Wall clock time and date at job start Tue Mar 31 2020 12:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47170 * 2 1 4 4 N 1.46901 * 109.47086 * 119.99659 * 2 1 3 5 5 C 1.46899 * 111.00015 * 56.05073 * 4 2 1 6 6 C 1.46905 * 110.99828 * 180.02562 * 4 2 1 7 7 C 1.50702 * 109.47045 * 174.77609 * 6 4 2 8 8 C 1.38256 * 120.00010 * 102.50722 * 7 6 4 9 9 C 1.38215 * 119.99534 * 179.74243 * 8 7 6 10 10 C 1.38257 * 120.00445 * 0.55955 * 9 8 7 11 11 C 1.38214 * 119.99695 * 359.69795 * 10 9 8 12 12 C 1.38220 * 119.99777 * 282.78804 * 7 6 4 13 13 C 1.50699 * 119.99836 * 359.97438 * 12 7 6 14 14 N 1.46493 * 109.47156 * 79.84988 * 13 12 7 15 15 C 1.34783 * 120.00093 * 179.97438 * 14 13 12 16 16 O 1.21283 * 119.99606 * 359.97438 * 15 14 13 17 17 C 1.50693 * 119.99985 * 179.97438 * 15 14 13 18 18 C 1.53004 * 109.46996 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.47113 * 179.97438 * 18 17 15 20 20 H 1.08000 * 119.99781 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99924 * 180.02562 * 19 18 17 22 22 N 1.31509 * 119.99755 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 119.99734 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47055 * 90.00254 * 23 21 19 25 25 H 1.48509 * 109.46860 * 210.00227 * 23 21 19 26 26 H 1.48498 * 109.47351 * 329.99860 * 23 21 19 27 27 H 1.08998 * 109.47399 * 299.99697 * 1 2 3 28 28 H 1.09003 * 109.47502 * 60.00135 * 1 2 3 29 29 H 1.09002 * 109.47311 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47268 * 239.99784 * 2 1 3 31 31 H 1.09004 * 109.47377 * 59.99897 * 3 2 1 32 32 H 1.08994 * 109.47582 * 179.97438 * 3 2 1 33 33 H 1.09011 * 109.47100 * 300.00094 * 3 2 1 34 34 H 1.09002 * 109.47506 * 177.90606 * 5 4 2 35 35 H 1.09000 * 109.47145 * 297.90809 * 5 4 2 36 36 H 1.09001 * 109.47429 * 57.90733 * 5 4 2 37 37 H 1.08998 * 109.47015 * 54.77465 * 6 4 2 38 38 H 1.08999 * 109.47052 * 294.77439 * 6 4 2 39 39 H 1.07994 * 120.00050 * 0.02562 * 8 7 6 40 40 H 1.08000 * 119.99830 * 180.27918 * 9 8 7 41 41 H 1.07998 * 119.99798 * 179.72474 * 10 9 8 42 42 H 1.08000 * 119.99880 * 180.02562 * 11 10 9 43 43 H 1.09005 * 109.46354 * 199.84457 * 13 12 7 44 44 H 1.09000 * 109.46985 * 319.84235 * 13 12 7 45 45 H 0.97006 * 120.00397 * 359.97438 * 14 13 12 46 46 H 1.08992 * 109.47454 * 300.00156 * 17 15 14 47 47 H 1.09000 * 109.47341 * 60.00287 * 17 15 14 48 48 H 1.08992 * 109.47432 * 300.00519 * 18 17 15 49 49 H 1.09000 * 109.46904 * 60.00572 * 18 17 15 50 50 H 0.97004 * 119.99735 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 1.4730 -2.0535 1.2817 6 6 3.4881 -0.7115 1.2337 7 6 3.9525 -1.3133 2.5350 8 6 4.4098 -2.6176 2.5691 9 6 4.8407 -3.1677 3.7616 10 6 4.8035 -2.4176 4.9224 11 6 4.3413 -1.1155 4.8892 12 6 3.9157 -0.5632 3.6953 13 6 3.4118 0.8566 3.6591 14 7 1.9469 0.8548 3.6535 15 6 1.2716 2.0209 3.6232 16 8 1.8769 3.0717 3.6011 17 6 -0.2353 2.0190 3.6169 18 6 -0.7469 3.4606 3.5815 19 6 -2.2539 3.4587 3.5746 20 1 -2.7928 2.5230 3.5940 21 6 -2.9446 4.6516 3.5435 22 7 -4.2597 4.6500 3.5380 23 14 -2.0124 6.2700 3.5093 24 1 -1.7594 6.6658 2.1006 25 1 -2.8190 7.3202 4.1814 26 1 -0.7176 6.1105 4.2188 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 3.1299 1.4425 0.0005 33 1 1.6765 1.9563 -0.8901 34 1 1.8805 -2.5564 2.1587 35 1 0.3871 -2.0046 1.3627 36 1 1.7457 -2.6094 0.3846 37 1 3.8667 0.3071 1.1489 38 1 3.8632 -1.3089 0.4028 39 1 4.4347 -3.2050 1.6632 40 1 5.2022 -4.1851 3.7875 41 1 5.1361 -2.8491 5.8550 42 1 4.3127 -0.5294 5.7959 43 1 3.7711 1.3921 4.5379 44 1 3.7781 1.3492 2.7584 45 1 1.4627 0.0144 3.6716 46 1 -0.5943 1.4840 2.7379 47 1 -0.6018 1.5259 4.5172 48 1 -0.3879 3.9953 4.4608 49 1 -0.3805 3.9541 2.6814 50 1 -4.7456 5.4893 3.5165 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292652024.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:48 Heat of formation + Delta-G solvation = -38.045942 kcal Electronic energy + Delta-G solvation = -28050.364079 eV Core-core repulsion = 24462.201746 eV Total energy + Delta-G solvation = -3588.162332 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.18107 -40.12603 -38.76619 -35.90406 -35.42025 -33.92738 -33.31107 -32.17954 -31.55600 -29.24816 -28.50414 -26.86729 -26.41339 -24.99496 -23.18266 -22.81940 -21.56844 -21.02285 -20.71706 -19.17450 -17.77048 -17.39473 -17.20636 -16.76717 -16.54011 -16.26893 -16.17970 -15.91057 -15.79577 -15.14009 -14.79969 -14.57792 -14.50159 -14.37315 -13.90634 -13.79450 -13.46491 -13.45616 -13.38838 -13.26761 -13.10711 -12.91324 -12.85167 -12.72601 -12.33180 -12.06093 -12.02427 -11.91476 -11.83118 -11.70448 -11.64075 -11.51734 -11.35684 -10.75643 -10.72577 -9.85004 -9.72218 -9.61120 -9.14473 -8.29178 -6.31110 0.35290 0.47039 1.33653 1.35478 1.51316 1.87486 2.36760 2.46847 2.81659 3.06657 3.22131 3.70287 3.86397 3.94942 4.03624 4.07859 4.18173 4.20067 4.33411 4.39862 4.42168 4.45658 4.47886 4.54862 4.64760 4.70151 4.77226 4.79408 4.81471 4.82742 4.92186 4.98957 4.99823 5.05007 5.12621 5.15836 5.18745 5.33201 5.35869 5.47131 5.54655 5.56272 5.62964 5.63405 5.67038 5.74895 6.08651 6.19475 6.21919 6.27346 6.74858 6.79939 7.33899 7.49644 8.86600 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.016053 B = 0.003640 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.751606 B = 7691.359408 C = 8513.146913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.089 3.911 3 C -0.145 4.145 4 N -0.533 5.533 5 C 0.022 3.978 6 C 0.091 3.909 7 C -0.066 4.066 8 C -0.117 4.117 9 C -0.113 4.113 10 C -0.124 4.124 11 C -0.112 4.112 12 C -0.094 4.094 13 C 0.172 3.828 14 N -0.689 5.689 15 C 0.520 3.480 16 O -0.594 6.594 17 C -0.113 4.113 18 C 0.010 3.990 19 C -0.524 4.524 20 H 0.049 0.951 21 C 0.015 3.985 22 N -0.944 5.944 23 Si 0.936 3.064 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.263 1.263 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.038 0.962 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.031 0.969 37 H 0.076 0.924 38 H 0.050 0.950 39 H 0.135 0.865 40 H 0.145 0.855 41 H 0.141 0.859 42 H 0.126 0.874 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.411 0.589 46 H 0.096 0.904 47 H 0.092 0.908 48 H 0.007 0.993 49 H 0.007 0.993 50 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.919 -20.661 -4.346 29.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.019 4.019 3 C -0.202 4.202 4 N -0.258 5.258 5 C -0.126 4.126 6 C -0.036 4.036 7 C -0.067 4.067 8 C -0.135 4.135 9 C -0.131 4.131 10 C -0.142 4.142 11 C -0.130 4.130 12 C -0.095 4.095 13 C 0.049 3.951 14 N -0.340 5.340 15 C 0.308 3.692 16 O -0.475 6.475 17 C -0.153 4.153 18 C -0.028 4.028 19 C -0.562 4.562 20 H 0.067 0.933 21 C -0.183 4.183 22 N -0.584 5.584 23 Si 0.761 3.239 24 H -0.194 1.194 25 H -0.204 1.204 26 H -0.187 1.187 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.050 0.950 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.153 0.847 40 H 0.162 0.838 41 H 0.159 0.841 42 H 0.144 0.856 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.248 0.752 46 H 0.114 0.886 47 H 0.111 0.889 48 H 0.025 0.975 49 H 0.025 0.975 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 21.031 -19.545 -3.974 28.985 hybrid contribution -0.084 0.371 -0.664 0.765 sum 20.947 -19.174 -4.638 28.774 Atomic orbital electron populations 1.21913 0.94279 1.02338 1.01945 1.21493 0.95459 0.94123 0.90790 1.21871 1.00766 0.96074 1.01500 1.62022 1.06791 1.17616 1.39356 1.22466 1.00932 0.88234 1.00965 1.21072 0.88140 1.00703 0.93673 1.19659 0.98576 0.94295 0.94190 1.21234 0.99165 0.94036 0.99108 1.21454 0.98657 1.00798 0.92231 1.21406 0.99440 0.93820 0.99498 1.21258 0.98418 0.96200 0.97130 1.19602 1.01141 0.94857 0.93899 1.19938 0.80607 0.93396 1.01191 1.45688 1.06147 1.08186 1.73967 1.20930 0.90547 0.83329 0.74404 1.90622 1.71343 1.33253 1.52279 1.21437 0.90039 0.99581 1.04247 1.19164 0.93822 0.93705 0.96060 1.21417 0.91234 0.93623 1.49958 0.93301 1.25764 0.95448 1.02676 0.94370 1.70024 1.07676 1.28032 1.52712 0.85866 0.79243 0.79679 0.79150 1.19374 1.20361 1.18712 0.93382 0.92231 0.91273 0.93358 0.94259 0.92396 0.92089 0.91027 0.91074 0.95039 0.90535 0.93197 0.84698 0.83768 0.84090 0.85566 0.92460 0.92254 0.75241 0.88581 0.88942 0.97504 0.97496 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 8.83 71.98 0.64 -2.64 16 2 C 0.09 1.82 2.68 44.91 0.12 1.94 16 3 C -0.14 -3.52 8.97 71.98 0.65 -2.88 16 4 N -0.53 -9.96 3.42 -901.63 -3.08 -13.04 16 5 C 0.02 0.34 8.80 127.69 1.12 1.46 16 6 C 0.09 1.58 4.23 85.56 0.36 1.94 16 7 C -0.07 -1.11 4.31 -19.86 -0.09 -1.20 16 8 C -0.12 -1.55 8.73 22.27 0.19 -1.35 16 9 C -0.11 -1.34 10.05 22.27 0.22 -1.12 16 10 C -0.12 -1.64 10.05 22.27 0.22 -1.41 16 11 C -0.11 -1.88 9.67 22.27 0.22 -1.67 16 12 C -0.09 -1.81 5.25 -19.86 -0.10 -1.91 16 13 C 0.17 4.26 5.20 85.63 0.45 4.70 16 14 N -0.69 -18.91 4.68 -466.80 -2.19 -21.09 16 15 C 0.52 19.25 7.23 87.65 0.63 19.89 16 16 O -0.59 -26.92 15.98 -3.04 -0.05 -26.97 16 17 C -0.11 -4.53 5.64 29.85 0.17 -4.36 16 18 C 0.01 0.54 3.33 29.85 0.10 0.64 16 19 C -0.52 -30.81 9.66 25.60 0.25 -30.56 16 20 H 0.05 3.02 7.99 -2.91 -0.02 3.00 16 21 C 0.01 0.90 5.47 84.66 0.46 1.36 16 22 N -0.94 -59.72 13.96 21.45 0.30 -59.42 16 23 Si 0.94 47.64 27.47 68.60 1.88 49.53 16 24 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 25 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 26 H -0.26 -13.38 6.54 99.48 0.65 -12.73 16 27 H 0.05 1.31 7.01 -2.39 -0.02 1.30 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.07 1.31 6.39 -2.39 -0.02 1.29 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.04 1.22 7.54 -2.38 -0.02 1.21 16 32 H 0.06 1.29 6.29 -2.39 -0.02 1.27 16 33 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.07 1.08 6.28 -2.39 -0.01 1.07 16 35 H 0.07 1.17 6.36 -2.39 -0.02 1.15 16 36 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.08 1.55 4.57 -2.39 -0.01 1.54 16 38 H 0.05 0.75 7.98 -2.39 -0.02 0.73 16 39 H 0.14 1.33 8.02 -2.91 -0.02 1.30 16 40 H 0.14 1.01 8.06 -2.91 -0.02 0.98 16 41 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 42 H 0.13 2.00 8.04 -2.91 -0.02 1.98 16 43 H 0.06 1.51 8.00 -2.38 -0.02 1.50 16 44 H 0.06 1.60 6.61 -2.39 -0.02 1.59 16 45 H 0.41 9.95 8.12 -92.70 -0.75 9.20 16 46 H 0.10 3.60 7.01 -2.39 -0.02 3.58 16 47 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 48 H 0.01 0.36 7.16 -2.39 -0.02 0.34 16 49 H 0.01 0.35 7.52 -2.39 -0.02 0.34 16 50 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -71.83 390.36 2.60 -69.23 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 0.12 Total: 18.93 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: 5.61 Total: -17.17 kcal Atomic # 7 Polarization: -88.59 SS G_CDS: -4.97 Total: -93.56 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.05 Total: -26.97 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 1.88 Total: 49.53 kcal Total: -71.83 2.60 -69.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292652024.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.188 kcal (2) G-P(sol) polarization free energy of solvation -71.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds