Wall clock time and date at job start Tue Mar 31 2020 12:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47434 * 2 1 4 4 N 1.46498 * 109.47306 * 179.97438 * 3 2 1 5 5 C 1.46506 * 120.00056 * 281.49114 * 4 3 2 6 6 C 1.53003 * 109.46753 * 269.99622 * 5 4 3 7 7 C 1.53002 * 109.46969 * 179.97438 * 6 5 4 8 8 N 1.46891 * 109.46933 * 180.02562 * 7 6 5 9 9 C 1.46909 * 111.00007 * 170.00191 * 8 7 6 10 10 C 1.46896 * 111.00611 * 293.95534 * 8 7 6 11 11 C 1.34775 * 119.99982 * 101.48435 * 4 3 2 12 12 O 1.21591 * 120.00038 * 186.65450 * 11 4 3 13 13 C 1.47643 * 120.00192 * 6.65728 * 11 4 3 14 14 C 1.40013 * 119.89348 * 148.23364 * 13 11 4 15 15 C 1.36318 * 120.10084 * 180.25443 * 14 13 11 16 16 C 1.40887 * 119.89562 * 359.52812 * 15 14 13 17 17 C 1.41104 * 120.10684 * 180.23067 * 16 15 14 18 18 H 1.08002 * 120.00234 * 209.71526 * 17 16 15 19 19 C 1.40223 * 120.00203 * 29.71335 * 17 16 15 20 20 N 1.30647 * 119.99956 * 10.78479 * 19 17 16 21 21 Si 1.86798 * 120.00349 * 190.79471 * 19 17 16 22 22 H 1.48502 * 109.47215 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47562 * 119.99953 * 21 19 17 24 24 H 1.48503 * 109.47060 * 239.99641 * 21 19 17 25 25 C 1.40892 * 119.79099 * 0.49487 * 16 15 14 26 26 C 1.36317 * 119.88844 * 359.73383 * 25 16 15 27 27 H 1.09004 * 109.46727 * 59.99841 * 1 2 3 28 28 H 1.08992 * 109.47417 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47271 * 300.00498 * 1 2 3 30 30 H 1.09000 * 109.47464 * 239.99916 * 2 1 3 31 31 H 1.09006 * 109.47343 * 119.99724 * 2 1 3 32 32 H 1.08995 * 109.47047 * 60.00012 * 3 2 1 33 33 H 1.09002 * 109.46801 * 299.99675 * 3 2 1 34 34 H 1.08995 * 109.47205 * 29.99730 * 5 4 3 35 35 H 1.08999 * 109.47022 * 150.00093 * 5 4 3 36 36 H 1.08995 * 109.47354 * 300.00018 * 6 5 4 37 37 H 1.08998 * 109.46828 * 59.99908 * 6 5 4 38 38 H 1.09000 * 109.47130 * 300.00721 * 7 6 5 39 39 H 1.09002 * 109.46634 * 59.99999 * 7 6 5 40 40 H 1.08997 * 109.46525 * 59.99699 * 9 8 7 41 41 H 1.08995 * 109.47343 * 180.02562 * 9 8 7 42 42 H 1.09001 * 109.46674 * 300.00227 * 9 8 7 43 43 H 1.09006 * 109.46874 * 59.99823 * 10 8 7 44 44 H 1.08998 * 109.47486 * 180.02562 * 10 8 7 45 45 H 1.09007 * 109.46810 * 300.00474 * 10 8 7 46 46 H 1.07997 * 119.95165 * 359.97438 * 14 13 11 47 47 H 1.08003 * 120.05267 * 179.72325 * 15 14 13 48 48 H 0.97005 * 120.00202 * 179.97438 * 20 19 17 49 49 H 1.07999 * 120.05210 * 179.70961 * 25 16 15 50 50 H 1.07999 * 119.94002 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2370 1.1899 1.2443 6 6 4.4918 2.5156 1.9643 7 6 5.2557 2.2518 3.2635 8 7 5.4997 3.5246 3.9550 9 6 6.0168 3.2963 5.3110 10 6 6.4109 4.3782 3.1810 11 6 4.1793 1.6747 -1.1430 12 8 5.3891 1.5558 -1.1702 13 6 3.4492 2.0735 -2.3626 14 6 4.0591 2.9210 -3.2954 15 6 3.3869 3.2961 -4.4204 16 6 2.0801 2.8215 -4.6487 17 6 1.3821 3.2030 -5.8141 18 1 0.3044 3.2730 -5.7995 19 6 2.0875 3.4913 -6.9912 20 7 3.3599 3.2075 -7.0763 21 14 1.2080 4.2815 -8.4374 22 1 -0.2191 4.4999 -8.0897 23 1 1.8461 5.5847 -8.7529 24 1 1.2978 3.3874 -9.6198 25 6 1.4704 1.9693 -3.7069 26 6 2.1488 1.6035 -2.5825 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.6477 0.5352 1.8862 35 1 5.1895 0.7123 1.0147 36 1 5.0811 3.1703 1.3224 37 1 3.5393 2.9933 2.1938 38 1 4.6660 1.5972 3.9052 39 1 6.2081 1.7739 3.0342 40 1 6.9548 2.7441 5.2538 41 1 6.1883 4.2549 5.8006 42 1 5.2905 2.7205 5.8846 43 1 5.9711 4.5888 2.2061 44 1 6.5748 5.3136 3.7159 45 1 7.3632 3.8650 3.0467 46 1 5.0620 3.2818 -3.1211 47 1 3.8565 3.9534 -5.1372 48 1 3.8478 3.4066 -7.8908 49 1 0.4671 1.6068 -3.8753 50 1 1.6821 0.9506 -1.8598 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276423189.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:16 Heat of formation + Delta-G solvation = -2.241077 kcal Electronic energy + Delta-G solvation = -26929.602047 eV Core-core repulsion = 23342.992330 eV Total energy + Delta-G solvation = -3586.609717 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.78912 -37.86027 -37.09891 -36.04330 -34.01939 -33.31089 -31.46111 -30.01899 -29.57591 -27.75334 -26.85517 -26.12485 -25.15077 -22.96220 -21.81764 -21.27727 -21.04195 -20.63675 -18.72780 -17.65927 -16.57689 -16.11615 -15.69485 -15.45357 -15.36161 -15.09023 -14.74161 -14.33329 -14.05422 -13.89384 -13.60860 -13.32920 -12.88773 -12.64820 -12.56991 -12.44607 -12.25229 -12.03700 -11.95082 -11.86687 -11.74731 -11.62687 -11.54732 -11.36954 -11.22414 -11.18931 -11.12382 -10.87194 -10.69378 -10.48113 -10.35896 -9.88461 -9.43543 -9.36318 -8.88910 -8.53502 -8.23229 -7.64177 -7.44322 -6.90783 -4.56922 2.29947 2.93375 2.98649 3.00794 3.03980 3.43876 3.76572 3.81591 3.88091 4.55618 4.83096 4.97444 5.01672 5.05738 5.10870 5.20971 5.25859 5.37157 5.40519 5.46747 5.47215 5.52746 5.59254 5.62063 5.65238 5.69771 5.82464 5.85284 5.87608 5.93878 6.09435 6.14266 6.20779 6.23683 6.27887 6.34174 6.45937 6.82334 6.84544 6.86827 6.88356 7.04228 7.07126 7.14891 7.48205 7.61548 7.79524 7.90000 8.06256 8.15233 8.47453 8.68725 8.78779 9.00611 10.01329 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.016377 B = 0.002886 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.269275 B = 9700.978799 C =10785.937937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.146 4.146 3 C 0.078 3.922 4 N -0.617 5.617 5 C 0.120 3.880 6 C -0.131 4.131 7 C 0.058 3.942 8 N -0.548 5.548 9 C 0.025 3.975 10 C 0.021 3.979 11 C 0.574 3.426 12 O -0.567 6.567 13 C -0.272 4.272 14 C -0.043 4.043 15 C -0.172 4.172 16 C 0.127 3.873 17 C -0.449 4.449 18 H 0.083 0.917 19 C 0.072 3.928 20 N -0.782 5.782 21 Si 0.914 3.086 22 H -0.259 1.259 23 H -0.270 1.270 24 H -0.273 1.273 25 C -0.231 4.231 26 C -0.083 4.083 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.125 0.875 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.035 0.965 40 H 0.023 0.977 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.025 0.975 46 H 0.095 0.905 47 H 0.121 0.879 48 H 0.284 0.716 49 H 0.097 0.903 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.272 -1.437 15.929 16.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.184 4.184 3 C -0.045 4.045 4 N -0.349 5.349 5 C -0.004 4.004 6 C -0.170 4.170 7 C -0.070 4.070 8 N -0.272 5.272 9 C -0.124 4.124 10 C -0.128 4.128 11 C 0.369 3.631 12 O -0.447 6.447 13 C -0.276 4.276 14 C -0.062 4.062 15 C -0.191 4.191 16 C 0.124 3.876 17 C -0.478 4.478 18 H 0.101 0.899 19 C -0.148 4.148 20 N -0.406 5.406 21 Si 0.738 3.262 22 H -0.182 1.182 23 H -0.195 1.195 24 H -0.198 1.198 25 C -0.250 4.250 26 C -0.101 4.101 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.142 0.858 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.053 0.947 40 H 0.042 0.958 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.044 0.956 46 H 0.113 0.887 47 H 0.139 0.861 48 H 0.096 0.904 49 H 0.115 0.885 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.868 -1.247 15.789 15.862 hybrid contribution 0.507 -0.183 -0.725 0.904 sum -0.361 -1.429 15.064 15.136 Atomic orbital electron populations 1.21720 0.95148 1.01762 1.02245 1.21986 0.96178 0.97821 1.02431 1.22506 0.80072 0.96800 1.05119 1.47756 1.06330 1.72822 1.07993 1.21212 0.97736 0.96114 0.85369 1.21958 1.01094 0.98680 0.95230 1.22070 0.99102 0.90400 0.95434 1.61982 1.46501 1.15888 1.02807 1.22374 0.98275 1.01423 0.90307 1.22449 0.94232 0.96928 0.99155 1.18746 0.86625 0.74738 0.82983 1.90642 1.14916 1.53595 1.85565 1.18916 0.96886 1.13742 0.98089 1.20427 0.97232 0.95469 0.93104 1.21038 0.96982 1.04139 0.96975 1.17802 0.91819 0.86822 0.91130 1.19799 0.95131 1.38715 0.94144 0.89916 1.26058 0.94799 0.93228 1.00730 1.69731 1.08975 1.33577 1.28286 0.86158 0.80691 0.79370 0.79972 1.18234 1.19543 1.19775 1.20757 1.00777 1.05399 0.98084 1.21214 0.93305 0.98773 0.96829 0.91958 0.92674 0.92723 0.91118 0.92086 0.91897 0.85769 0.91381 0.90341 0.91378 0.91120 0.90872 0.94671 0.95795 0.91483 0.91456 0.90736 0.91585 0.95609 0.88670 0.86105 0.90442 0.88466 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.86 37.15 0.37 -1.21 16 2 C -0.15 -1.80 5.25 -26.73 -0.14 -1.94 16 3 C 0.08 1.10 4.87 -4.04 -0.02 1.08 16 4 N -0.62 -10.27 2.49 -174.87 -0.44 -10.71 16 5 C 0.12 1.66 5.44 -4.04 -0.02 1.64 16 6 C -0.13 -1.70 5.46 -26.73 -0.15 -1.84 16 7 C 0.06 0.64 4.96 -3.83 -0.02 0.62 16 8 N -0.55 -6.03 5.02 -251.26 -1.26 -7.29 16 9 C 0.02 0.21 9.57 60.07 0.57 0.79 16 10 C 0.02 0.22 9.32 60.06 0.56 0.78 16 11 C 0.57 12.23 7.43 -12.42 -0.09 12.14 16 12 O -0.57 -13.67 16.28 5.29 0.09 -13.59 16 13 C -0.27 -6.19 5.58 -104.73 -0.58 -6.77 16 14 C -0.04 -1.05 9.53 -39.61 -0.38 -1.43 16 15 C -0.17 -4.40 8.59 -39.27 -0.34 -4.74 16 16 C 0.13 3.23 5.54 -106.80 -0.59 2.64 16 17 C -0.45 -11.22 9.05 -37.75 -0.34 -11.56 16 18 H 0.08 1.96 7.87 -52.49 -0.41 1.54 16 19 C 0.07 1.71 5.24 -17.31 -0.09 1.62 16 20 N -0.78 -19.51 10.89 55.56 0.61 -18.91 16 21 Si 0.91 17.71 29.57 -169.99 -5.03 12.69 16 22 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 23 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 24 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 25 C -0.23 -5.26 9.73 -39.27 -0.38 -5.64 16 26 C -0.08 -1.74 7.38 -39.61 -0.29 -2.03 16 27 H 0.06 0.69 7.94 -51.93 -0.41 0.28 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 1.00 7.13 -51.93 -0.37 0.63 16 31 H 0.06 0.69 7.67 -51.93 -0.40 0.29 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.13 2.01 3.86 -52.83 -0.20 1.80 16 34 H 0.07 0.77 7.58 -51.93 -0.39 0.38 16 35 H 0.08 1.22 7.34 -51.93 -0.38 0.84 16 36 H 0.07 1.05 6.55 -51.93 -0.34 0.71 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.70 8.06 -51.93 -0.42 0.28 16 39 H 0.04 0.40 8.12 -51.93 -0.42 -0.02 16 40 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 42 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 43 H 0.07 0.89 6.47 -51.93 -0.34 0.55 16 44 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 45 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.10 2.28 7.94 -52.49 -0.42 1.87 16 47 H 0.12 3.18 6.28 -52.48 -0.33 2.85 16 48 H 0.28 6.42 8.29 -40.82 -0.34 6.09 16 49 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 50 H 0.12 2.16 2.66 -52.49 -0.14 2.02 16 LS Contribution 393.41 15.07 5.93 5.93 Total: -1.00 -28.72 393.41 -10.37 -39.10 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -8.33 Total: 8.63 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -1.94 Total: -15.85 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: -1.09 Total: -36.90 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.09 Total: -13.59 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.69 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -28.72 -10.37 -39.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276423189.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.855 kcal (2) G-P(sol) polarization free energy of solvation -28.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds