Wall clock time and date at job start Tue Mar 31 2020 13:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47903 * 2 1 4 4 C 1.53093 * 109.48240 * 239.97519 * 2 1 3 5 5 C 1.53178 * 109.16255 * 182.39519 * 4 2 1 6 6 H 1.08992 * 109.54753 * 297.02597 * 5 4 2 7 7 N 1.46895 * 109.54419 * 176.84713 * 5 4 2 8 8 C 1.46903 * 111.00055 * 155.00336 * 7 5 4 9 9 C 1.50705 * 109.46979 * 180.02562 * 8 7 5 10 10 C 1.38285 * 119.92481 * 269.72420 * 9 8 7 11 11 C 1.38102 * 120.07735 * 179.72449 * 10 9 8 12 12 C 1.38914 * 119.91928 * 0.54927 * 11 10 9 13 13 N 1.39679 * 120.07443 * 179.74580 * 12 11 10 14 14 C 1.46498 * 120.00108 * 179.97438 * 13 12 11 15 15 C 1.46508 * 119.99528 * 359.97438 * 13 12 11 16 16 C 1.50699 * 109.46816 * 90.00222 * 15 13 12 17 17 H 1.08003 * 120.00282 * 359.97438 * 16 15 13 18 18 C 1.37872 * 120.00057 * 179.97438 * 16 15 13 19 19 N 1.31520 * 119.99927 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00081 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47071 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47041 * 120.00839 * 20 18 16 23 23 H 1.48503 * 109.47046 * 240.00201 * 20 18 16 24 24 C 1.38908 * 119.85334 * 359.72779 * 12 11 10 25 25 C 1.38105 * 119.92370 * 359.97438 * 24 12 11 26 26 C 1.53178 * 109.03511 * 56.98447 * 5 4 2 27 27 C 1.53096 * 109.16278 * 303.01594 * 26 5 4 28 28 O 1.42904 * 109.47799 * 120.02263 * 2 1 3 29 29 H 1.09002 * 109.46856 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47239 * 300.00199 * 1 2 3 31 31 H 1.08997 * 109.46830 * 60.00367 * 1 2 3 32 32 H 1.09000 * 109.52228 * 302.30500 * 4 2 1 33 33 H 1.08997 * 109.52191 * 62.42994 * 4 2 1 34 34 H 1.00906 * 111.00160 * 278.95988 * 7 5 4 35 35 H 1.08996 * 109.47039 * 299.99559 * 8 7 5 36 36 H 1.08994 * 109.47158 * 60.00149 * 8 7 5 37 37 H 1.08003 * 119.95991 * 359.97438 * 10 9 8 38 38 H 1.07997 * 120.04170 * 180.27187 * 11 10 9 39 39 H 1.08997 * 109.46807 * 90.00147 * 14 13 12 40 40 H 1.08998 * 109.47015 * 209.99482 * 14 13 12 41 41 H 1.08990 * 109.47172 * 329.99858 * 14 13 12 42 42 H 1.08997 * 109.46652 * 209.99862 * 15 13 12 43 43 H 1.08992 * 109.47266 * 329.99875 * 15 13 12 44 44 H 0.97003 * 119.99853 * 179.97438 * 19 18 16 45 45 H 1.08004 * 120.04068 * 180.02562 * 24 12 11 46 46 H 1.08002 * 119.95960 * 180.02562 * 25 24 12 47 47 H 1.08999 * 109.52488 * 62.92180 * 26 5 4 48 48 H 1.09004 * 109.52654 * 183.11392 * 26 5 4 49 49 H 1.09003 * 109.48254 * 177.58780 * 27 26 5 50 50 H 1.08992 * 109.48305 * 297.61902 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2496 5 6 3.5712 -0.7705 -1.2123 6 1 3.9689 0.2439 -1.2426 7 7 4.0673 -1.5275 -2.3693 8 6 5.4370 -1.1240 -2.7144 9 6 5.9106 -1.9197 -3.9034 10 6 6.5656 -3.1224 -3.7120 11 6 6.9959 -3.8570 -4.7994 12 6 6.7801 -3.3807 -6.0864 13 7 7.2186 -4.1184 -7.1884 14 6 6.9897 -3.6149 -8.5450 15 6 7.9076 -5.3957 -6.9876 16 6 6.8965 -6.5129 -6.9604 17 1 5.8458 -6.2934 -7.0803 18 6 7.3127 -7.8152 -6.7825 19 7 8.5921 -8.0825 -6.6360 20 14 6.0593 -9.1999 -6.7481 21 1 4.6969 -8.6390 -6.9334 22 1 6.3521 -10.1598 -7.8427 23 1 6.1328 -9.9017 -5.4415 24 6 6.1269 -2.1694 -6.2750 25 6 5.6938 -1.4429 -5.1832 26 6 4.0179 -1.4597 0.0807 27 6 3.4309 -0.7090 1.2789 28 8 2.0065 -0.6741 1.1665 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6445 -1.7374 -1.2710 33 1 1.7138 -0.1849 -2.1399 34 1 4.0145 -2.5210 -2.2010 35 1 5.4521 -0.0619 -2.9592 36 1 6.0954 -1.3108 -1.8662 37 1 6.7373 -3.4897 -2.7109 38 1 7.5035 -4.7983 -4.6493 39 1 7.8351 -2.9988 -8.8513 40 1 6.8850 -4.4551 -9.2315 41 1 6.0790 -3.0164 -8.5615 42 1 8.6105 -5.5616 -7.8039 43 1 8.4484 -5.3720 -6.0416 44 1 8.8849 -8.9987 -6.5105 45 1 5.9572 -1.7965 -7.2743 46 1 5.1855 -0.5013 -5.3292 47 1 3.6617 -2.4898 0.0862 48 1 5.1062 -1.4492 0.1419 49 1 3.7103 -1.2200 2.2004 50 1 3.8194 0.3092 1.2958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271282519.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:18 Heat of formation + Delta-G solvation = -41.382504 kcal Electronic energy + Delta-G solvation = -26284.440169 eV Core-core repulsion = 22696.133153 eV Total energy + Delta-G solvation = -3588.307017 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.70580 -40.30165 -37.89653 -36.58959 -34.78815 -33.72493 -32.92502 -31.88470 -30.48117 -29.59465 -28.49807 -27.02952 -25.63043 -24.38871 -23.68249 -23.01578 -22.55163 -21.40957 -20.92178 -18.64750 -18.15600 -17.31050 -17.12273 -16.88077 -16.42949 -16.29956 -15.91411 -15.64238 -15.39410 -15.24439 -15.18283 -14.64745 -14.32617 -14.24407 -14.20103 -14.06482 -13.47248 -13.30336 -13.21142 -13.15828 -13.03520 -12.99929 -12.73634 -12.66126 -12.55785 -12.23507 -12.13724 -12.11185 -11.99947 -11.77505 -11.72892 -11.41875 -11.18932 -10.65979 -10.57060 -10.34576 -9.66566 -9.25958 -8.37287 -7.80519 -6.38579 0.71143 0.84209 1.34994 1.36752 1.49122 2.33385 2.63201 2.86127 2.99915 3.04942 3.42682 3.77891 3.87756 4.00539 4.05397 4.15516 4.18705 4.24468 4.27503 4.39071 4.42866 4.48512 4.50041 4.58682 4.64801 4.71347 4.76491 4.78212 4.82588 4.86926 4.90218 4.93405 5.00814 5.02605 5.07899 5.13004 5.19246 5.19852 5.27681 5.33436 5.36177 5.58858 5.67264 5.69797 5.92501 6.06243 6.14418 6.24144 6.33641 6.43836 6.49673 6.82171 6.93555 7.33420 8.82157 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.014789 B = 0.002505 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.786410 B =11174.189336 C =12057.400471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.084 3.916 3 H 0.068 0.932 4 C -0.132 4.132 5 C 0.088 3.912 6 H 0.086 0.914 7 N -0.685 5.685 8 C 0.121 3.879 9 C -0.160 4.160 10 C -0.068 4.068 11 C -0.216 4.216 12 C 0.211 3.789 13 N -0.632 5.632 14 C 0.098 3.902 15 C 0.266 3.734 16 C -0.539 4.539 17 H 0.048 0.952 18 C 0.012 3.988 19 N -0.927 5.927 20 Si 0.962 3.038 21 H -0.271 1.271 22 H -0.274 1.274 23 H -0.277 1.277 24 C -0.218 4.218 25 C -0.049 4.049 26 C -0.183 4.183 27 C 0.065 3.935 28 O -0.402 6.402 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.339 0.661 35 H 0.086 0.914 36 H 0.038 0.962 37 H 0.122 0.878 38 H 0.094 0.906 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.078 0.922 42 H 0.009 0.991 43 H 0.011 0.989 44 H 0.267 0.733 45 H 0.132 0.868 46 H 0.140 0.860 47 H 0.061 0.939 48 H 0.078 0.922 49 H 0.100 0.900 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.178 19.476 11.997 25.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.026 3.974 3 H 0.085 0.915 4 C -0.170 4.170 5 C -0.022 4.022 6 H 0.104 0.896 7 N -0.315 5.315 8 C -0.007 4.007 9 C -0.162 4.162 10 C -0.087 4.087 11 C -0.239 4.239 12 C 0.107 3.893 13 N -0.340 5.340 14 C -0.045 4.045 15 C 0.145 3.855 16 C -0.578 4.578 17 H 0.066 0.934 18 C -0.187 4.187 19 N -0.567 5.567 20 Si 0.786 3.214 21 H -0.195 1.195 22 H -0.199 1.199 23 H -0.203 1.203 24 C -0.241 4.241 25 C -0.068 4.068 26 C -0.222 4.222 27 C -0.012 4.012 28 O -0.322 6.322 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.157 0.843 35 H 0.104 0.896 36 H 0.057 0.943 37 H 0.140 0.860 38 H 0.112 0.888 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.027 0.973 43 H 0.029 0.971 44 H 0.076 0.924 45 H 0.150 0.850 46 H 0.158 0.842 47 H 0.080 0.920 48 H 0.097 0.903 49 H 0.118 0.882 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.384 19.559 11.475 25.374 hybrid contribution 0.678 -1.921 0.302 2.059 sum -10.706 17.639 11.777 23.758 Atomic orbital electron populations 1.21777 0.92359 1.02719 1.03225 1.22236 0.95756 0.95172 0.84248 0.91455 1.22171 0.94835 1.01498 0.98521 1.21641 0.95220 0.97856 0.87457 0.89633 1.60648 1.22497 1.09993 1.38358 1.20653 0.88033 0.98638 0.93342 1.19527 1.04669 0.96802 0.95226 1.20824 0.96426 0.94069 0.97399 1.20752 1.08967 1.01849 0.92335 1.18244 0.92369 0.91182 0.87539 1.46971 1.61414 1.21617 1.04029 1.21598 1.01097 0.99145 0.82661 1.18774 0.91396 0.79919 0.95455 1.21789 0.93786 0.92437 1.49771 0.93388 1.25781 0.97193 1.01180 0.94569 1.70046 1.15650 1.20805 1.50157 0.85452 0.79072 0.78816 0.78017 1.19548 1.19928 1.20256 1.20814 1.07236 0.95681 1.00340 1.20878 0.95893 0.98969 0.91031 1.22911 1.01743 1.00636 0.96914 1.22582 0.80283 1.00153 0.98223 1.87917 1.21920 1.78472 1.43897 0.92677 0.91646 0.89555 0.92461 0.89975 0.84291 0.89584 0.94335 0.86017 0.88757 0.92891 0.92550 0.90374 0.97274 0.97113 0.92386 0.85046 0.84182 0.92025 0.90343 0.88227 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.56 71.98 0.69 -1.18 16 2 C 0.08 1.27 3.26 30.63 0.10 1.37 16 3 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 4 C -0.13 -2.19 5.03 30.68 0.15 -2.03 16 5 C 0.09 1.46 2.55 45.04 0.12 1.58 16 6 H 0.09 1.28 7.80 -2.39 -0.02 1.26 16 7 N -0.69 -14.14 6.25 -494.98 -3.09 -17.23 16 8 C 0.12 2.54 5.61 85.56 0.48 3.02 16 9 C -0.16 -4.48 5.40 -19.84 -0.11 -4.59 16 10 C -0.07 -2.26 9.69 22.25 0.22 -2.05 16 11 C -0.22 -9.04 9.21 22.40 0.21 -8.84 16 12 C 0.21 8.69 6.55 38.21 0.25 8.94 16 13 N -0.63 -27.98 2.99 -726.58 -2.17 -30.16 16 14 C 0.10 3.44 10.19 127.77 1.30 4.74 16 15 C 0.27 14.12 4.91 85.63 0.42 14.54 16 16 C -0.54 -30.56 9.39 25.60 0.24 -30.32 16 17 H 0.05 2.78 7.81 -2.91 -0.02 2.75 16 18 C 0.01 0.67 5.46 84.65 0.46 1.13 16 19 N -0.93 -54.65 13.29 21.45 0.28 -54.37 16 20 Si 0.96 44.44 29.54 68.60 2.03 46.46 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 24 C -0.22 -7.24 9.21 22.40 0.21 -7.03 16 25 C -0.05 -1.38 9.69 22.25 0.22 -1.17 16 26 C -0.18 -2.88 5.39 30.69 0.17 -2.72 16 27 C 0.06 0.95 6.84 72.01 0.49 1.44 16 28 O -0.40 -7.58 10.41 -148.98 -1.55 -9.13 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.34 7.72 8.43 -89.69 -0.76 6.97 16 35 H 0.09 1.58 8.00 -2.39 -0.02 1.56 16 36 H 0.04 0.76 7.48 -2.39 -0.02 0.74 16 37 H 0.12 3.57 8.06 -2.91 -0.02 3.55 16 38 H 0.09 4.56 6.14 -2.91 -0.02 4.55 16 39 H 0.05 1.64 8.14 -2.39 -0.02 1.63 16 40 H 0.06 2.06 8.07 -2.39 -0.02 2.04 16 41 H 0.08 2.34 6.20 -2.39 -0.01 2.32 16 42 H 0.01 0.52 8.07 -2.39 -0.02 0.50 16 43 H 0.01 0.62 6.20 -2.39 -0.01 0.61 16 44 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 45 H 0.13 3.80 6.14 -2.91 -0.02 3.78 16 46 H 0.14 3.14 8.06 -2.91 -0.02 3.11 16 47 H 0.06 1.14 8.08 -2.39 -0.02 1.12 16 48 H 0.08 1.15 7.58 -2.39 -0.02 1.13 16 49 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -64.49 395.44 1.26 -63.24 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 0.15 Total: 24.35 kcal Atomic # 6 Polarization: -28.77 SS G_CDS: 5.61 Total: -23.16 kcal Atomic # 7 Polarization: -96.77 SS G_CDS: -4.98 Total: -101.75 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -1.55 Total: -9.13 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -64.49 1.26 -63.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271282519.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.855 kcal (2) G-P(sol) polarization free energy of solvation -64.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds