Wall clock time and date at job start Tue Mar 31 2020 13:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.49995 * 2 1 4 4 C 1.53035 * 109.50154 * 120.07849 * 2 1 3 5 5 N 1.46841 * 109.52172 * 179.12336 * 4 2 1 6 6 C 1.46900 * 111.00137 * 174.16263 * 5 4 2 7 7 C 1.50701 * 109.47161 * 169.99821 * 6 5 4 8 8 C 1.38283 * 119.92432 * 90.00509 * 7 6 5 9 9 C 1.38103 * 120.07475 * 179.97438 * 8 7 6 10 10 C 1.38917 * 119.92633 * 359.97438 * 9 8 7 11 11 N 1.39676 * 120.07810 * 179.97438 * 10 9 8 12 12 C 1.46496 * 119.99572 * 359.97438 * 11 10 9 13 13 C 1.46491 * 119.99974 * 179.97438 * 11 10 9 14 14 C 1.50702 * 109.46957 * 269.99502 * 13 11 10 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 11 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.38917 * 119.84501 * 0.25298 * 10 9 8 23 23 C 1.38101 * 119.92695 * 359.49574 * 22 10 9 24 24 C 1.46856 * 111.19867 * 298.25702 * 5 4 2 25 25 C 1.53034 * 109.52220 * 61.74123 * 24 5 4 26 26 C 1.53113 * 109.50400 * 239.88406 * 2 1 3 27 27 H 1.09005 * 109.52554 * 302.30734 * 26 2 1 28 28 O 1.42898 * 109.52644 * 62.43339 * 26 2 1 29 29 H 1.08996 * 109.47390 * 299.92153 * 1 2 3 30 30 H 1.09001 * 109.47066 * 59.92504 * 1 2 3 31 31 H 1.09005 * 109.47091 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46123 * 59.10644 * 4 2 1 33 33 H 1.09002 * 109.46597 * 299.13774 * 4 2 1 34 34 H 1.09001 * 109.47258 * 49.99892 * 6 5 4 35 35 H 1.09000 * 109.46908 * 289.99733 * 6 5 4 36 36 H 1.08000 * 119.96597 * 359.97438 * 8 7 6 37 37 H 1.07995 * 120.04209 * 179.97438 * 9 8 7 38 38 H 1.09000 * 109.47583 * 270.00161 * 12 11 10 39 39 H 1.09005 * 109.47610 * 30.00634 * 12 11 10 40 40 H 1.09006 * 109.46979 * 150.00170 * 12 11 10 41 41 H 1.09004 * 109.47166 * 149.99767 * 13 11 10 42 42 H 1.08994 * 109.47507 * 29.99474 * 13 11 10 43 43 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 44 44 H 1.08002 * 120.03205 * 179.72697 * 22 10 9 45 45 H 1.07999 * 119.96139 * 180.25385 * 23 22 10 46 46 H 1.09001 * 109.46387 * 181.75896 * 24 5 4 47 47 H 1.08998 * 109.45887 * 301.72637 * 24 5 4 48 48 H 1.09002 * 109.50341 * 180.88404 * 25 24 5 49 49 H 1.09003 * 109.53337 * 60.78299 * 25 24 5 50 50 H 0.96699 * 114.00539 * 180.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0409 -0.7230 1.2483 5 7 3.5092 -0.7416 1.2382 6 6 4.0372 -1.3050 2.4879 7 6 5.5198 -1.5361 2.3478 8 6 6.4096 -0.5356 2.6933 9 6 7.7689 -0.7442 2.5667 10 6 8.2420 -1.9611 2.0921 11 7 9.6161 -2.1754 1.9622 12 6 10.5602 -1.1159 2.3262 13 6 10.1132 -3.4594 1.4621 14 6 10.3315 -4.3989 2.6201 15 1 10.1206 -4.0723 3.6277 16 6 10.7945 -5.6776 2.3925 17 7 11.0509 -6.0755 1.1655 18 14 11.0578 -6.8446 3.8271 19 1 9.7716 -7.0505 4.5403 20 1 11.5571 -8.1479 3.3197 21 1 12.0545 -6.2632 4.7619 22 6 7.3451 -2.9623 1.7415 23 6 5.9873 -2.7488 1.8755 24 6 4.0230 -1.4729 0.0729 25 6 3.5712 -0.7723 -1.2105 26 6 2.0413 -0.7242 -1.2484 27 1 1.6453 -1.7396 -1.2684 28 8 1.6132 -0.0217 -2.4169 29 1 -0.3634 0.5126 0.8906 30 1 -0.3633 0.5150 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6648 -1.7460 1.2550 33 1 1.6905 -0.2015 2.1390 34 1 3.5401 -2.2520 2.6981 35 1 3.8538 -0.6088 3.3063 36 1 6.0412 0.4101 3.0626 37 1 8.4634 0.0376 2.8362 38 1 10.7598 -0.4920 1.4550 39 1 10.1318 -0.5045 3.1205 40 1 11.4915 -1.5629 2.6740 41 1 11.0558 -3.3046 0.9372 42 1 9.3826 -3.8902 0.7776 43 1 11.3770 -6.9749 1.0055 44 1 7.7095 -3.9079 1.3680 45 1 5.2897 -3.5283 1.6070 46 1 5.1121 -1.4961 0.1099 47 1 3.6376 -2.4924 0.0852 48 1 3.9395 -1.3242 -2.0753 49 1 3.9678 0.2428 -1.2305 50 1 1.9018 -0.4259 -3.2467 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190051706.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:23 Heat of formation + Delta-G solvation = -40.047326 kcal Electronic energy + Delta-G solvation = -26976.601805 eV Core-core repulsion = 23388.352686 eV Total energy + Delta-G solvation = -3588.249119 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.95363 -40.03212 -37.92902 -36.75133 -34.86628 -34.18634 -32.66983 -31.89589 -30.95834 -29.62420 -27.62385 -27.10066 -26.01700 -24.37892 -23.74174 -22.97437 -22.28631 -20.90408 -20.71791 -18.64184 -18.26755 -18.06481 -16.95052 -16.81946 -16.45074 -16.25298 -15.79149 -15.60624 -15.35519 -15.27316 -14.75470 -14.65468 -14.44165 -14.29776 -14.14721 -13.99257 -13.69128 -13.30231 -13.18587 -13.10900 -12.87665 -12.78180 -12.74328 -12.66421 -12.53485 -12.42055 -12.16165 -12.12373 -11.86227 -11.75374 -11.62400 -11.40682 -11.13418 -10.75324 -10.64902 -10.38520 -9.66160 -9.21279 -8.36725 -7.80365 -6.38457 0.69132 0.82065 1.36560 1.38115 1.46504 2.33302 2.62678 2.87187 3.05244 3.27173 3.33804 3.75037 3.80648 4.02110 4.04069 4.12708 4.22118 4.24866 4.37294 4.41632 4.45118 4.50778 4.59024 4.63431 4.70505 4.71307 4.71852 4.80501 4.85901 4.87645 4.90690 4.93709 5.01188 5.07860 5.12464 5.16562 5.18814 5.21438 5.32254 5.36717 5.43851 5.57973 5.65706 5.69199 5.89957 6.06187 6.13420 6.17731 6.25963 6.49097 6.81592 6.87963 6.92747 7.33382 8.82146 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.019125 B = 0.002667 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.690121 B =10496.807333 C =10727.949643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.079 4.079 3 H 0.071 0.929 4 C 0.063 3.937 5 N -0.539 5.539 6 C 0.113 3.887 7 C -0.160 4.160 8 C -0.048 4.048 9 C -0.218 4.218 10 C 0.215 3.785 11 N -0.632 5.632 12 C 0.098 3.902 13 C 0.267 3.733 14 C -0.542 4.542 15 H 0.049 0.951 16 C 0.013 3.987 17 N -0.927 5.927 18 Si 0.961 3.039 19 H -0.273 1.273 20 H -0.279 1.279 21 H -0.269 1.269 22 C -0.215 4.215 23 C -0.064 4.064 24 C 0.057 3.943 25 C -0.143 4.143 26 C 0.112 3.888 27 H 0.055 0.945 28 O -0.578 6.578 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.037 0.963 33 H 0.093 0.907 34 H 0.040 0.960 35 H 0.094 0.906 36 H 0.141 0.859 37 H 0.132 0.868 38 H 0.052 0.948 39 H 0.079 0.921 40 H 0.056 0.944 41 H 0.009 0.991 42 H 0.011 0.989 43 H 0.267 0.733 44 H 0.095 0.905 45 H 0.117 0.883 46 H 0.069 0.931 47 H 0.030 0.970 48 H 0.075 0.925 49 H 0.065 0.935 50 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.802 12.323 -1.266 22.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.098 4.098 3 H 0.089 0.911 4 C -0.065 4.065 5 N -0.264 5.264 6 C -0.013 4.013 7 C -0.163 4.163 8 C -0.067 4.067 9 C -0.241 4.241 10 C 0.110 3.890 11 N -0.340 5.340 12 C -0.045 4.045 13 C 0.145 3.855 14 C -0.580 4.580 15 H 0.067 0.933 16 C -0.187 4.187 17 N -0.566 5.566 18 Si 0.786 3.214 19 H -0.198 1.198 20 H -0.204 1.204 21 H -0.194 1.194 22 C -0.238 4.238 23 C -0.084 4.084 24 C -0.071 4.071 25 C -0.182 4.182 26 C 0.053 3.947 27 H 0.073 0.927 28 O -0.386 6.386 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.111 0.889 34 H 0.058 0.942 35 H 0.113 0.887 36 H 0.159 0.841 37 H 0.150 0.850 38 H 0.070 0.930 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.027 0.973 42 H 0.029 0.971 43 H 0.076 0.924 44 H 0.113 0.887 45 H 0.135 0.865 46 H 0.088 0.912 47 H 0.048 0.952 48 H 0.094 0.906 49 H 0.084 0.916 50 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -18.605 13.012 -0.984 22.725 hybrid contribution 0.885 -2.389 -0.047 2.547 sum -17.721 10.623 -1.031 20.687 Atomic orbital electron populations 1.21682 0.93430 1.02054 1.02287 1.21102 0.96506 0.99975 0.92223 0.91068 1.22170 0.86505 0.99254 0.98540 1.62074 1.08067 1.54171 1.02070 1.20863 0.89795 0.98509 0.92137 1.19452 0.95486 0.94295 1.07021 1.20871 0.91345 0.98426 0.96086 1.20809 0.96842 0.96503 1.09930 1.18215 0.83806 0.94089 0.92905 1.46971 1.02630 1.15337 1.69014 1.21602 0.92842 0.90036 1.00033 1.18762 0.93089 0.80135 0.93487 1.21746 1.44232 0.98160 0.93907 0.93270 1.25783 0.94899 0.99588 0.98403 1.70032 1.45801 1.19541 1.21258 0.85563 0.78687 0.77905 0.79268 1.19815 1.20401 1.19365 1.20727 0.93868 0.99275 1.09895 1.20777 0.93531 0.96956 0.97100 1.22045 1.00469 0.94533 0.90051 1.22274 0.96740 1.01699 0.97444 1.21852 0.92278 0.94607 0.85961 0.92740 1.86457 1.79014 1.56358 1.16801 0.91500 0.92507 0.92534 0.94513 0.88887 0.94206 0.88738 0.84090 0.85006 0.92995 0.90285 0.92523 0.97340 0.97114 0.92375 0.88729 0.86455 0.91227 0.95222 0.90618 0.91626 0.75928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.07 71.98 0.65 -1.34 16 2 C -0.08 -1.39 2.61 -10.74 -0.03 -1.42 16 3 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 4 C 0.06 1.09 4.71 86.33 0.41 1.49 16 5 N -0.54 -11.58 4.80 -900.93 -4.32 -15.91 16 6 C 0.11 2.50 5.43 85.56 0.46 2.96 16 7 C -0.16 -4.52 4.12 -19.84 -0.08 -4.60 16 8 C -0.05 -1.36 9.69 22.25 0.22 -1.15 16 9 C -0.22 -7.17 9.21 22.40 0.21 -6.96 16 10 C 0.21 8.70 6.55 38.22 0.25 8.95 16 11 N -0.63 -27.66 2.99 -726.56 -2.17 -29.84 16 12 C 0.10 3.40 10.19 127.77 1.30 4.71 16 13 C 0.27 14.04 4.92 85.64 0.42 14.46 16 14 C -0.54 -30.43 9.39 25.60 0.24 -30.19 16 15 H 0.05 2.80 7.81 -2.91 -0.02 2.77 16 16 C 0.01 0.70 5.46 84.66 0.46 1.17 16 17 N -0.93 -54.38 13.29 21.45 0.28 -54.10 16 18 Si 0.96 43.97 29.54 68.60 2.03 46.00 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 C -0.21 -8.88 9.21 22.40 0.21 -8.67 16 23 C -0.06 -2.14 7.78 22.25 0.17 -1.97 16 24 C 0.06 1.32 4.58 86.32 0.40 1.72 16 25 C -0.14 -2.89 5.72 30.65 0.18 -2.71 16 26 C 0.11 2.00 2.94 30.67 0.09 2.09 16 27 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 28 O -0.58 -10.21 12.77 -148.98 -1.90 -12.11 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.92 7.76 -2.39 -0.02 0.91 16 31 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.09 1.37 8.12 -2.39 -0.02 1.35 16 34 H 0.04 0.85 8.02 -2.39 -0.02 0.83 16 35 H 0.09 1.79 8.08 -2.39 -0.02 1.77 16 36 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 37 H 0.13 3.78 6.14 -2.91 -0.02 3.76 16 38 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.08 2.33 6.20 -2.38 -0.01 2.31 16 40 H 0.06 2.05 8.07 -2.38 -0.02 2.03 16 41 H 0.01 0.48 8.07 -2.38 -0.02 0.46 16 42 H 0.01 0.62 6.18 -2.39 -0.01 0.60 16 43 H 0.27 14.79 8.31 -92.70 -0.77 14.01 16 44 H 0.09 4.53 6.14 -2.91 -0.02 4.52 16 45 H 0.12 3.54 8.06 -2.91 -0.02 3.51 16 46 H 0.07 1.97 5.64 -2.39 -0.01 1.96 16 47 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 48 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 49 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.39 3.93 9.09 -74.06 -0.67 3.26 16 Total: -1.00 -64.74 389.32 -0.30 -65.04 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.24 Total: 22.37 kcal Atomic # 6 Polarization: -27.00 SS G_CDS: 5.55 Total: -21.45 kcal Atomic # 7 Polarization: -93.63 SS G_CDS: -6.21 Total: -99.84 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -1.90 Total: -12.11 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -64.74 -0.30 -65.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190051706.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.990 kcal (2) G-P(sol) polarization free energy of solvation -64.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds