Wall clock time and date at job start Tue Mar 31 2020 12:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47344 * 2 1 4 4 H 1.08996 * 109.47479 * 177.94989 * 3 2 1 5 5 C 1.50700 * 109.47325 * 57.94451 * 3 2 1 6 6 H 1.08000 * 120.00332 * 240.00535 * 5 3 2 7 7 C 1.37874 * 119.99475 * 59.99717 * 5 3 2 8 8 N 1.31513 * 120.00336 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99815 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47007 * 60.00559 * 9 7 5 11 11 H 1.48506 * 109.47260 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47419 * 300.00401 * 9 7 5 13 13 N 1.46909 * 109.47026 * 297.94694 * 3 2 1 14 14 C 1.46896 * 110.99985 * 273.74557 * 13 3 2 15 15 C 1.52994 * 109.47279 * 174.95823 * 14 13 3 16 16 H 1.09004 * 109.51001 * 59.90782 * 15 14 13 17 17 C 1.53100 * 109.51192 * 179.97438 * 15 14 13 18 18 N 1.47009 * 109.25952 * 176.78611 * 17 15 14 19 19 C 1.46902 * 110.99550 * 177.60728 * 18 17 15 20 20 C 1.50703 * 109.47048 * 169.99358 * 19 18 17 21 21 C 1.38231 * 120.00447 * 269.73019 * 20 19 18 22 22 C 1.38240 * 120.00156 * 179.78724 * 21 20 19 23 23 C 1.38233 * 119.99874 * 0.45900 * 22 21 20 24 24 C 1.38234 * 119.99915 * 359.76727 * 23 22 21 25 25 C 1.38237 * 120.00250 * 0.02823 * 24 23 22 26 26 C 1.47010 * 110.74993 * 301.37686 * 18 17 15 27 27 C 1.53106 * 109.25880 * 58.62274 * 26 18 17 28 28 O 1.43016 * 109.50544 * 299.78361 * 15 14 13 29 29 H 1.09003 * 109.47370 * 174.44628 * 1 2 3 30 30 H 1.09000 * 109.46611 * 294.43835 * 1 2 3 31 31 H 1.08996 * 109.47409 * 54.44149 * 1 2 3 32 32 H 1.09010 * 109.46420 * 239.99944 * 2 1 3 33 33 H 1.08992 * 109.47260 * 120.00432 * 2 1 3 34 34 H 0.97008 * 119.99998 * 179.97438 * 8 7 5 35 35 H 1.00896 * 110.99826 * 149.78681 * 13 3 2 36 36 H 1.09002 * 109.47125 * 54.95474 * 14 13 3 37 37 H 1.09001 * 109.46910 * 294.95699 * 14 13 3 38 38 H 1.09001 * 109.50613 * 56.84466 * 17 15 14 39 39 H 1.09006 * 109.53655 * 296.74007 * 17 15 14 40 40 H 1.08991 * 109.47254 * 289.99301 * 19 18 17 41 41 H 1.09004 * 109.47539 * 50.00001 * 19 18 17 42 42 H 1.08002 * 119.99564 * 359.97438 * 21 20 19 43 43 H 1.07998 * 119.99475 * 180.25076 * 22 21 20 44 44 H 1.07997 * 119.99669 * 179.79178 * 23 22 21 45 45 H 1.07997 * 119.99911 * 179.97438 * 24 23 22 46 46 H 1.08006 * 120.00167 * 179.97438 * 25 24 23 47 47 H 1.09003 * 109.50878 * 178.55103 * 26 18 17 48 48 H 1.08998 * 109.51293 * 298.68449 * 26 18 17 49 49 H 1.08991 * 109.51037 * 183.21444 * 27 26 18 50 50 H 1.08998 * 109.53721 * 63.10152 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1294 1.4427 0.0368 5 6 1.4966 2.1675 1.2042 6 1 0.8796 3.0442 1.0737 7 6 1.7871 1.7114 2.4725 8 7 2.5387 0.6440 2.6314 9 14 1.1141 2.6105 3.9652 10 1 -0.3701 2.6108 3.9153 11 1 1.5680 1.9253 5.2021 12 1 1.6096 4.0103 3.9651 13 7 1.5913 2.1205 -1.2236 14 6 2.5289 1.8855 -2.3297 15 6 1.9670 2.4991 -3.6136 16 1 1.8290 3.5714 -3.4746 17 6 2.9438 2.2552 -4.7670 18 7 2.3640 2.7787 -6.0124 19 6 3.2958 2.6153 -7.1362 20 6 2.5858 2.9309 -8.4275 21 6 1.9403 1.9270 -9.1248 22 6 1.2853 2.2174 -10.3070 23 6 1.2838 3.5101 -10.7967 24 6 1.9333 4.5132 -10.1018 25 6 2.5847 4.2236 -8.9175 26 6 1.0749 2.1326 -6.2987 27 6 0.1166 2.3777 -5.1300 28 8 0.7099 1.8913 -3.9230 29 1 -0.3634 -1.0229 -0.0995 30 1 -0.3632 0.4252 0.9356 31 1 -0.3634 0.5976 -0.8360 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.7434 0.3234 3.5238 35 1 1.4618 3.1081 -1.0629 36 1 2.6652 0.8130 -2.4689 37 1 3.4887 2.3465 -2.0965 38 1 3.1243 1.1853 -4.8711 39 1 3.8852 2.7649 -4.5614 40 1 4.1395 3.2937 -7.0103 41 1 3.6570 1.5871 -7.1623 42 1 1.9452 0.9162 -8.7443 43 1 0.7776 1.4337 -10.8496 44 1 0.7749 3.7363 -11.7220 45 1 1.9325 5.5231 -10.4847 46 1 3.0925 5.0073 -8.3748 47 1 0.6515 2.5533 -7.2108 48 1 1.2255 1.0608 -6.4272 49 1 -0.8211 1.8528 -5.3119 50 1 -0.0767 3.4462 -5.0351 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000311684527.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:33 Heat of formation + Delta-G solvation = -31.215925 kcal Electronic energy + Delta-G solvation = -26887.817317 eV Core-core repulsion = 23299.951156 eV Total energy + Delta-G solvation = -3587.866161 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.04041 -39.85838 -38.04265 -36.72634 -34.81772 -33.18211 -32.52893 -31.83608 -31.47868 -29.32390 -28.14596 -26.18731 -25.24914 -24.90091 -23.52268 -23.19231 -21.82428 -21.29165 -20.83209 -18.43388 -17.75918 -17.44193 -17.18051 -16.83487 -16.45511 -16.34260 -15.94993 -15.70495 -15.55765 -15.31781 -15.07146 -14.82075 -14.66294 -14.25164 -13.97507 -13.90350 -13.69082 -13.50683 -13.29648 -13.04750 -12.98501 -12.77516 -12.61381 -12.41934 -12.38151 -12.14023 -11.98181 -11.85667 -11.80191 -11.63076 -11.35049 -11.17949 -10.78233 -10.50865 -10.48369 -9.78655 -9.76373 -9.33436 -8.90672 -8.06993 -6.18796 0.40373 0.52101 1.43949 1.45669 1.52689 2.44403 2.63370 2.88843 3.07862 3.21598 3.53586 3.76419 3.94347 3.98981 4.05665 4.11333 4.16688 4.22685 4.23538 4.33509 4.39387 4.51635 4.56314 4.62138 4.64200 4.67195 4.71276 4.72668 4.79913 4.83680 4.85248 4.97593 4.98277 5.08801 5.11298 5.18272 5.33665 5.42983 5.56695 5.58626 5.64598 5.69458 5.74522 5.83535 5.88101 5.92322 5.94234 6.12906 6.29512 6.38846 6.53592 6.84940 7.07737 7.49634 8.98080 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.032512 B = 0.002274 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.016471 B =12308.923161 C =12450.352970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.095 4.095 3 C 0.223 3.777 4 H -0.034 1.034 5 C -0.522 4.522 6 H 0.057 0.943 7 C 0.016 3.984 8 N -0.917 5.917 9 Si 0.955 3.045 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.271 1.271 13 N -0.674 5.674 14 C 0.072 3.928 15 C 0.111 3.889 16 H 0.060 0.940 17 C 0.032 3.968 18 N -0.534 5.534 19 C 0.094 3.906 20 C -0.094 4.094 21 C -0.124 4.124 22 C -0.128 4.128 23 C -0.125 4.125 24 C -0.128 4.128 25 C -0.111 4.111 26 C 0.026 3.974 27 C 0.057 3.943 28 O -0.383 6.383 29 H 0.031 0.969 30 H 0.030 0.970 31 H 0.052 0.948 32 H 0.016 0.984 33 H 0.056 0.944 34 H 0.260 0.740 35 H 0.330 0.670 36 H 0.056 0.944 37 H 0.039 0.961 38 H 0.038 0.962 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.044 0.956 42 H 0.120 0.880 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.128 0.872 47 H 0.095 0.905 48 H 0.036 0.964 49 H 0.106 0.894 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.401 5.409 -27.053 27.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.134 4.134 3 C 0.115 3.885 4 H -0.017 1.017 5 C -0.561 4.561 6 H 0.075 0.925 7 C -0.183 4.183 8 N -0.556 5.556 9 Si 0.781 3.219 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.304 5.304 14 C -0.058 4.058 15 C 0.052 3.948 16 H 0.078 0.922 17 C -0.097 4.097 18 N -0.258 5.258 19 C -0.033 4.033 20 C -0.094 4.094 21 C -0.142 4.142 22 C -0.146 4.146 23 C -0.143 4.143 24 C -0.146 4.146 25 C -0.129 4.129 26 C -0.102 4.102 27 C -0.019 4.019 28 O -0.302 6.302 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.034 0.966 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.147 0.853 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.116 0.884 40 H 0.111 0.889 41 H 0.062 0.938 42 H 0.138 0.862 43 H 0.155 0.845 44 H 0.159 0.841 45 H 0.157 0.843 46 H 0.146 0.854 47 H 0.114 0.886 48 H 0.054 0.946 49 H 0.124 0.876 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.901 5.134 -26.900 27.401 hybrid contribution 0.929 0.002 1.110 1.447 sum 0.028 5.136 -25.791 26.297 Atomic orbital electron populations 1.21267 0.96164 0.98214 1.00511 1.21278 0.96212 0.97859 0.98014 1.18900 0.90978 0.92195 0.86454 1.01693 1.21409 1.31403 1.11968 0.91307 0.92514 1.25631 0.95400 0.95742 1.01529 1.70021 1.38430 1.24341 1.22849 0.85661 0.78824 0.78745 0.78681 1.19835 1.21215 1.19659 1.60461 1.48013 1.15764 1.06191 1.21861 0.93395 1.00180 0.90389 1.22002 0.83762 0.96457 0.92536 0.92225 1.22696 0.98605 0.98642 0.89744 1.62351 1.03959 1.57094 1.02430 1.21131 0.94546 1.00638 0.86936 1.19785 0.99460 0.94349 0.95835 1.21229 0.98105 0.99029 0.95855 1.21390 0.99459 0.97624 0.96087 1.21481 0.99228 0.92994 1.00619 1.21447 0.97593 1.00380 0.95138 1.21223 0.99450 0.95926 0.96309 1.22812 0.90769 0.97085 0.99576 1.22780 0.96107 0.99648 0.83413 1.88159 1.35325 1.64821 1.41911 0.95027 0.95058 0.92892 0.96567 0.92528 0.93061 0.85252 0.92505 0.94273 0.94325 0.88415 0.88877 0.93778 0.86186 0.84452 0.84146 0.84320 0.85401 0.88650 0.94586 0.87582 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.90 9.46 71.98 0.68 -4.22 16 2 C -0.09 -4.82 5.57 30.59 0.17 -4.65 16 3 C 0.22 11.45 2.30 44.17 0.10 11.55 16 4 H -0.03 -1.95 7.84 -2.39 -0.02 -1.97 16 5 C -0.52 -28.54 7.33 25.60 0.19 -28.35 16 6 H 0.06 3.05 7.60 -2.91 -0.02 3.03 16 7 C 0.02 0.89 5.30 84.65 0.45 1.34 16 8 N -0.92 -53.09 11.34 21.45 0.24 -52.84 16 9 Si 0.95 43.81 29.54 68.60 2.03 45.84 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 13 N -0.67 -29.14 5.38 -495.46 -2.67 -31.81 16 14 C 0.07 2.61 5.15 86.30 0.44 3.06 16 15 C 0.11 3.36 3.05 30.63 0.09 3.45 16 16 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 17 C 0.03 0.78 4.91 86.32 0.42 1.20 16 18 N -0.53 -11.69 4.87 -899.76 -4.38 -16.07 16 19 C 0.09 1.70 5.43 85.56 0.47 2.17 16 20 C -0.09 -1.62 4.13 -19.86 -0.08 -1.70 16 21 C -0.12 -1.98 7.88 22.27 0.18 -1.80 16 22 C -0.13 -1.75 10.05 22.27 0.22 -1.53 16 23 C -0.13 -1.59 10.05 22.27 0.22 -1.37 16 24 C -0.13 -1.74 10.05 22.27 0.22 -1.52 16 25 C -0.11 -1.77 9.70 22.27 0.22 -1.55 16 26 C 0.03 0.55 4.66 86.32 0.40 0.96 16 27 C 0.06 1.43 7.01 72.02 0.50 1.94 16 28 O -0.38 -12.64 10.34 -148.98 -1.54 -14.18 16 29 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.03 1.55 7.37 -2.39 -0.02 1.53 16 31 H 0.05 2.45 7.50 -2.39 -0.02 2.43 16 32 H 0.02 0.76 7.43 -2.38 -0.02 0.74 16 33 H 0.06 3.18 6.13 -2.39 -0.01 3.16 16 34 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 35 H 0.33 14.01 8.25 -89.70 -0.74 13.27 16 36 H 0.06 2.20 7.40 -2.39 -0.02 2.18 16 37 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.10 2.11 8.14 -2.38 -0.02 2.09 16 40 H 0.09 1.52 8.08 -2.39 -0.02 1.50 16 41 H 0.04 0.79 8.02 -2.38 -0.02 0.77 16 42 H 0.12 1.81 8.06 -2.91 -0.02 1.79 16 43 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 44 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 45 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 46 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 47 H 0.10 1.91 5.93 -2.39 -0.01 1.89 16 48 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 50 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -62.60 390.12 -1.26 -63.86 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: 0.16 Total: 26.22 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: 4.90 Total: -21.02 kcal Atomic # 7 Polarization: -93.91 SS G_CDS: -6.81 Total: -100.72 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -1.54 Total: -14.18 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -62.60 -1.26 -63.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000311684527.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.643 kcal (2) G-P(sol) polarization free energy of solvation -62.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds