Wall clock time and date at job start Tue Mar 31 2020 12:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47434 * 2 1 4 4 N 1.46498 * 109.47306 * 179.97438 * 3 2 1 5 5 C 1.46506 * 120.00056 * 281.49114 * 4 3 2 6 6 C 1.53003 * 109.46753 * 269.99622 * 5 4 3 7 7 C 1.53002 * 109.46969 * 179.97438 * 6 5 4 8 8 N 1.46891 * 109.46933 * 180.02562 * 7 6 5 9 9 C 1.46909 * 111.00007 * 170.00191 * 8 7 6 10 10 C 1.46896 * 111.00611 * 293.95534 * 8 7 6 11 11 C 1.34775 * 119.99982 * 101.48435 * 4 3 2 12 12 O 1.21591 * 120.00038 * 186.65450 * 11 4 3 13 13 C 1.47643 * 120.00192 * 6.65728 * 11 4 3 14 14 C 1.40013 * 119.89348 * 148.23364 * 13 11 4 15 15 C 1.36318 * 120.10084 * 180.25443 * 14 13 11 16 16 C 1.40887 * 119.89562 * 359.52812 * 15 14 13 17 17 C 1.41104 * 120.10684 * 180.23067 * 16 15 14 18 18 H 1.08002 * 120.00234 * 209.71526 * 17 16 15 19 19 C 1.40223 * 120.00203 * 29.71335 * 17 16 15 20 20 N 1.30647 * 119.99956 * 10.78479 * 19 17 16 21 21 Si 1.86798 * 120.00349 * 190.79471 * 19 17 16 22 22 H 1.48502 * 109.47215 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47562 * 119.99953 * 21 19 17 24 24 H 1.48503 * 109.47060 * 239.99641 * 21 19 17 25 25 C 1.40892 * 119.79099 * 0.49487 * 16 15 14 26 26 C 1.36317 * 119.88844 * 359.73383 * 25 16 15 27 27 H 1.09004 * 109.46727 * 59.99841 * 1 2 3 28 28 H 1.08992 * 109.47417 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47271 * 300.00498 * 1 2 3 30 30 H 1.09000 * 109.47464 * 239.99916 * 2 1 3 31 31 H 1.09006 * 109.47343 * 119.99724 * 2 1 3 32 32 H 1.08995 * 109.47047 * 60.00012 * 3 2 1 33 33 H 1.09002 * 109.46801 * 299.99675 * 3 2 1 34 34 H 1.08995 * 109.47205 * 29.99730 * 5 4 3 35 35 H 1.08999 * 109.47022 * 150.00093 * 5 4 3 36 36 H 1.08995 * 109.47354 * 300.00018 * 6 5 4 37 37 H 1.08998 * 109.46828 * 59.99908 * 6 5 4 38 38 H 1.09000 * 109.47130 * 300.00721 * 7 6 5 39 39 H 1.09002 * 109.46634 * 59.99999 * 7 6 5 40 40 H 1.08997 * 109.46525 * 59.99699 * 9 8 7 41 41 H 1.08995 * 109.47343 * 180.02562 * 9 8 7 42 42 H 1.09001 * 109.46674 * 300.00227 * 9 8 7 43 43 H 1.09006 * 109.46874 * 59.99823 * 10 8 7 44 44 H 1.08998 * 109.47486 * 180.02562 * 10 8 7 45 45 H 1.09007 * 109.46810 * 300.00474 * 10 8 7 46 46 H 1.07997 * 119.95165 * 359.97438 * 14 13 11 47 47 H 1.08003 * 120.05267 * 179.72325 * 15 14 13 48 48 H 0.97005 * 120.00202 * 179.97438 * 20 19 17 49 49 H 1.07999 * 120.05210 * 179.70961 * 25 16 15 50 50 H 1.07999 * 119.94002 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2370 1.1899 1.2443 6 6 4.4918 2.5156 1.9643 7 6 5.2557 2.2518 3.2635 8 7 5.4997 3.5246 3.9550 9 6 6.0168 3.2963 5.3110 10 6 6.4109 4.3782 3.1810 11 6 4.1793 1.6747 -1.1430 12 8 5.3891 1.5558 -1.1702 13 6 3.4492 2.0735 -2.3626 14 6 4.0591 2.9210 -3.2954 15 6 3.3869 3.2961 -4.4204 16 6 2.0801 2.8215 -4.6487 17 6 1.3821 3.2030 -5.8141 18 1 0.3044 3.2730 -5.7995 19 6 2.0875 3.4913 -6.9912 20 7 3.3599 3.2075 -7.0763 21 14 1.2080 4.2815 -8.4374 22 1 -0.2191 4.4999 -8.0897 23 1 1.8461 5.5847 -8.7529 24 1 1.2978 3.3874 -9.6198 25 6 1.4704 1.9693 -3.7069 26 6 2.1488 1.6035 -2.5825 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.6477 0.5352 1.8862 35 1 5.1895 0.7123 1.0147 36 1 5.0811 3.1703 1.3224 37 1 3.5393 2.9933 2.1938 38 1 4.6660 1.5972 3.9052 39 1 6.2081 1.7739 3.0342 40 1 6.9548 2.7441 5.2538 41 1 6.1883 4.2549 5.8006 42 1 5.2905 2.7205 5.8846 43 1 5.9711 4.5888 2.2061 44 1 6.5748 5.3136 3.7159 45 1 7.3632 3.8650 3.0467 46 1 5.0620 3.2818 -3.1211 47 1 3.8565 3.9534 -5.1372 48 1 3.8478 3.4066 -7.8908 49 1 0.4671 1.6068 -3.8753 50 1 1.6821 0.9506 -1.8598 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276423189.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:15 Heat of formation + Delta-G solvation = -17.523091 kcal Electronic energy + Delta-G solvation = -26930.264724 eV Core-core repulsion = 23342.992330 eV Total energy + Delta-G solvation = -3587.272395 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.34713 -39.10324 -38.55415 -37.46493 -35.70161 -34.52155 -32.69210 -31.78337 -31.33193 -28.53989 -28.20848 -27.44748 -26.48352 -24.15887 -23.27241 -22.77798 -22.40421 -21.75639 -20.24356 -19.46223 -18.11625 -17.47349 -17.21692 -16.59467 -16.47351 -16.32728 -16.05416 -15.53310 -15.40294 -15.15117 -14.98766 -14.81633 -14.43114 -14.02577 -13.88885 -13.71442 -13.41104 -13.31481 -13.28276 -13.03528 -12.97386 -12.81660 -12.75811 -12.63021 -12.47664 -12.39216 -12.32156 -12.18929 -12.06414 -11.66538 -11.60067 -11.51705 -11.20566 -11.17092 -10.58647 -9.67647 -9.46656 -9.36908 -9.28954 -8.70650 -6.47524 0.49491 1.11670 1.38870 1.41804 1.55325 2.00144 2.16602 2.18950 2.75496 3.01207 3.63534 3.78275 3.97111 4.04383 4.08306 4.14208 4.21995 4.35761 4.37772 4.41402 4.42228 4.47361 4.51666 4.57946 4.63452 4.66385 4.73282 4.77233 4.82599 4.95138 4.96847 5.00449 5.02779 5.04876 5.11378 5.18132 5.21703 5.26425 5.28413 5.29541 5.51762 5.61385 5.72636 5.78497 5.98277 6.00259 6.02554 6.08822 6.22317 6.52431 6.58800 6.80718 6.91052 7.36335 8.24319 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.016377 B = 0.002886 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.269275 B = 9700.978799 C =10785.937937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C 0.073 3.927 4 N -0.606 5.606 5 C 0.118 3.882 6 C -0.120 4.120 7 C 0.064 3.936 8 N -0.560 5.560 9 C 0.024 3.976 10 C 0.022 3.978 11 C 0.570 3.430 12 O -0.605 6.605 13 C -0.282 4.282 14 C -0.057 4.057 15 C -0.193 4.193 16 C 0.101 3.899 17 C -0.477 4.477 18 H 0.091 0.909 19 C 0.029 3.971 20 N -0.819 5.819 21 Si 0.990 3.010 22 H -0.250 1.250 23 H -0.266 1.266 24 H -0.266 1.266 25 C -0.240 4.240 26 C -0.067 4.067 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.060 0.940 36 H 0.035 0.965 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.028 0.972 40 H 0.025 0.975 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.054 0.946 44 H 0.080 0.920 45 H 0.022 0.978 46 H 0.086 0.914 47 H 0.103 0.897 48 H 0.291 0.709 49 H 0.118 0.882 50 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.507 -2.302 18.085 18.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C -0.049 4.049 4 N -0.336 5.336 5 C -0.004 4.004 6 C -0.159 4.159 7 C -0.065 4.065 8 N -0.284 5.284 9 C -0.124 4.124 10 C -0.127 4.127 11 C 0.364 3.636 12 O -0.488 6.488 13 C -0.287 4.287 14 C -0.076 4.076 15 C -0.212 4.212 16 C 0.098 3.902 17 C -0.505 4.505 18 H 0.109 0.891 19 C -0.187 4.187 20 N -0.444 5.444 21 Si 0.810 3.190 22 H -0.173 1.173 23 H -0.191 1.191 24 H -0.191 1.191 25 C -0.259 4.259 26 C -0.085 4.085 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.126 0.874 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.115 0.885 39 H 0.046 0.954 40 H 0.044 0.956 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.073 0.927 44 H 0.098 0.902 45 H 0.041 0.959 46 H 0.104 0.896 47 H 0.121 0.879 48 H 0.102 0.898 49 H 0.136 0.864 50 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.133 -2.123 17.999 18.392 hybrid contribution 1.230 0.058 -1.234 1.743 sum -1.903 -2.065 16.765 16.998 Atomic orbital electron populations 1.21716 0.93364 1.02797 1.02744 1.21941 0.97609 0.95910 1.02433 1.22659 0.78206 0.98493 1.05519 1.47770 1.07579 1.70769 1.07484 1.21429 0.97381 0.97168 0.84460 1.21825 1.00994 0.97436 0.95650 1.22017 0.98828 0.90862 0.94746 1.61995 1.46846 1.15762 1.03795 1.22442 0.98678 1.02281 0.88955 1.22416 0.93921 0.97731 0.98584 1.18586 0.86114 0.74974 0.83959 1.90617 1.16388 1.55525 1.86319 1.19213 0.97776 1.13105 0.98576 1.20490 0.97057 0.96439 0.93659 1.20944 0.97858 1.05160 0.97270 1.18159 0.91940 0.87738 0.92388 1.20105 0.95681 1.40016 0.94733 0.89090 1.26997 0.95346 0.93019 1.03364 1.69807 1.10606 1.34450 1.29491 0.85024 0.79610 0.78237 0.76086 1.17335 1.19123 1.19120 1.21034 1.01789 1.05011 0.98059 1.21577 0.92255 0.97984 0.96650 0.92819 0.91428 0.90935 0.93138 0.90106 0.88873 0.87915 0.87400 0.92164 0.94649 0.90679 0.88498 0.95373 0.95607 0.90574 0.90128 0.92667 0.90150 0.95931 0.89572 0.87931 0.89778 0.86434 0.82203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.86 71.98 0.71 -1.82 16 2 C -0.14 -2.98 5.25 30.59 0.16 -2.82 16 3 C 0.07 1.86 4.87 86.38 0.42 2.29 16 4 N -0.61 -19.43 2.49 -825.43 -2.06 -21.48 16 5 C 0.12 3.07 5.44 86.38 0.47 3.54 16 6 C -0.12 -2.98 5.46 30.60 0.17 -2.81 16 7 C 0.06 1.28 4.96 86.31 0.43 1.71 16 8 N -0.56 -11.38 5.02 -948.84 -4.76 -16.14 16 9 C 0.02 0.36 9.57 127.69 1.22 1.58 16 10 C 0.02 0.46 9.32 127.69 1.19 1.65 16 11 C 0.57 24.68 7.43 86.73 0.64 25.33 16 12 O -0.60 -30.25 16.28 -4.00 -0.07 -30.32 16 13 C -0.28 -13.19 5.58 -19.94 -0.11 -13.30 16 14 C -0.06 -2.95 9.53 22.25 0.21 -2.74 16 15 C -0.19 -10.45 8.59 22.47 0.19 -10.25 16 16 C 0.10 5.28 5.54 -21.28 -0.12 5.16 16 17 C -0.48 -24.32 9.05 23.46 0.21 -24.11 16 18 H 0.09 4.32 7.87 -2.91 -0.02 4.30 16 19 C 0.03 1.41 5.24 85.35 0.45 1.86 16 20 N -0.82 -42.37 10.89 21.87 0.24 -42.14 16 21 Si 0.99 36.40 29.57 68.60 2.03 38.43 16 22 H -0.25 -8.76 7.11 99.48 0.71 -8.06 16 23 H -0.27 -9.54 7.11 99.48 0.71 -8.83 16 24 H -0.27 -9.46 7.11 99.48 0.71 -8.75 16 25 C -0.24 -10.96 9.73 22.47 0.22 -10.75 16 26 C -0.07 -2.79 7.38 22.25 0.16 -2.63 16 27 H 0.05 1.02 7.94 -2.38 -0.02 1.00 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.05 1.30 7.13 -2.39 -0.02 1.28 16 31 H 0.08 1.44 7.67 -2.38 -0.02 1.42 16 32 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.10 3.13 3.86 -3.23 -0.01 3.12 16 34 H 0.11 1.99 7.58 -2.39 -0.02 1.97 16 35 H 0.06 1.83 7.34 -2.39 -0.02 1.81 16 36 H 0.03 1.11 6.55 -2.39 -0.02 1.10 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.10 1.51 8.06 -2.39 -0.02 1.49 16 39 H 0.03 0.61 8.12 -2.39 -0.02 0.59 16 40 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.08 0.99 8.12 -2.39 -0.02 0.97 16 42 H 0.08 0.98 8.12 -2.39 -0.02 0.96 16 43 H 0.05 1.37 6.47 -2.38 -0.02 1.35 16 44 H 0.08 1.43 8.12 -2.39 -0.02 1.41 16 45 H 0.02 0.48 8.14 -2.38 -0.02 0.46 16 46 H 0.09 4.47 7.94 -2.91 -0.02 4.45 16 47 H 0.10 5.81 6.28 -2.91 -0.02 5.79 16 48 H 0.29 13.60 8.29 -92.70 -0.77 12.83 16 49 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 50 H 0.16 5.38 2.66 -2.91 -0.01 5.37 16 Total: -1.00 -65.87 393.41 2.92 -62.94 By element: Atomic # 1 Polarization: 35.90 SS G_CDS: 0.91 Total: 36.81 kcal Atomic # 6 Polarization: -34.74 SS G_CDS: 6.63 Total: -28.11 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: -6.58 Total: -79.76 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.07 Total: -30.32 kcal Atomic # 14 Polarization: 36.40 SS G_CDS: 2.03 Total: 38.43 kcal Total: -65.87 2.92 -62.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276423189.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.421 kcal (2) G-P(sol) polarization free energy of solvation -65.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds