Wall clock time and date at job start Tue Mar 31 2020 13:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47903 * 2 1 4 4 C 1.53093 * 109.48240 * 239.97519 * 2 1 3 5 5 C 1.53178 * 109.16255 * 182.39519 * 4 2 1 6 6 H 1.08992 * 109.54753 * 297.02597 * 5 4 2 7 7 N 1.46895 * 109.54419 * 176.84713 * 5 4 2 8 8 C 1.46903 * 111.00055 * 155.00336 * 7 5 4 9 9 C 1.50705 * 109.46979 * 180.02562 * 8 7 5 10 10 C 1.38285 * 119.92481 * 269.72420 * 9 8 7 11 11 C 1.38102 * 120.07735 * 179.72449 * 10 9 8 12 12 C 1.38914 * 119.91928 * 0.54927 * 11 10 9 13 13 N 1.39679 * 120.07443 * 179.74580 * 12 11 10 14 14 C 1.46498 * 120.00108 * 179.97438 * 13 12 11 15 15 C 1.46508 * 119.99528 * 359.97438 * 13 12 11 16 16 C 1.50699 * 109.46816 * 90.00222 * 15 13 12 17 17 H 1.08003 * 120.00282 * 359.97438 * 16 15 13 18 18 C 1.37872 * 120.00057 * 179.97438 * 16 15 13 19 19 N 1.31520 * 119.99927 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00081 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47071 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47041 * 120.00839 * 20 18 16 23 23 H 1.48503 * 109.47046 * 240.00201 * 20 18 16 24 24 C 1.38908 * 119.85334 * 359.72779 * 12 11 10 25 25 C 1.38105 * 119.92370 * 359.97438 * 24 12 11 26 26 C 1.53178 * 109.03511 * 56.98447 * 5 4 2 27 27 C 1.53096 * 109.16278 * 303.01594 * 26 5 4 28 28 O 1.42904 * 109.47799 * 120.02263 * 2 1 3 29 29 H 1.09002 * 109.46856 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47239 * 300.00199 * 1 2 3 31 31 H 1.08997 * 109.46830 * 60.00367 * 1 2 3 32 32 H 1.09000 * 109.52228 * 302.30500 * 4 2 1 33 33 H 1.08997 * 109.52191 * 62.42994 * 4 2 1 34 34 H 1.00906 * 111.00160 * 278.95988 * 7 5 4 35 35 H 1.08996 * 109.47039 * 299.99559 * 8 7 5 36 36 H 1.08994 * 109.47158 * 60.00149 * 8 7 5 37 37 H 1.08003 * 119.95991 * 359.97438 * 10 9 8 38 38 H 1.07997 * 120.04170 * 180.27187 * 11 10 9 39 39 H 1.08997 * 109.46807 * 90.00147 * 14 13 12 40 40 H 1.08998 * 109.47015 * 209.99482 * 14 13 12 41 41 H 1.08990 * 109.47172 * 329.99858 * 14 13 12 42 42 H 1.08997 * 109.46652 * 209.99862 * 15 13 12 43 43 H 1.08992 * 109.47266 * 329.99875 * 15 13 12 44 44 H 0.97003 * 119.99853 * 179.97438 * 19 18 16 45 45 H 1.08004 * 120.04068 * 180.02562 * 24 12 11 46 46 H 1.08002 * 119.95960 * 180.02562 * 25 24 12 47 47 H 1.08999 * 109.52488 * 62.92180 * 26 5 4 48 48 H 1.09004 * 109.52654 * 183.11392 * 26 5 4 49 49 H 1.09003 * 109.48254 * 177.58780 * 27 26 5 50 50 H 1.08992 * 109.48305 * 297.61902 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2496 5 6 3.5712 -0.7705 -1.2123 6 1 3.9689 0.2439 -1.2426 7 7 4.0673 -1.5275 -2.3693 8 6 5.4370 -1.1240 -2.7144 9 6 5.9106 -1.9197 -3.9034 10 6 6.5656 -3.1224 -3.7120 11 6 6.9959 -3.8570 -4.7994 12 6 6.7801 -3.3807 -6.0864 13 7 7.2186 -4.1184 -7.1884 14 6 6.9897 -3.6149 -8.5450 15 6 7.9076 -5.3957 -6.9876 16 6 6.8965 -6.5129 -6.9604 17 1 5.8458 -6.2934 -7.0803 18 6 7.3127 -7.8152 -6.7825 19 7 8.5921 -8.0825 -6.6360 20 14 6.0593 -9.1999 -6.7481 21 1 4.6969 -8.6390 -6.9334 22 1 6.3521 -10.1598 -7.8427 23 1 6.1328 -9.9017 -5.4415 24 6 6.1269 -2.1694 -6.2750 25 6 5.6938 -1.4429 -5.1832 26 6 4.0179 -1.4597 0.0807 27 6 3.4309 -0.7090 1.2789 28 8 2.0065 -0.6741 1.1665 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6445 -1.7374 -1.2710 33 1 1.7138 -0.1849 -2.1399 34 1 4.0145 -2.5210 -2.2010 35 1 5.4521 -0.0619 -2.9592 36 1 6.0954 -1.3108 -1.8662 37 1 6.7373 -3.4897 -2.7109 38 1 7.5035 -4.7983 -4.6493 39 1 7.8351 -2.9988 -8.8513 40 1 6.8850 -4.4551 -9.2315 41 1 6.0790 -3.0164 -8.5615 42 1 8.6105 -5.5616 -7.8039 43 1 8.4484 -5.3720 -6.0416 44 1 8.8849 -8.9987 -6.5105 45 1 5.9572 -1.7965 -7.2743 46 1 5.1855 -0.5013 -5.3292 47 1 3.6617 -2.4898 0.0862 48 1 5.1062 -1.4492 0.1419 49 1 3.7103 -1.2200 2.2004 50 1 3.8194 0.3092 1.2958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271282519.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:19 Heat of formation + Delta-G solvation = -25.137376 kcal Electronic energy + Delta-G solvation = -26283.735728 eV Core-core repulsion = 22696.133153 eV Total energy + Delta-G solvation = -3587.602575 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.90054 -38.99192 -36.72307 -35.34285 -33.08022 -32.79356 -31.88064 -30.44805 -29.28974 -27.85384 -27.70414 -25.66084 -24.13692 -23.55945 -22.30382 -21.90033 -21.42405 -20.61026 -19.55784 -16.78571 -16.60685 -16.50862 -16.22989 -15.65569 -15.24993 -15.03129 -14.79774 -14.53012 -14.30511 -14.04934 -13.73434 -13.37670 -13.33803 -12.97872 -12.87822 -12.79671 -12.56530 -12.32515 -12.15135 -11.96819 -11.78839 -11.42679 -11.40750 -11.39878 -11.26641 -11.15352 -10.96067 -10.78970 -10.70300 -10.46167 -10.28318 -9.89176 -9.85100 -9.71042 -8.85398 -8.52555 -8.38287 -8.26600 -6.47875 -6.03183 -4.18979 2.10306 2.21050 3.24250 3.32505 3.37790 3.49874 4.03904 4.15263 4.40093 4.48977 4.55185 4.63359 4.67557 4.86387 4.91606 5.07517 5.14224 5.19959 5.20792 5.26476 5.32505 5.39761 5.43802 5.56568 5.59849 5.62052 5.65543 5.73989 5.77531 5.82138 5.88832 5.91593 6.00564 6.05387 6.07204 6.27706 6.38609 6.42504 6.63774 6.90300 6.98088 6.99599 7.07809 7.19522 7.23478 7.31832 7.41798 7.59502 7.79811 8.14027 8.25487 8.47667 8.90591 9.48046 10.93993 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.014789 B = 0.002505 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.786410 B =11174.189336 C =12057.400471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.086 3.914 3 H 0.056 0.944 4 C -0.137 4.137 5 C 0.086 3.914 6 H 0.075 0.925 7 N -0.679 5.679 8 C 0.116 3.884 9 C -0.174 4.174 10 C -0.067 4.067 11 C -0.187 4.187 12 C 0.242 3.758 13 N -0.615 5.615 14 C 0.098 3.902 15 C 0.248 3.752 16 C -0.530 4.530 17 H 0.060 0.940 18 C 0.061 3.939 19 N -0.895 5.895 20 Si 0.896 3.104 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.282 1.282 24 C -0.222 4.222 25 C -0.051 4.051 26 C -0.188 4.188 27 C 0.067 3.933 28 O -0.382 6.382 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.345 0.655 35 H 0.069 0.931 36 H 0.029 0.971 37 H 0.107 0.893 38 H 0.131 0.869 39 H 0.035 0.965 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.030 0.970 43 H 0.036 0.964 44 H 0.263 0.737 45 H 0.113 0.887 46 H 0.108 0.892 47 H 0.074 0.926 48 H 0.072 0.928 49 H 0.092 0.908 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.455 17.294 11.244 22.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.027 3.973 3 H 0.074 0.926 4 C -0.175 4.175 5 C -0.025 4.025 6 H 0.093 0.907 7 N -0.309 5.309 8 C -0.012 4.012 9 C -0.177 4.177 10 C -0.087 4.087 11 C -0.210 4.210 12 C 0.135 3.865 13 N -0.321 5.321 14 C -0.046 4.046 15 C 0.129 3.871 16 C -0.569 4.569 17 H 0.078 0.922 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.723 3.277 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.208 1.208 24 C -0.246 4.246 25 C -0.070 4.070 26 C -0.227 4.227 27 C -0.010 4.010 28 O -0.301 6.301 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.163 0.837 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.125 0.875 38 H 0.149 0.851 39 H 0.054 0.946 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.048 0.952 43 H 0.053 0.947 44 H 0.073 0.927 45 H 0.131 0.869 46 H 0.126 0.874 47 H 0.093 0.907 48 H 0.091 0.909 49 H 0.110 0.890 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.645 17.337 10.713 22.547 hybrid contribution 0.170 -1.358 0.443 1.438 sum -9.475 15.979 11.157 21.670 Atomic orbital electron populations 1.21756 0.93049 1.03039 1.02310 1.22130 0.95113 0.94912 0.85099 0.92642 1.22220 0.95044 1.02259 0.97967 1.21612 0.95142 0.97711 0.87994 0.90670 1.60665 1.22994 1.10130 1.37073 1.20669 0.87575 0.98463 0.94481 1.19160 1.06909 0.97836 0.93831 1.20647 0.96751 0.93619 0.97645 1.20842 1.07186 1.02213 0.90749 1.17965 0.90705 0.89848 0.88026 1.47108 1.60396 1.22367 1.02230 1.21472 0.99306 0.99153 0.84661 1.19291 0.92037 0.78133 0.97678 1.21617 0.94088 0.91323 1.49844 0.92197 1.24969 0.95354 0.98778 0.95034 1.69945 1.13960 1.20084 1.49453 0.86468 0.81617 0.81868 0.77699 1.19688 1.20945 1.20845 1.20573 1.08389 0.96947 0.98650 1.20480 0.96779 0.98203 0.91568 1.22977 1.01465 1.01380 0.96886 1.22471 0.81043 0.99338 0.98174 1.87932 1.20892 1.78081 1.43231 0.91740 0.92012 0.90997 0.90908 0.90246 0.83651 0.91264 0.95313 0.87531 0.85129 0.94617 0.91454 0.92649 0.95196 0.94652 0.92707 0.86903 0.87351 0.90703 0.90914 0.89006 0.93334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.56 37.16 0.36 -0.71 16 2 C 0.09 0.74 3.26 -26.68 -0.09 0.65 16 3 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 4 C -0.14 -1.27 5.03 -26.59 -0.13 -1.40 16 5 C 0.09 0.82 2.55 -67.53 -0.17 0.65 16 6 H 0.08 0.70 7.80 -51.93 -0.41 0.30 16 7 N -0.68 -7.88 6.25 -107.80 -0.67 -8.55 16 8 C 0.12 1.41 5.61 -4.97 -0.03 1.38 16 9 C -0.17 -2.65 5.40 -104.59 -0.56 -3.22 16 10 C -0.07 -1.13 9.69 -39.61 -0.38 -1.52 16 11 C -0.19 -3.77 9.21 -39.38 -0.36 -4.13 16 12 C 0.24 4.90 6.55 -83.78 -0.55 4.35 16 13 N -0.62 -13.20 2.99 -181.01 -0.54 -13.74 16 14 C 0.10 1.73 10.19 59.85 0.61 2.34 16 15 C 0.25 6.22 4.91 -5.19 -0.03 6.20 16 16 C -0.53 -14.45 9.39 -34.44 -0.32 -14.78 16 17 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 19 N -0.90 -25.62 13.29 55.43 0.74 -24.88 16 20 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C -0.22 -3.89 9.21 -39.38 -0.36 -4.25 16 25 C -0.05 -0.80 9.69 -39.61 -0.38 -1.18 16 26 C -0.19 -1.67 5.39 -26.59 -0.14 -1.81 16 27 C 0.07 0.56 6.84 37.21 0.25 0.82 16 28 O -0.38 -3.93 10.41 -35.23 -0.37 -4.29 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.34 4.22 8.43 -39.29 -0.33 3.89 16 35 H 0.07 0.79 8.00 -51.93 -0.42 0.38 16 36 H 0.03 0.33 7.48 -51.93 -0.39 -0.06 16 37 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 38 H 0.13 2.90 6.14 -52.49 -0.32 2.58 16 39 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 41 H 0.05 0.87 6.20 -51.93 -0.32 0.54 16 42 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 43 H 0.04 0.94 6.20 -51.93 -0.32 0.61 16 44 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.11 1.79 6.14 -52.48 -0.32 1.46 16 46 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 47 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 48 H 0.07 0.62 7.58 -51.93 -0.39 0.23 16 49 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 395.44 15.07 5.96 5.96 Total: -1.00 -29.10 395.44 -10.98 -40.07 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -8.68 Total: 4.18 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -2.40 Total: -15.03 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: -0.48 Total: -47.18 kcal Atomic # 8 Polarization: -3.93 SS G_CDS: -0.37 Total: -4.29 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.10 -10.98 -40.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271282519.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.938 kcal (2) G-P(sol) polarization free energy of solvation -29.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds