14 C 0.71 10.85 7.65 -86.93 -0.67 10.18 16 15 O -0.58 -10.93 12.53 5.28 0.07 -10.86 16 16 N -0.74 -11.10 5.22 -65.23 -0.34 -11.44 16 17 C 0.13 2.41 5.68 -4.04 -0.02 2.39 16 18 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 19 C 0.02 0.63 4.97 -27.89 -0.14 0.49 16 20 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 21 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 22 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 23 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 24 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 27 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.55 7.76 -51.93 -0.40 0.15 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 1.30 6.05 -51.93 -0.31 0.99 16 33 H 0.08 1.22 6.06 -51.93 -0.31 0.90 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.71 6.44 -51.93 -0.33 0.37 16 37 H 0.09 0.60 7.88 -51.93 -0.41 0.19 16 38 H 0.12 1.35 6.03 -52.49 -0.32 1.04 16 39 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 40 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 43 H 0.39 4.93 4.11 -40.82 -0.17 4.76 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 398.84 15.07 6.01 6.01 Total: -1.00 -32.21 398.84 -10.97 -43.17 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -8.55 Total: 3.36 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -3.55 Total: -13.13 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.07 Total: -44.99 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.07 Total: -10.86 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.21 -10.97 -43.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172133902.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.899 kcal (2) G-P(sol) polarization free energy of solvation -32.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds