Wall clock time and date at job start Tue Mar 31 2020 12:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46671 * 2 1 4 4 H 1.08998 * 109.46905 * 305.15712 * 3 2 1 5 5 C 1.52998 * 109.46821 * 185.15654 * 3 2 1 6 6 N 1.46502 * 109.47166 * 65.15892 * 3 2 1 7 7 C 1.46492 * 119.99971 * 242.33034 * 6 3 2 8 8 C 1.50699 * 109.46930 * 269.99747 * 7 6 3 9 9 C 1.38232 * 120.00191 * 269.72487 * 8 7 6 10 10 C 1.38237 * 120.00420 * 179.76621 * 9 8 7 11 11 C 1.38240 * 119.99559 * 0.51156 * 10 9 8 12 12 C 1.38232 * 120.00197 * 359.74087 * 11 10 9 13 13 C 1.38240 * 119.99927 * 90.00266 * 8 7 6 14 14 C 1.34772 * 120.00036 * 62.32444 * 6 3 2 15 15 O 1.21593 * 120.00018 * 355.09356 * 14 6 3 16 16 N 1.34771 * 120.00379 * 175.08898 * 14 6 3 17 17 C 1.46494 * 120.00615 * 184.86731 * 16 14 6 18 18 C 1.53004 * 109.47319 * 180.02562 * 17 16 14 19 19 C 1.53002 * 109.47194 * 180.02562 * 18 17 16 20 20 C 1.50692 * 109.47164 * 179.97438 * 19 18 17 21 21 H 1.07997 * 120.00384 * 0.02562 * 20 19 18 22 22 C 1.37887 * 119.99924 * 179.97438 * 20 19 18 23 23 N 1.31507 * 119.99767 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 119.99831 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47373 * 89.99992 * 24 22 20 26 26 H 1.48507 * 109.47341 * 210.00137 * 24 22 20 27 27 H 1.48503 * 109.47575 * 329.99906 * 24 22 20 28 28 H 1.09004 * 109.46897 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47577 * 299.99568 * 1 2 3 30 30 H 1.09003 * 109.47807 * 59.99832 * 1 2 3 31 31 H 1.09003 * 109.47140 * 240.00780 * 2 1 3 32 32 H 1.08992 * 109.47467 * 119.99849 * 2 1 3 33 33 H 1.08998 * 109.47491 * 295.94379 * 5 3 2 34 34 H 1.09004 * 109.47189 * 55.94606 * 5 3 2 35 35 H 1.09006 * 109.46900 * 175.94471 * 5 3 2 36 36 H 1.08999 * 109.47635 * 150.00011 * 7 6 3 37 37 H 1.09003 * 109.47088 * 29.99325 * 7 6 3 38 38 H 1.07998 * 119.99721 * 359.97438 * 9 8 7 39 39 H 1.07991 * 120.00356 * 180.23234 * 10 9 8 40 40 H 1.07994 * 119.99949 * 179.72900 * 11 10 9 41 41 H 1.08000 * 120.00298 * 179.97438 * 12 11 10 42 42 H 1.07996 * 120.00091 * 359.97438 * 13 8 7 43 43 H 0.97006 * 119.99777 * 4.86704 * 16 14 6 44 44 H 1.09004 * 109.47119 * 300.00536 * 17 16 14 45 45 H 1.08998 * 109.47103 * 59.99721 * 17 16 14 46 46 H 1.08997 * 109.47230 * 299.99610 * 18 17 16 47 47 H 1.08998 * 109.46993 * 60.00206 * 18 17 16 48 48 H 1.09004 * 109.47126 * 300.00384 * 19 18 17 49 49 H 1.09003 * 109.46788 * 59.99487 * 19 18 17 50 50 H 0.97003 * 119.99992 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6030 1.9823 -0.8402 5 6 3.5644 1.4446 -0.1296 6 7 1.6555 2.0964 1.2534 7 6 0.7649 3.2593 1.2299 8 6 1.5856 4.5183 1.1184 9 6 2.0147 5.1671 2.2611 10 6 2.7716 6.3193 2.1588 11 6 3.0904 6.8286 0.9138 12 6 2.6570 6.1827 -0.2288 13 6 1.9044 5.0275 -0.1266 14 6 2.1212 1.6280 2.4282 15 8 2.7870 0.6109 2.4562 16 7 1.8490 2.2868 3.5719 17 6 2.4425 1.8391 4.8343 18 6 1.9747 2.7517 5.9698 19 6 2.5950 2.2845 7.2881 20 6 2.1348 3.1838 8.4063 21 1 1.4664 4.0060 8.1978 22 6 2.5663 2.9561 9.6960 23 7 3.3798 1.9546 9.9500 24 14 1.9953 4.0704 11.0822 25 1 0.7440 3.5280 11.6697 26 1 3.0461 4.1359 12.1295 27 1 1.7419 5.4332 10.5495 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8899 30 1 -0.3635 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 4.0042 0.9680 0.7464 34 1 3.8535 0.8953 -1.0257 35 1 3.9215 2.4719 -0.2021 36 1 0.1796 3.2874 2.1489 37 1 0.0941 3.1859 0.3738 38 1 1.7614 4.7720 3.2337 39 1 3.1100 6.8241 3.0515 40 1 3.6780 7.7311 0.8340 41 1 2.9057 6.5808 -1.2015 42 1 1.5658 4.5229 -1.0193 43 1 1.2601 3.0575 3.5593 44 1 2.1303 0.8151 5.0395 45 1 3.5291 1.8795 4.7594 46 1 2.2866 3.7758 5.7648 47 1 0.8881 2.7109 6.0445 48 1 2.2836 1.2603 7.4933 49 1 3.6817 2.3256 7.2129 50 1 3.6837 1.7946 10.8572 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172133902.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:04 Heat of formation + Delta-G solvation = -37.505218 kcal Electronic energy + Delta-G solvation = -27346.783028 eV Core-core repulsion = 23758.644143 eV Total energy + Delta-G solvation = -3588.138885 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.68649 -39.88573 -37.91415 -36.68064 -35.52523 -34.50087 -32.80364 -31.93074 -31.73883 -30.66865 -28.50380 -26.91551 -25.29755 -24.36879 -23.54664 -22.88475 -22.38253 -22.01411 -20.51419 -18.69074 -18.50290 -17.67228 -17.41140 -16.80691 -16.53558 -16.24147 -15.98092 -15.86450 -15.54795 -15.23983 -14.82061 -14.48272 -14.33790 -14.25462 -14.06687 -14.03869 -13.74028 -13.60202 -13.45071 -13.25925 -12.93251 -12.76464 -12.69877 -12.54618 -12.37649 -12.25078 -12.04681 -11.85856 -11.82489 -11.69230 -11.63676 -11.52140 -11.21887 -10.73883 -10.55589 -10.14481 -9.78350 -9.72360 -9.45282 -8.19397 -6.30943 0.38759 0.53644 1.41324 1.42811 1.53675 1.72759 2.20198 2.41692 2.80502 3.12321 3.14356 3.82041 3.84474 3.91470 4.10326 4.17898 4.20134 4.21808 4.23794 4.27985 4.33043 4.53954 4.54329 4.59850 4.68504 4.69700 4.76840 4.80811 4.81793 4.94299 4.98082 5.04892 5.10768 5.13726 5.16328 5.17201 5.27722 5.38187 5.44059 5.48289 5.57767 5.59477 5.62850 5.66460 5.69867 5.82387 5.83736 5.98979 6.14171 6.22329 6.85844 7.01082 7.38525 7.63457 8.92822 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.012128 B = 0.003258 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.125074 B = 8591.902309 C =10233.139548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.143 4.143 3 C 0.168 3.832 4 H 0.120 0.880 5 C -0.165 4.165 6 N -0.610 5.610 7 C 0.146 3.854 8 C -0.115 4.115 9 C -0.123 4.123 10 C -0.136 4.136 11 C -0.126 4.126 12 C -0.127 4.127 13 C -0.104 4.104 14 C 0.702 3.298 15 O -0.623 6.623 16 N -0.736 5.736 17 C 0.151 3.849 18 C -0.100 4.100 19 C 0.026 3.974 20 C -0.540 4.540 21 H 0.066 0.934 22 C -0.003 4.003 23 N -0.935 5.935 24 Si 0.967 3.033 25 H -0.272 1.272 26 H -0.285 1.285 27 H -0.260 1.260 28 H 0.048 0.952 29 H 0.040 0.960 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.041 0.959 34 H 0.079 0.921 35 H 0.050 0.950 36 H 0.083 0.917 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.122 0.878 40 H 0.135 0.865 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.403 0.597 44 H 0.046 0.954 45 H 0.043 0.957 46 H 0.065 0.935 47 H 0.066 0.934 48 H -0.008 1.008 49 H -0.009 1.009 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.010 7.475 -27.677 29.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.182 4.182 3 C 0.065 3.935 4 H 0.137 0.863 5 C -0.223 4.223 6 N -0.346 5.346 7 C 0.024 3.976 8 C -0.117 4.117 9 C -0.142 4.142 10 C -0.154 4.154 11 C -0.144 4.144 12 C -0.144 4.144 13 C -0.122 4.122 14 C 0.403 3.597 15 O -0.504 6.504 16 N -0.394 5.394 17 C 0.026 3.974 18 C -0.138 4.138 19 C -0.012 4.012 20 C -0.578 4.578 21 H 0.084 0.916 22 C -0.200 4.200 23 N -0.575 5.575 24 Si 0.791 3.209 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.184 1.184 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.141 0.859 38 H 0.130 0.870 39 H 0.140 0.860 40 H 0.153 0.847 41 H 0.162 0.838 42 H 0.164 0.836 43 H 0.241 0.759 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.010 0.990 49 H 0.010 0.990 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.445 6.646 -27.532 29.047 hybrid contribution 0.113 0.491 1.553 1.632 sum -6.333 7.137 -25.980 27.676 Atomic orbital electron populations 1.21667 0.94763 1.01528 1.01848 1.21981 0.96913 0.96678 1.02603 1.21082 0.94646 0.93307 0.84462 0.86270 1.22160 0.96223 1.01569 1.02390 1.47289 1.51318 1.31551 1.04426 1.20682 0.90571 0.80995 1.05363 1.20364 1.00587 0.96940 0.93767 1.21234 0.98564 0.96082 0.98286 1.21361 0.98726 0.96716 0.98633 1.21452 0.99831 1.00595 0.92505 1.21470 0.97925 0.95815 0.99234 1.21287 0.97791 0.96061 0.97050 1.16123 0.79821 0.82650 0.81075 1.90833 1.46237 1.26899 1.86386 1.45402 1.53040 1.34680 1.06305 1.21023 0.96633 0.97793 0.81912 1.21583 1.00584 0.98419 0.93177 1.18915 0.94734 0.95377 0.92142 1.21659 1.28737 1.14120 0.93284 0.91561 1.26020 0.95105 0.96955 1.01963 1.70114 1.34819 1.31384 1.21199 0.85420 0.77913 0.79340 0.78204 1.19795 1.21037 1.18389 0.93248 0.94108 0.90619 0.90010 0.93254 0.93998 0.90176 0.93064 0.89847 0.85882 0.87015 0.85954 0.84679 0.83802 0.83624 0.75883 0.93592 0.93876 0.91672 0.91525 0.98986 0.99044 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.80 71.98 0.71 -1.59 16 2 C -0.14 -2.86 5.31 30.60 0.16 -2.70 16 3 C 0.17 3.06 2.66 44.99 0.12 3.18 16 4 H 0.12 1.30 7.81 -2.39 -0.02 1.28 16 5 C -0.17 -3.57 9.14 71.98 0.66 -2.91 16 6 N -0.61 -13.11 1.87 -820.06 -1.53 -14.64 16 7 C 0.15 2.23 5.32 85.63 0.46 2.68 16 8 C -0.12 -1.98 5.46 -19.87 -0.11 -2.09 16 9 C -0.12 -2.59 9.42 22.27 0.21 -2.38 16 10 C -0.14 -2.80 10.05 22.27 0.22 -2.57 16 11 C -0.13 -2.13 10.05 22.27 0.22 -1.90 16 12 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 13 C -0.10 -1.44 9.70 22.27 0.22 -1.23 16 14 C 0.70 21.83 7.65 179.06 1.37 23.20 16 15 O -0.62 -24.51 12.53 -4.01 -0.05 -24.56 16 16 N -0.74 -22.33 5.22 -478.54 -2.50 -24.82 16 17 C 0.15 5.69 5.68 86.38 0.49 6.18 16 18 C -0.10 -3.98 5.27 30.60 0.16 -3.82 16 19 C 0.03 1.38 4.97 29.85 0.15 1.53 16 20 C -0.54 -30.43 9.11 25.60 0.23 -30.20 16 21 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 22 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 23 N -0.93 -57.66 13.29 21.45 0.28 -57.38 16 24 Si 0.97 44.08 29.54 68.60 2.03 46.11 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 26 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 27 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 28 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.04 0.76 7.76 -2.39 -0.02 0.75 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 1.44 6.05 -2.39 -0.01 1.42 16 33 H 0.04 1.27 6.06 -2.39 -0.01 1.25 16 34 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.08 1.26 6.44 -2.39 -0.02 1.25 16 37 H 0.12 1.08 7.88 -2.39 -0.02 1.06 16 38 H 0.11 2.48 6.03 -2.91 -0.02 2.46 16 39 H 0.12 2.41 8.06 -2.92 -0.02 2.38 16 40 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 41 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 42 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 43 H 0.40 10.05 4.11 -92.70 -0.38 9.66 16 44 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 45 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 47 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 48 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 49 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 50 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -73.29 398.84 4.71 -68.58 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 0.52 Total: 22.62 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: 5.96 Total: -15.90 kcal Atomic # 7 Polarization: -93.10 SS G_CDS: -3.74 Total: -96.84 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.05 Total: -24.56 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -73.29 4.71 -68.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172133902.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.078 kcal (2) G-P(sol) polarization free energy of solvation -73.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds