Wall clock time and date at job start Tue Mar 31 2020 12:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47170 * 2 1 4 4 N 1.46901 * 109.47086 * 119.99659 * 2 1 3 5 5 C 1.46899 * 111.00015 * 56.05073 * 4 2 1 6 6 C 1.46905 * 110.99828 * 180.02562 * 4 2 1 7 7 C 1.50702 * 109.47045 * 174.77609 * 6 4 2 8 8 C 1.38256 * 120.00010 * 102.50722 * 7 6 4 9 9 C 1.38215 * 119.99534 * 179.74243 * 8 7 6 10 10 C 1.38257 * 120.00445 * 0.55955 * 9 8 7 11 11 C 1.38214 * 119.99695 * 359.69795 * 10 9 8 12 12 C 1.38220 * 119.99777 * 282.78804 * 7 6 4 13 13 C 1.50699 * 119.99836 * 359.97438 * 12 7 6 14 14 N 1.46493 * 109.47156 * 79.84988 * 13 12 7 15 15 C 1.34783 * 120.00093 * 179.97438 * 14 13 12 16 16 O 1.21283 * 119.99606 * 359.97438 * 15 14 13 17 17 C 1.50693 * 119.99985 * 179.97438 * 15 14 13 18 18 C 1.53004 * 109.46996 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.47113 * 179.97438 * 18 17 15 20 20 H 1.08000 * 119.99781 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99924 * 180.02562 * 19 18 17 22 22 N 1.31509 * 119.99755 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 119.99734 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47055 * 90.00254 * 23 21 19 25 25 H 1.48509 * 109.46860 * 210.00227 * 23 21 19 26 26 H 1.48498 * 109.47351 * 329.99860 * 23 21 19 27 27 H 1.08998 * 109.47399 * 299.99697 * 1 2 3 28 28 H 1.09003 * 109.47502 * 60.00135 * 1 2 3 29 29 H 1.09002 * 109.47311 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47268 * 239.99784 * 2 1 3 31 31 H 1.09004 * 109.47377 * 59.99897 * 3 2 1 32 32 H 1.08994 * 109.47582 * 179.97438 * 3 2 1 33 33 H 1.09011 * 109.47100 * 300.00094 * 3 2 1 34 34 H 1.09002 * 109.47506 * 177.90606 * 5 4 2 35 35 H 1.09000 * 109.47145 * 297.90809 * 5 4 2 36 36 H 1.09001 * 109.47429 * 57.90733 * 5 4 2 37 37 H 1.08998 * 109.47015 * 54.77465 * 6 4 2 38 38 H 1.08999 * 109.47052 * 294.77439 * 6 4 2 39 39 H 1.07994 * 120.00050 * 0.02562 * 8 7 6 40 40 H 1.08000 * 119.99830 * 180.27918 * 9 8 7 41 41 H 1.07998 * 119.99798 * 179.72474 * 10 9 8 42 42 H 1.08000 * 119.99880 * 180.02562 * 11 10 9 43 43 H 1.09005 * 109.46354 * 199.84457 * 13 12 7 44 44 H 1.09000 * 109.46985 * 319.84235 * 13 12 7 45 45 H 0.97006 * 120.00397 * 359.97438 * 14 13 12 46 46 H 1.08992 * 109.47454 * 300.00156 * 17 15 14 47 47 H 1.09000 * 109.47341 * 60.00287 * 17 15 14 48 48 H 1.08992 * 109.47432 * 300.00519 * 18 17 15 49 49 H 1.09000 * 109.46904 * 60.00572 * 18 17 15 50 50 H 0.97004 * 119.99735 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 1.4730 -2.0535 1.2817 6 6 3.4881 -0.7115 1.2337 7 6 3.9525 -1.3133 2.5350 8 6 4.4098 -2.6176 2.5691 9 6 4.8407 -3.1677 3.7616 10 6 4.8035 -2.4176 4.9224 11 6 4.3413 -1.1155 4.8892 12 6 3.9157 -0.5632 3.6953 13 6 3.4118 0.8566 3.6591 14 7 1.9469 0.8548 3.6535 15 6 1.2716 2.0209 3.6232 16 8 1.8769 3.0717 3.6011 17 6 -0.2353 2.0190 3.6169 18 6 -0.7469 3.4606 3.5815 19 6 -2.2539 3.4587 3.5746 20 1 -2.7928 2.5230 3.5940 21 6 -2.9446 4.6516 3.5435 22 7 -4.2597 4.6500 3.5380 23 14 -2.0124 6.2700 3.5093 24 1 -1.7594 6.6658 2.1006 25 1 -2.8190 7.3202 4.1814 26 1 -0.7176 6.1105 4.2188 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 3.1299 1.4425 0.0005 33 1 1.6765 1.9563 -0.8901 34 1 1.8805 -2.5564 2.1587 35 1 0.3871 -2.0046 1.3627 36 1 1.7457 -2.6094 0.3846 37 1 3.8667 0.3071 1.1489 38 1 3.8632 -1.3089 0.4028 39 1 4.4347 -3.2050 1.6632 40 1 5.2022 -4.1851 3.7875 41 1 5.1361 -2.8491 5.8550 42 1 4.3127 -0.5294 5.7959 43 1 3.7711 1.3921 4.5379 44 1 3.7781 1.3492 2.7584 45 1 1.4627 0.0144 3.6716 46 1 -0.5943 1.4840 2.7379 47 1 -0.6018 1.5259 4.5172 48 1 -0.3879 3.9953 4.4608 49 1 -0.3805 3.9541 2.6814 50 1 -4.7456 5.4893 3.5165 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292652024.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:49 Heat of formation + Delta-G solvation = -18.184709 kcal Electronic energy + Delta-G solvation = -28049.502831 eV Core-core repulsion = 24462.201746 eV Total energy + Delta-G solvation = -3587.301085 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.31704 -38.76362 -37.98431 -34.67497 -33.36652 -33.09582 -31.58617 -30.91889 -30.80125 -28.41691 -26.97600 -25.91525 -25.09539 -24.20474 -22.23649 -21.24921 -20.68048 -19.90355 -19.46082 -17.24086 -16.66770 -16.51882 -15.90268 -15.80572 -15.48936 -15.05669 -14.97780 -14.82421 -14.34639 -14.02178 -13.69982 -13.27104 -13.16737 -13.01066 -12.92565 -12.64953 -12.53816 -12.43119 -12.25660 -12.10344 -11.95714 -11.84485 -11.51994 -11.33029 -11.22349 -10.97907 -10.92908 -10.82993 -10.67416 -10.05859 -9.93318 -9.71392 -9.31375 -9.10955 -9.03429 -8.76354 -8.58467 -8.44665 -8.35126 -5.97537 -3.95257 1.05069 1.12635 3.36605 3.36885 3.41825 3.48260 3.60298 3.78623 4.09327 4.48327 4.56173 4.58274 4.68118 4.80324 4.88845 4.96297 5.02280 5.16147 5.19390 5.31646 5.32385 5.38425 5.45935 5.49225 5.53359 5.60026 5.73863 5.76932 5.80481 5.83393 5.86949 5.90876 5.95506 5.99759 6.17018 6.20570 6.23857 6.26246 6.35857 6.45107 6.50541 6.73976 6.83297 6.91707 6.95153 7.01338 7.46676 7.54057 7.85769 8.10325 8.57953 8.90340 9.07139 9.66278 11.15438 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.016053 B = 0.003640 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.751606 B = 7691.359408 C = 8513.146913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.083 3.917 3 C -0.149 4.149 4 N -0.522 5.522 5 C 0.018 3.982 6 C 0.088 3.912 7 C -0.063 4.063 8 C -0.117 4.117 9 C -0.118 4.118 10 C -0.122 4.122 11 C -0.103 4.103 12 C -0.081 4.081 13 C 0.167 3.833 14 N -0.714 5.714 15 C 0.513 3.487 16 O -0.552 6.552 17 C -0.120 4.120 18 C 0.003 3.997 19 C -0.521 4.521 20 H 0.072 0.928 21 C 0.068 3.932 22 N -0.905 5.905 23 Si 0.876 3.124 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.261 1.261 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.034 0.966 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.021 0.979 37 H 0.090 0.910 38 H 0.037 0.963 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.402 0.598 46 H 0.084 0.916 47 H 0.080 0.920 48 H 0.021 0.979 49 H 0.017 0.983 50 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.005 -18.514 -4.088 26.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 C -0.206 4.206 4 N -0.247 5.247 5 C -0.130 4.130 6 C -0.039 4.039 7 C -0.064 4.064 8 C -0.136 4.136 9 C -0.136 4.136 10 C -0.140 4.140 11 C -0.121 4.121 12 C -0.082 4.082 13 C 0.043 3.957 14 N -0.367 5.367 15 C 0.301 3.699 16 O -0.429 6.429 17 C -0.160 4.160 18 C -0.034 4.034 19 C -0.559 4.559 20 H 0.090 0.910 21 C -0.133 4.133 22 N -0.545 5.545 23 Si 0.703 3.297 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.185 1.185 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.039 0.961 37 H 0.108 0.892 38 H 0.055 0.945 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.142 0.858 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.237 0.763 46 H 0.102 0.898 47 H 0.099 0.901 48 H 0.040 0.960 49 H 0.036 0.964 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 19.107 -17.342 -3.719 26.071 hybrid contribution 0.493 -0.157 -0.751 0.912 sum 19.601 -17.500 -4.470 26.653 Atomic orbital electron populations 1.21949 0.93638 1.01838 1.03324 1.21596 0.96099 0.94924 0.89842 1.21926 1.00313 0.95228 1.03178 1.62072 1.06231 1.16752 1.39618 1.22494 1.01255 0.88928 1.00348 1.21127 0.88624 1.01193 0.92984 1.19655 0.98218 0.93697 0.94793 1.21031 0.99837 0.94622 0.98070 1.21116 0.99909 0.99779 0.92772 1.21138 1.00150 0.94446 0.98288 1.21141 0.98194 0.95373 0.97428 1.19811 0.99449 0.96114 0.92827 1.19951 0.82195 0.91496 1.02013 1.45937 1.05209 1.09259 1.76271 1.21354 0.91279 0.82801 0.74434 1.90639 1.70866 1.31594 1.49809 1.21626 0.88555 1.02773 1.03025 1.19340 0.96176 0.90481 0.97453 1.21137 0.89418 0.94471 1.50848 0.91017 1.24965 0.94672 0.99158 0.94467 1.69916 1.06250 1.26891 1.51401 0.86814 0.80659 0.83472 0.78720 1.20320 1.21569 1.18496 0.90783 0.92124 0.92729 0.94792 0.90866 0.93156 0.92234 0.91337 0.90679 0.96093 0.89160 0.94452 0.86401 0.86223 0.86082 0.85783 0.91734 0.91320 0.76333 0.89771 0.90136 0.96030 0.96414 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.83 37.15 0.33 -1.38 16 2 C 0.08 0.89 2.68 -67.72 -0.18 0.71 16 3 C -0.15 -1.81 8.97 37.16 0.33 -1.48 16 4 N -0.52 -5.25 3.42 -236.33 -0.81 -6.06 16 5 C 0.02 0.16 8.80 60.06 0.53 0.69 16 6 C 0.09 0.84 4.23 -4.97 -0.02 0.82 16 7 C -0.06 -0.59 4.31 -104.62 -0.45 -1.04 16 8 C -0.12 -0.97 8.73 -39.58 -0.35 -1.31 16 9 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 10 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 11 C -0.10 -0.96 9.67 -39.58 -0.38 -1.35 16 12 C -0.08 -0.83 5.25 -104.62 -0.55 -1.38 16 13 C 0.17 2.09 5.20 -5.20 -0.03 2.06 16 14 N -0.71 -9.89 4.68 -61.48 -0.29 -10.18 16 15 C 0.51 9.40 7.23 -10.99 -0.08 9.32 16 16 O -0.55 -12.25 15.98 5.55 0.09 -12.16 16 17 C -0.12 -2.37 5.64 -27.88 -0.16 -2.53 16 18 C 0.00 0.09 3.33 -27.88 -0.09 -0.01 16 19 C -0.52 -14.98 9.66 -34.44 -0.33 -15.32 16 20 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 21 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 22 N -0.91 -28.24 13.96 55.43 0.77 -27.47 16 23 Si 0.88 22.84 27.47 -169.99 -4.67 18.17 16 24 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 26 H -0.26 -6.79 6.54 56.52 0.37 -6.42 16 27 H 0.07 1.00 7.01 -51.93 -0.36 0.64 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.55 6.39 -51.93 -0.33 0.22 16 30 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 1.12 7.54 -51.93 -0.39 0.72 16 32 H 0.05 0.56 6.29 -51.93 -0.33 0.24 16 33 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 34 H 0.07 0.61 6.28 -51.93 -0.33 0.29 16 35 H 0.07 0.69 6.36 -51.93 -0.33 0.36 16 36 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.09 0.94 4.57 -51.93 -0.24 0.71 16 38 H 0.04 0.33 7.98 -51.93 -0.41 -0.09 16 39 H 0.12 0.82 8.02 -52.49 -0.42 0.39 16 40 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.12 1.07 8.04 -52.49 -0.42 0.64 16 43 H 0.06 0.85 8.00 -51.93 -0.42 0.43 16 44 H 0.07 0.91 6.61 -51.93 -0.34 0.57 16 45 H 0.40 5.05 8.12 -40.82 -0.33 4.72 16 46 H 0.08 1.56 7.01 -51.93 -0.36 1.19 16 47 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 48 H 0.02 0.57 7.16 -51.93 -0.37 0.20 16 49 H 0.02 0.46 7.52 -51.93 -0.39 0.07 16 50 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 390.36 15.07 5.88 5.88 Total: -1.00 -32.96 390.36 -9.67 -42.62 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -8.33 Total: 2.15 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -2.32 Total: -12.97 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: -0.32 Total: -43.70 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.09 Total: -12.16 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.67 Total: 18.17 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.96 -9.67 -42.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292652024.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.440 kcal (2) G-P(sol) polarization free energy of solvation -32.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds