Wall clock time and date at job start Tue Mar 31 2020 13:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.49995 * 2 1 4 4 C 1.53035 * 109.50154 * 120.07849 * 2 1 3 5 5 N 1.46841 * 109.52172 * 179.12336 * 4 2 1 6 6 C 1.46900 * 111.00137 * 174.16263 * 5 4 2 7 7 C 1.50701 * 109.47161 * 169.99821 * 6 5 4 8 8 C 1.38283 * 119.92432 * 90.00509 * 7 6 5 9 9 C 1.38103 * 120.07475 * 179.97438 * 8 7 6 10 10 C 1.38917 * 119.92633 * 359.97438 * 9 8 7 11 11 N 1.39676 * 120.07810 * 179.97438 * 10 9 8 12 12 C 1.46496 * 119.99572 * 359.97438 * 11 10 9 13 13 C 1.46491 * 119.99974 * 179.97438 * 11 10 9 14 14 C 1.50702 * 109.46957 * 269.99502 * 13 11 10 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 11 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.38917 * 119.84501 * 0.25298 * 10 9 8 23 23 C 1.38101 * 119.92695 * 359.49574 * 22 10 9 24 24 C 1.46856 * 111.19867 * 298.25702 * 5 4 2 25 25 C 1.53034 * 109.52220 * 61.74123 * 24 5 4 26 26 C 1.53113 * 109.50400 * 239.88406 * 2 1 3 27 27 H 1.09005 * 109.52554 * 302.30734 * 26 2 1 28 28 O 1.42898 * 109.52644 * 62.43339 * 26 2 1 29 29 H 1.08996 * 109.47390 * 299.92153 * 1 2 3 30 30 H 1.09001 * 109.47066 * 59.92504 * 1 2 3 31 31 H 1.09005 * 109.47091 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46123 * 59.10644 * 4 2 1 33 33 H 1.09002 * 109.46597 * 299.13774 * 4 2 1 34 34 H 1.09001 * 109.47258 * 49.99892 * 6 5 4 35 35 H 1.09000 * 109.46908 * 289.99733 * 6 5 4 36 36 H 1.08000 * 119.96597 * 359.97438 * 8 7 6 37 37 H 1.07995 * 120.04209 * 179.97438 * 9 8 7 38 38 H 1.09000 * 109.47583 * 270.00161 * 12 11 10 39 39 H 1.09005 * 109.47610 * 30.00634 * 12 11 10 40 40 H 1.09006 * 109.46979 * 150.00170 * 12 11 10 41 41 H 1.09004 * 109.47166 * 149.99767 * 13 11 10 42 42 H 1.08994 * 109.47507 * 29.99474 * 13 11 10 43 43 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 44 44 H 1.08002 * 120.03205 * 179.72697 * 22 10 9 45 45 H 1.07999 * 119.96139 * 180.25385 * 23 22 10 46 46 H 1.09001 * 109.46387 * 181.75896 * 24 5 4 47 47 H 1.08998 * 109.45887 * 301.72637 * 24 5 4 48 48 H 1.09002 * 109.50341 * 180.88404 * 25 24 5 49 49 H 1.09003 * 109.53337 * 60.78299 * 25 24 5 50 50 H 0.96699 * 114.00539 * 180.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0409 -0.7230 1.2483 5 7 3.5092 -0.7416 1.2382 6 6 4.0372 -1.3050 2.4879 7 6 5.5198 -1.5361 2.3478 8 6 6.4096 -0.5356 2.6933 9 6 7.7689 -0.7442 2.5667 10 6 8.2420 -1.9611 2.0921 11 7 9.6161 -2.1754 1.9622 12 6 10.5602 -1.1159 2.3262 13 6 10.1132 -3.4594 1.4621 14 6 10.3315 -4.3989 2.6201 15 1 10.1206 -4.0723 3.6277 16 6 10.7945 -5.6776 2.3925 17 7 11.0509 -6.0755 1.1655 18 14 11.0578 -6.8446 3.8271 19 1 9.7716 -7.0505 4.5403 20 1 11.5571 -8.1479 3.3197 21 1 12.0545 -6.2632 4.7619 22 6 7.3451 -2.9623 1.7415 23 6 5.9873 -2.7488 1.8755 24 6 4.0230 -1.4729 0.0729 25 6 3.5712 -0.7723 -1.2105 26 6 2.0413 -0.7242 -1.2484 27 1 1.6453 -1.7396 -1.2684 28 8 1.6132 -0.0217 -2.4169 29 1 -0.3634 0.5126 0.8906 30 1 -0.3633 0.5150 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6648 -1.7460 1.2550 33 1 1.6905 -0.2015 2.1390 34 1 3.5401 -2.2520 2.6981 35 1 3.8538 -0.6088 3.3063 36 1 6.0412 0.4101 3.0626 37 1 8.4634 0.0376 2.8362 38 1 10.7598 -0.4920 1.4550 39 1 10.1318 -0.5045 3.1205 40 1 11.4915 -1.5629 2.6740 41 1 11.0558 -3.3046 0.9372 42 1 9.3826 -3.8902 0.7776 43 1 11.3770 -6.9749 1.0055 44 1 7.7095 -3.9079 1.3680 45 1 5.2897 -3.5283 1.6070 46 1 5.1121 -1.4961 0.1099 47 1 3.6376 -2.4924 0.0852 48 1 3.9395 -1.3242 -2.0753 49 1 3.9678 0.2428 -1.2305 50 1 1.9018 -0.4259 -3.2467 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190051706.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:24 Heat of formation + Delta-G solvation = -21.972579 kcal Electronic energy + Delta-G solvation = -26975.818025 eV Core-core repulsion = 23388.352686 eV Total energy + Delta-G solvation = -3587.465339 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.90865 -38.83511 -36.82792 -35.49921 -33.47669 -32.67698 -31.73160 -30.47758 -29.70850 -27.83919 -26.57964 -26.07565 -24.45343 -23.09196 -22.69014 -21.53249 -21.18921 -19.89117 -19.52511 -17.50194 -16.65918 -16.46311 -15.95512 -15.41217 -15.31490 -14.94539 -14.75209 -14.28065 -14.14175 -13.81262 -13.72514 -13.46420 -13.33152 -13.00143 -12.91801 -12.87974 -12.27131 -12.19485 -11.94421 -11.89662 -11.70688 -11.51149 -11.41939 -11.27375 -11.22304 -10.98083 -10.93458 -10.69639 -10.64610 -10.35685 -10.29183 -9.95768 -9.91799 -9.76070 -8.87314 -8.53411 -8.31296 -8.24453 -6.49238 -6.04699 -4.20615 2.06688 2.17784 3.25554 3.30058 3.33310 3.88016 4.01565 4.12197 4.38345 4.49753 4.60026 4.65218 4.87243 5.00325 5.15832 5.18439 5.26490 5.28358 5.30718 5.32740 5.47011 5.53088 5.57178 5.61182 5.62044 5.72202 5.78561 5.80721 5.87487 5.98841 6.00621 6.05798 6.06611 6.10818 6.22227 6.26108 6.37009 6.40035 6.61598 6.89606 6.97654 7.06274 7.15070 7.17792 7.23827 7.32844 7.44600 7.56161 7.77758 8.12246 8.23489 8.45438 8.88139 9.46240 10.92540 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.019125 B = 0.002667 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.690121 B =10496.807333 C =10727.949643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 H 0.085 0.915 4 C 0.061 3.939 5 N -0.534 5.534 6 C 0.111 3.889 7 C -0.175 4.175 8 C -0.051 4.051 9 C -0.223 4.223 10 C 0.243 3.757 11 N -0.615 5.615 12 C 0.098 3.902 13 C 0.249 3.751 14 C -0.532 4.532 15 H 0.059 0.941 16 C 0.062 3.938 17 N -0.895 5.895 18 Si 0.897 3.103 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.277 1.277 22 C -0.188 4.188 23 C -0.067 4.067 24 C 0.055 3.945 25 C -0.149 4.149 26 C 0.108 3.892 27 H 0.049 0.951 28 O -0.567 6.567 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.032 0.968 33 H 0.078 0.922 34 H 0.034 0.966 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.036 0.964 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.030 0.970 42 H 0.036 0.964 43 H 0.265 0.735 44 H 0.131 0.869 45 H 0.106 0.894 46 H 0.095 0.905 47 H 0.029 0.971 48 H 0.067 0.933 49 H 0.078 0.922 50 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.684 11.077 -2.668 20.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.099 4.099 3 H 0.103 0.897 4 C -0.067 4.067 5 N -0.258 5.258 6 C -0.015 4.015 7 C -0.178 4.178 8 C -0.070 4.070 9 C -0.246 4.246 10 C 0.136 3.864 11 N -0.320 5.320 12 C -0.046 4.046 13 C 0.129 3.871 14 C -0.571 4.571 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.724 3.276 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.210 4.210 23 C -0.086 4.086 24 C -0.073 4.073 25 C -0.187 4.187 26 C 0.050 3.950 27 H 0.067 0.933 28 O -0.372 6.372 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.097 0.903 34 H 0.052 0.948 35 H 0.094 0.906 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.048 0.952 42 H 0.053 0.947 43 H 0.074 0.926 44 H 0.149 0.851 45 H 0.124 0.876 46 H 0.113 0.887 47 H 0.048 0.952 48 H 0.085 0.915 49 H 0.097 0.903 50 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -16.462 11.736 -2.383 20.357 hybrid contribution 0.353 -2.076 0.448 2.153 sum -16.109 9.660 -1.934 18.883 Atomic orbital electron populations 1.21738 0.94601 1.01620 1.02060 1.21114 0.95580 1.00882 0.92275 0.89689 1.22120 0.87999 0.98759 0.97835 1.62069 1.06672 1.54461 1.02635 1.20835 0.91953 0.97496 0.91243 1.19134 0.93652 0.95454 1.09580 1.20496 0.92113 0.97272 0.97140 1.20578 0.95586 0.97434 1.11030 1.17963 0.84481 0.92763 0.91219 1.47112 1.01413 1.15893 1.67617 1.21480 0.93804 0.90692 0.98640 1.19280 0.94875 0.78346 0.94564 1.21542 1.44373 0.97315 0.93871 0.92321 1.24963 0.95238 0.97997 0.95858 1.69922 1.45076 1.19041 1.19364 0.86578 0.78689 0.79903 0.82420 1.20104 1.21173 1.20218 1.20844 0.92171 1.00200 1.07834 1.20669 0.94772 0.95718 0.97488 1.22137 1.02017 0.94153 0.89004 1.22328 0.95868 1.02644 0.97843 1.21906 0.93191 0.94302 0.85648 0.93301 1.86488 1.78927 1.55846 1.15986 0.92676 0.91751 0.93108 0.94987 0.90312 0.94820 0.90618 0.87176 0.86856 0.94570 0.92639 0.91445 0.95191 0.94654 0.92572 0.85119 0.87552 0.88722 0.95239 0.91458 0.90297 0.77742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.07 37.16 0.34 -0.88 16 2 C -0.08 -0.79 2.61 -90.54 -0.24 -1.02 16 3 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 4 C 0.06 0.61 4.71 -3.84 -0.02 0.60 16 5 N -0.53 -6.39 4.80 -236.11 -1.13 -7.52 16 6 C 0.11 1.39 5.43 -4.98 -0.03 1.37 16 7 C -0.18 -2.64 4.12 -104.59 -0.43 -3.07 16 8 C -0.05 -0.79 9.69 -39.61 -0.38 -1.17 16 9 C -0.22 -3.83 9.21 -39.38 -0.36 -4.19 16 10 C 0.24 4.83 6.55 -83.78 -0.55 4.28 16 11 N -0.61 -13.01 2.99 -181.00 -0.54 -13.56 16 12 C 0.10 1.70 10.19 59.84 0.61 2.31 16 13 C 0.25 6.18 4.92 -5.20 -0.03 6.15 16 14 C -0.53 -14.39 9.39 -34.44 -0.32 -14.72 16 15 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.90 -25.45 13.29 55.43 0.74 -24.71 16 18 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 C -0.19 -3.71 9.21 -39.38 -0.36 -4.07 16 23 C -0.07 -1.11 7.78 -39.61 -0.31 -1.42 16 24 C 0.05 0.67 4.58 -3.83 -0.02 0.65 16 25 C -0.15 -1.58 5.72 -26.65 -0.15 -1.73 16 26 C 0.11 1.07 2.94 -26.61 -0.08 0.99 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 O -0.57 -5.48 12.77 -35.23 -0.45 -5.93 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.59 7.76 -51.93 -0.40 0.18 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 34 H 0.03 0.41 8.02 -51.93 -0.42 0.00 16 35 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 36 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 37 H 0.11 1.77 6.14 -52.49 -0.32 1.44 16 38 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.05 0.85 6.20 -51.93 -0.32 0.53 16 40 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 41 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 42 H 0.04 0.93 6.18 -51.93 -0.32 0.60 16 43 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 44 H 0.13 2.86 6.14 -52.49 -0.32 2.54 16 45 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 46 H 0.09 1.36 5.64 -51.93 -0.29 1.06 16 47 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 49 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.38 2.20 9.09 45.56 0.41 2.61 16 LS Contribution 389.32 15.07 5.87 5.87 Total: -1.00 -29.23 389.32 -10.83 -40.06 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -7.86 Total: 3.99 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -2.43 Total: -14.33 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -0.94 Total: -45.79 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -0.45 Total: -5.93 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.23 -10.83 -40.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190051706.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.084 kcal (2) G-P(sol) polarization free energy of solvation -29.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds