Wall clock time and date at job start Tue Mar 31 2020 12:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47344 * 2 1 4 4 H 1.08996 * 109.47479 * 177.94989 * 3 2 1 5 5 C 1.50700 * 109.47325 * 57.94451 * 3 2 1 6 6 H 1.08000 * 120.00332 * 240.00535 * 5 3 2 7 7 C 1.37874 * 119.99475 * 59.99717 * 5 3 2 8 8 N 1.31513 * 120.00336 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99815 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47007 * 60.00559 * 9 7 5 11 11 H 1.48506 * 109.47260 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47419 * 300.00401 * 9 7 5 13 13 N 1.46909 * 109.47026 * 297.94694 * 3 2 1 14 14 C 1.46896 * 110.99985 * 273.74557 * 13 3 2 15 15 C 1.52994 * 109.47279 * 174.95823 * 14 13 3 16 16 H 1.09004 * 109.51001 * 59.90782 * 15 14 13 17 17 C 1.53100 * 109.51192 * 179.97438 * 15 14 13 18 18 N 1.47009 * 109.25952 * 176.78611 * 17 15 14 19 19 C 1.46902 * 110.99550 * 177.60728 * 18 17 15 20 20 C 1.50703 * 109.47048 * 169.99358 * 19 18 17 21 21 C 1.38231 * 120.00447 * 269.73019 * 20 19 18 22 22 C 1.38240 * 120.00156 * 179.78724 * 21 20 19 23 23 C 1.38233 * 119.99874 * 0.45900 * 22 21 20 24 24 C 1.38234 * 119.99915 * 359.76727 * 23 22 21 25 25 C 1.38237 * 120.00250 * 0.02823 * 24 23 22 26 26 C 1.47010 * 110.74993 * 301.37686 * 18 17 15 27 27 C 1.53106 * 109.25880 * 58.62274 * 26 18 17 28 28 O 1.43016 * 109.50544 * 299.78361 * 15 14 13 29 29 H 1.09003 * 109.47370 * 174.44628 * 1 2 3 30 30 H 1.09000 * 109.46611 * 294.43835 * 1 2 3 31 31 H 1.08996 * 109.47409 * 54.44149 * 1 2 3 32 32 H 1.09010 * 109.46420 * 239.99944 * 2 1 3 33 33 H 1.08992 * 109.47260 * 120.00432 * 2 1 3 34 34 H 0.97008 * 119.99998 * 179.97438 * 8 7 5 35 35 H 1.00896 * 110.99826 * 149.78681 * 13 3 2 36 36 H 1.09002 * 109.47125 * 54.95474 * 14 13 3 37 37 H 1.09001 * 109.46910 * 294.95699 * 14 13 3 38 38 H 1.09001 * 109.50613 * 56.84466 * 17 15 14 39 39 H 1.09006 * 109.53655 * 296.74007 * 17 15 14 40 40 H 1.08991 * 109.47254 * 289.99301 * 19 18 17 41 41 H 1.09004 * 109.47539 * 50.00001 * 19 18 17 42 42 H 1.08002 * 119.99564 * 359.97438 * 21 20 19 43 43 H 1.07998 * 119.99475 * 180.25076 * 22 21 20 44 44 H 1.07997 * 119.99669 * 179.79178 * 23 22 21 45 45 H 1.07997 * 119.99911 * 179.97438 * 24 23 22 46 46 H 1.08006 * 120.00167 * 179.97438 * 25 24 23 47 47 H 1.09003 * 109.50878 * 178.55103 * 26 18 17 48 48 H 1.08998 * 109.51293 * 298.68449 * 26 18 17 49 49 H 1.08991 * 109.51037 * 183.21444 * 27 26 18 50 50 H 1.08998 * 109.53721 * 63.10152 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1294 1.4427 0.0368 5 6 1.4966 2.1675 1.2042 6 1 0.8796 3.0442 1.0737 7 6 1.7871 1.7114 2.4725 8 7 2.5387 0.6440 2.6314 9 14 1.1141 2.6105 3.9652 10 1 -0.3701 2.6108 3.9153 11 1 1.5680 1.9253 5.2021 12 1 1.6096 4.0103 3.9651 13 7 1.5913 2.1205 -1.2236 14 6 2.5289 1.8855 -2.3297 15 6 1.9670 2.4991 -3.6136 16 1 1.8290 3.5714 -3.4746 17 6 2.9438 2.2552 -4.7670 18 7 2.3640 2.7787 -6.0124 19 6 3.2958 2.6153 -7.1362 20 6 2.5858 2.9309 -8.4275 21 6 1.9403 1.9270 -9.1248 22 6 1.2853 2.2174 -10.3070 23 6 1.2838 3.5101 -10.7967 24 6 1.9333 4.5132 -10.1018 25 6 2.5847 4.2236 -8.9175 26 6 1.0749 2.1326 -6.2987 27 6 0.1166 2.3777 -5.1300 28 8 0.7099 1.8913 -3.9230 29 1 -0.3634 -1.0229 -0.0995 30 1 -0.3632 0.4252 0.9356 31 1 -0.3634 0.5976 -0.8360 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.7434 0.3234 3.5238 35 1 1.4618 3.1081 -1.0629 36 1 2.6652 0.8130 -2.4689 37 1 3.4887 2.3465 -2.0965 38 1 3.1243 1.1853 -4.8711 39 1 3.8852 2.7649 -4.5614 40 1 4.1395 3.2937 -7.0103 41 1 3.6570 1.5871 -7.1623 42 1 1.9452 0.9162 -8.7443 43 1 0.7776 1.4337 -10.8496 44 1 0.7749 3.7363 -11.7220 45 1 1.9325 5.5231 -10.4847 46 1 3.0925 5.0073 -8.3748 47 1 0.6515 2.5533 -7.2108 48 1 1.2255 1.0608 -6.4272 49 1 -0.8211 1.8528 -5.3119 50 1 -0.0767 3.4462 -5.0351 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000311684527.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:34 Heat of formation + Delta-G solvation = -13.462070 kcal Electronic energy + Delta-G solvation = -26887.047452 eV Core-core repulsion = 23299.951156 eV Total energy + Delta-G solvation = -3587.096296 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.17467 -38.98725 -36.35341 -35.61627 -33.11161 -31.89428 -31.34161 -31.12080 -29.99559 -28.19560 -26.48692 -24.84831 -24.15563 -23.06291 -22.83001 -22.10420 -20.92592 -20.23985 -18.89128 -17.08255 -16.67516 -16.22208 -16.00552 -15.70185 -15.60173 -14.93237 -14.72730 -14.64581 -14.37738 -14.00493 -13.74284 -13.66541 -13.30084 -13.10773 -12.86622 -12.81191 -12.33093 -12.22264 -12.06671 -11.69455 -11.57670 -11.42701 -11.28532 -11.12470 -10.91762 -10.84743 -10.74431 -10.35782 -10.23742 -9.91641 -9.60982 -9.38475 -9.23451 -9.16350 -9.09457 -8.71318 -8.45147 -8.41232 -7.10810 -5.96685 -4.01596 1.02124 1.12041 3.34147 3.37652 3.38652 3.41731 3.86235 4.04905 4.39816 4.44724 4.55566 4.71549 4.81590 4.88757 4.94029 5.05478 5.11845 5.20573 5.24160 5.32776 5.34453 5.40784 5.43799 5.55428 5.63886 5.70261 5.71956 5.76200 5.80770 5.92044 6.00821 6.15909 6.20380 6.22533 6.33262 6.45790 6.63685 6.68974 6.80386 6.82681 6.84270 6.97228 7.36214 7.38351 7.55193 7.59824 7.83957 7.86367 7.93063 8.33832 8.47147 8.75202 9.08154 9.62742 11.09299 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.032512 B = 0.002274 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.016471 B =12308.923161 C =12450.352970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.099 4.099 3 C 0.217 3.783 4 H -0.002 1.002 5 C -0.511 4.511 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.890 5.890 9 Si 0.893 3.107 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.279 1.279 13 N -0.675 5.675 14 C 0.070 3.930 15 C 0.102 3.898 16 H 0.061 0.939 17 C 0.024 3.976 18 N -0.530 5.530 19 C 0.092 3.908 20 C -0.081 4.081 21 C -0.114 4.114 22 C -0.122 4.122 23 C -0.122 4.122 24 C -0.122 4.122 25 C -0.099 4.099 26 C 0.016 3.984 27 C 0.061 3.939 28 O -0.354 6.354 29 H 0.010 0.990 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.009 0.991 33 H 0.083 0.917 34 H 0.260 0.740 35 H 0.329 0.671 36 H 0.069 0.931 37 H 0.032 0.968 38 H 0.044 0.956 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.044 0.956 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.124 0.876 47 H 0.086 0.914 48 H 0.039 0.961 49 H 0.093 0.907 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.311 4.488 -25.433 25.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.138 4.138 3 C 0.109 3.891 4 H 0.016 0.984 5 C -0.549 4.549 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.529 5.529 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.305 5.305 14 C -0.061 4.061 15 C 0.044 3.956 16 H 0.079 0.921 17 C -0.105 4.105 18 N -0.254 5.254 19 C -0.035 4.035 20 C -0.081 4.081 21 C -0.132 4.132 22 C -0.140 4.140 23 C -0.140 4.140 24 C -0.140 4.140 25 C -0.118 4.118 26 C -0.112 4.112 27 C -0.017 4.017 28 O -0.271 6.271 29 H 0.029 0.971 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.027 0.973 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.146 0.854 36 H 0.088 0.912 37 H 0.050 0.950 38 H 0.062 0.938 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.062 0.938 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.142 0.858 47 H 0.104 0.896 48 H 0.058 0.942 49 H 0.111 0.889 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.189 4.201 -25.252 25.600 hybrid contribution 0.709 0.286 0.707 1.042 sum 0.521 4.487 -24.545 24.957 Atomic orbital electron populations 1.21427 0.97448 0.97061 1.01620 1.21391 0.95212 0.98147 0.99028 1.19112 0.93050 0.91743 0.85170 0.98449 1.21153 1.31517 1.11895 0.90365 0.92378 1.24883 0.95147 0.95037 0.98821 1.69886 1.37461 1.23144 1.22367 0.86643 0.79469 0.79691 0.82074 1.20217 1.21423 1.20439 1.60545 1.47129 1.15932 1.06939 1.21856 0.93456 1.00644 0.90172 1.22187 0.83351 0.97142 0.92953 0.92137 1.22846 0.98911 0.98716 0.90018 1.62355 1.03567 1.57263 1.02248 1.21120 0.94700 1.00375 0.87349 1.19777 0.98696 0.93836 0.95838 1.21115 0.97779 0.98992 0.95326 1.21124 0.99703 0.96833 0.96307 1.21163 0.99621 0.93232 0.99975 1.21173 0.98037 0.99292 0.95466 1.21063 0.99031 0.95961 0.95702 1.22920 0.91009 0.97263 1.00020 1.22600 0.95360 0.99534 0.84156 1.88220 1.34756 1.64103 1.40065 0.97099 0.93176 0.93004 0.97277 0.89902 0.92989 0.85429 0.91228 0.94971 0.93767 0.89756 0.89661 0.93812 0.86334 0.86105 0.86211 0.86067 0.85818 0.89619 0.94228 0.88902 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.80 9.46 37.16 0.35 -2.45 16 2 C -0.10 -2.48 5.57 -26.73 -0.15 -2.63 16 3 C 0.22 5.46 2.30 -68.86 -0.16 5.30 16 4 H 0.00 -0.06 7.84 -51.93 -0.41 -0.46 16 5 C -0.51 -13.83 7.33 -34.44 -0.25 -14.08 16 6 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -25.38 11.34 55.43 0.63 -24.75 16 9 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.67 -14.50 5.38 -107.95 -0.58 -15.08 16 14 C 0.07 1.26 5.15 -3.83 -0.02 1.24 16 15 C 0.10 1.58 3.05 -26.68 -0.08 1.50 16 16 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 17 C 0.02 0.30 4.91 -3.71 -0.02 0.28 16 18 N -0.53 -6.15 4.87 -235.74 -1.15 -7.30 16 19 C 0.09 0.89 5.43 -4.97 -0.03 0.86 16 20 C -0.08 -0.75 4.13 -104.62 -0.43 -1.19 16 21 C -0.11 -0.99 7.88 -39.58 -0.31 -1.30 16 22 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 23 C -0.12 -0.92 10.05 -39.58 -0.40 -1.31 16 24 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 25 C -0.10 -0.87 9.70 -39.58 -0.38 -1.25 16 26 C 0.02 0.18 4.66 -3.71 -0.02 0.17 16 27 C 0.06 0.80 7.01 37.21 0.26 1.06 16 28 O -0.35 -5.94 10.34 -35.23 -0.36 -6.30 16 29 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.05 1.26 7.37 -51.93 -0.38 0.88 16 31 H 0.05 1.21 7.50 -51.93 -0.39 0.82 16 32 H 0.01 0.21 7.43 -51.92 -0.39 -0.18 16 33 H 0.08 2.28 6.13 -51.93 -0.32 1.96 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 35 H 0.33 6.94 8.25 -39.29 -0.32 6.62 16 36 H 0.07 1.33 7.40 -51.93 -0.38 0.95 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.09 0.76 8.08 -51.93 -0.42 0.34 16 41 H 0.04 0.42 8.02 -51.93 -0.42 0.00 16 42 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 44 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 45 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 46 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 47 H 0.09 0.93 5.93 -51.93 -0.31 0.62 16 48 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 50 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 390.12 15.07 5.88 5.88 Total: -1.00 -29.49 390.12 -11.90 -41.39 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -8.77 Total: 4.72 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -2.53 Total: -14.89 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: -1.10 Total: -47.12 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -0.36 Total: -6.30 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.49 -11.90 -41.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000311684527.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.926 kcal (2) G-P(sol) polarization free energy of solvation -29.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds