Wall clock time and date at job start Tue Mar 31 2020 12:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46940 * 2 1 4 4 H 1.09001 * 109.47144 * 301.33824 * 3 2 1 5 5 C 1.50696 * 109.46912 * 181.34380 * 3 2 1 6 6 O 1.21286 * 119.99864 * 250.18282 * 5 3 2 7 7 N 1.34772 * 120.00371 * 70.18574 * 5 3 2 8 8 C 1.46508 * 120.00215 * 180.02562 * 7 5 3 9 9 H 1.09003 * 109.47023 * 34.99318 * 8 7 5 10 10 C 1.50695 * 109.47109 * 154.99750 * 8 7 5 11 11 H 1.08004 * 120.00237 * 0.02562 * 10 8 7 12 12 C 1.37879 * 119.99790 * 179.97438 * 10 8 7 13 13 N 1.31515 * 119.99986 * 0.02562 * 12 10 8 14 14 Si 1.86802 * 120.00013 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47020 * 60.00542 * 14 12 10 16 16 H 1.48505 * 109.46878 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46983 * 300.00161 * 14 12 10 18 18 C 1.53002 * 109.46663 * 274.99849 * 8 7 5 19 19 C 1.52993 * 109.47378 * 64.99915 * 18 8 7 20 20 N 1.46897 * 109.47359 * 61.34247 * 3 2 1 21 21 C 1.46898 * 111.00018 * 59.22059 * 20 3 2 22 22 C 1.46899 * 111.00103 * 183.18115 * 20 3 2 23 23 C 1.50702 * 109.47081 * 163.36690 * 22 20 3 24 24 C 1.38234 * 120.00151 * 269.72319 * 23 22 20 25 25 C 1.38236 * 119.99746 * 179.76738 * 24 23 22 26 26 C 1.38229 * 119.99931 * 0.50534 * 25 24 23 27 27 C 1.38234 * 120.00361 * 359.75117 * 26 25 24 28 28 C 1.38236 * 119.99975 * 359.97438 * 27 26 25 29 29 H 1.09003 * 109.46670 * 294.90402 * 1 2 3 30 30 H 1.08998 * 109.46803 * 174.90911 * 1 2 3 31 31 H 1.08998 * 109.47105 * 54.90307 * 1 2 3 32 32 H 1.08994 * 109.47472 * 120.00072 * 2 1 3 33 33 H 1.09001 * 109.47328 * 240.00331 * 2 1 3 34 34 H 0.96998 * 120.00297 * 359.97438 * 7 5 3 35 35 H 0.97006 * 120.00139 * 180.02562 * 13 12 10 36 36 H 1.09006 * 109.46697 * 184.99996 * 18 8 7 37 37 H 1.09001 * 109.47228 * 304.99874 * 18 8 7 38 38 H 1.08999 * 109.47601 * 179.97438 * 19 18 8 39 39 H 1.09001 * 109.47492 * 300.00135 * 19 18 8 40 40 H 1.09003 * 109.47410 * 59.99514 * 19 18 8 41 41 H 1.08997 * 109.46818 * 68.10371 * 21 20 3 42 42 H 1.08998 * 109.46979 * 188.09952 * 21 20 3 43 43 H 1.09001 * 109.47358 * 308.10621 * 21 20 3 44 44 H 1.08997 * 109.46945 * 283.36463 * 22 20 3 45 45 H 1.08997 * 109.47441 * 43.36388 * 22 20 3 46 46 H 1.08002 * 119.99754 * 0.02562 * 24 23 22 47 47 H 1.07998 * 119.99486 * 180.23654 * 25 24 23 48 48 H 1.08003 * 119.99908 * 179.72227 * 26 25 24 49 49 H 1.07999 * 119.99888 * 179.97438 * 27 26 25 50 50 H 1.07998 * 120.00161 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6572 1.9633 -0.8777 5 6 3.5466 1.4427 -0.0333 6 8 4.1747 1.7911 0.9440 7 7 4.1961 1.0557 -1.1490 8 6 5.6608 1.0553 -1.1812 9 1 6.0457 0.7782 -0.1998 10 6 6.1404 0.0619 -2.2078 11 1 5.4257 -0.5115 -2.7796 12 6 7.4916 -0.1142 -2.4180 13 7 8.3619 0.5844 -1.7222 14 14 8.0863 -1.3461 -3.6901 15 1 7.5614 -0.9694 -5.0272 16 1 9.5710 -1.3464 -3.7227 17 1 7.5992 -2.7023 -3.3312 18 6 6.1631 2.4527 -1.5500 19 6 5.7828 3.4396 -0.4445 20 7 1.5770 2.1257 1.2153 21 6 2.0596 1.4394 2.4212 22 6 1.9848 3.5369 1.2138 23 6 1.1732 4.2954 2.2321 24 6 -0.0212 4.8857 1.8633 25 6 -0.7681 5.5773 2.7986 26 6 -0.3154 5.6876 4.1000 27 6 0.8816 5.1019 4.4675 28 6 1.6257 4.4054 3.5337 29 1 -0.3633 0.4328 0.9322 30 1 -0.3633 -1.0236 -0.0912 31 1 -0.3633 0.5909 -0.8408 32 1 1.8934 -0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 3.6938 0.7768 -1.9305 35 1 9.3126 0.4608 -1.8704 36 1 7.2473 2.4315 -1.6609 37 1 5.7078 2.7663 -2.4894 38 1 6.1410 4.4350 -0.7070 39 1 4.6986 3.4608 -0.3335 40 1 6.2380 3.1260 0.4950 41 1 3.1412 1.5519 2.4949 42 1 1.5880 1.8766 3.3012 43 1 1.8076 0.3806 2.3621 44 1 3.0429 3.6096 1.4653 45 1 1.8165 3.9627 0.2246 46 1 -0.3729 4.8028 0.8455 47 1 -1.7031 6.0352 2.5114 48 1 -0.8967 6.2318 4.8296 49 1 1.2354 5.1885 5.4842 50 1 2.5611 3.9481 3.8206 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339352630.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:36 Heat of formation + Delta-G solvation = -28.205201 kcal Electronic energy + Delta-G solvation = -27940.717332 eV Core-core repulsion = 24352.981726 eV Total energy + Delta-G solvation = -3587.735606 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.50372 -40.03234 -38.16080 -36.55501 -34.81483 -34.06622 -32.69291 -31.86359 -31.67456 -29.45343 -28.25717 -27.59595 -25.11892 -24.41097 -23.34607 -22.81372 -21.87277 -21.40594 -20.84532 -18.89190 -17.78202 -17.56854 -17.37376 -16.89868 -16.39840 -16.16554 -16.12707 -15.77291 -15.26845 -15.19225 -14.74482 -14.59024 -14.26188 -14.03655 -13.92105 -13.62663 -13.46614 -13.36271 -13.21287 -13.04644 -12.88998 -12.76912 -12.66919 -12.62123 -12.34362 -12.18262 -12.03765 -12.00544 -11.79401 -11.66965 -11.61069 -11.53835 -11.08327 -10.97237 -10.53722 -9.74709 -9.64956 -9.57586 -9.01139 -8.16325 -6.33932 0.48809 0.57199 1.43466 1.44838 1.52538 1.85098 2.35954 2.69230 2.76385 3.12706 3.21552 3.85528 3.93192 3.97741 4.07441 4.14735 4.22821 4.29283 4.38714 4.46040 4.51611 4.54645 4.61648 4.67599 4.69315 4.74190 4.80429 4.81580 4.86210 5.00976 5.05750 5.16291 5.17954 5.22641 5.23217 5.24512 5.31600 5.42413 5.55347 5.56546 5.62757 5.67035 5.67683 5.78300 5.79165 5.89556 5.99882 6.03358 6.17510 6.19453 6.75025 7.02692 7.33911 7.62906 8.88058 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.020311 B = 0.003223 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.218508 B = 8684.657646 C = 9493.845592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.109 4.109 3 C 0.071 3.929 4 H 0.120 0.880 5 C 0.471 3.529 6 O -0.576 6.576 7 N -0.704 5.704 8 C 0.282 3.718 9 H -0.005 1.005 10 C -0.547 4.547 11 H 0.071 0.929 12 C 0.016 3.984 13 N -0.916 5.916 14 Si 0.967 3.033 15 H -0.264 1.264 16 H -0.288 1.288 17 H -0.272 1.272 18 C -0.120 4.120 19 C -0.119 4.119 20 N -0.489 5.489 21 C 0.006 3.994 22 C 0.086 3.914 23 C -0.080 4.080 24 C -0.109 4.109 25 C -0.124 4.124 26 C -0.127 4.127 27 C -0.129 4.129 28 C -0.128 4.128 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.401 0.599 35 H 0.264 0.736 36 H 0.068 0.932 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.046 0.954 40 H 0.022 0.978 41 H 0.043 0.957 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.037 0.963 45 H 0.080 0.920 46 H 0.132 0.868 47 H 0.145 0.855 48 H 0.144 0.856 49 H 0.134 0.866 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.866 6.117 5.414 21.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.147 4.147 3 C -0.041 4.041 4 H 0.138 0.862 5 C 0.257 3.743 6 O -0.457 6.457 7 N -0.353 5.353 8 C 0.178 3.822 9 H 0.013 0.987 10 C -0.586 4.586 11 H 0.089 0.911 12 C -0.185 4.185 13 N -0.554 5.554 14 Si 0.792 3.208 15 H -0.189 1.189 16 H -0.213 1.213 17 H -0.197 1.197 18 C -0.159 4.159 19 C -0.176 4.176 20 N -0.211 5.211 21 C -0.142 4.142 22 C -0.041 4.041 23 C -0.080 4.080 24 C -0.128 4.128 25 C -0.142 4.142 26 C -0.145 4.145 27 C -0.147 4.147 28 C -0.147 4.147 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.235 0.765 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.041 0.959 41 H 0.062 0.938 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.055 0.945 45 H 0.098 0.902 46 H 0.150 0.850 47 H 0.162 0.838 48 H 0.161 0.839 49 H 0.152 0.848 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -19.729 6.362 6.121 21.614 hybrid contribution 1.951 -0.751 -0.724 2.212 sum -17.778 5.611 5.397 19.408 Atomic orbital electron populations 1.21547 0.92592 1.01724 1.02733 1.21556 0.98575 0.92105 1.02502 1.22094 0.87422 0.98682 0.95932 0.86200 1.22473 0.92271 0.76686 0.82832 1.90573 1.70064 1.49764 1.35343 1.46428 1.08430 1.65084 1.15327 1.18266 0.76049 0.92925 0.94950 0.98746 1.21570 0.92592 1.22596 1.21798 0.91131 1.25755 0.96845 0.97775 0.98077 1.70046 1.02147 1.41518 1.41680 0.85474 0.76840 0.79096 0.79393 1.18898 1.21340 1.19677 1.21765 1.02473 0.95528 0.96100 1.21644 1.00161 0.97760 0.98032 1.62565 1.56193 1.01054 1.01259 1.22688 1.00100 0.98928 0.92464 1.21102 0.96599 0.88196 0.98199 1.19760 0.96048 0.97998 0.94236 1.21207 0.93714 0.97292 1.00580 1.21450 1.00444 0.98977 0.93348 1.21452 0.96262 0.99754 0.97018 1.21349 0.95593 0.97949 0.99807 1.21163 1.00047 0.99897 0.93605 0.92352 0.92098 0.91764 0.92631 0.90532 0.76471 0.92708 0.91317 0.94265 0.94061 0.93520 0.95858 0.93823 0.91638 0.91366 0.94495 0.90181 0.85018 0.83754 0.83856 0.84799 0.87614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 9.70 71.98 0.70 -1.69 16 2 C -0.11 -2.58 5.10 30.60 0.16 -2.42 16 3 C 0.07 1.93 2.18 44.17 0.10 2.02 16 4 H 0.12 2.77 8.01 -2.39 -0.02 2.75 16 5 C 0.47 17.40 5.04 87.66 0.44 17.84 16 6 O -0.58 -25.35 8.97 -3.05 -0.03 -25.38 16 7 N -0.70 -27.85 5.02 -446.09 -2.24 -30.09 16 8 C 0.28 14.18 2.24 44.24 0.10 14.28 16 9 H -0.01 -0.32 7.58 -2.39 -0.02 -0.34 16 10 C -0.55 -28.60 8.73 25.60 0.22 -28.38 16 11 H 0.07 3.45 7.74 -2.91 -0.02 3.42 16 12 C 0.02 0.83 5.29 84.66 0.45 1.28 16 13 N -0.92 -52.40 11.29 21.45 0.24 -52.16 16 14 Si 0.97 41.90 29.54 68.60 2.03 43.93 16 15 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 16 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 17 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 18 C -0.12 -5.86 5.45 30.59 0.17 -5.69 16 19 C -0.12 -5.31 8.51 71.98 0.61 -4.69 16 20 N -0.49 -13.23 4.09 -906.06 -3.71 -16.94 16 21 C 0.01 0.18 8.51 127.69 1.09 1.27 16 22 C 0.09 2.45 4.52 85.56 0.39 2.83 16 23 C -0.08 -2.03 5.06 -19.86 -0.10 -2.13 16 24 C -0.11 -2.31 9.70 22.27 0.22 -2.10 16 25 C -0.12 -2.20 10.05 22.27 0.22 -1.98 16 26 C -0.13 -2.23 10.05 22.27 0.22 -2.00 16 27 C -0.13 -2.65 10.05 22.27 0.22 -2.43 16 28 C -0.13 -3.24 8.25 22.27 0.18 -3.06 16 29 H 0.06 1.17 7.80 -2.39 -0.02 1.16 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 1.47 6.15 -2.39 -0.01 1.46 16 33 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.40 13.54 8.54 -92.71 -0.79 12.75 16 35 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 36 H 0.07 3.80 5.95 -2.38 -0.01 3.79 16 37 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.05 1.98 5.64 -2.39 -0.01 1.96 16 40 H 0.02 1.12 7.85 -2.39 -0.02 1.10 16 41 H 0.04 1.60 5.26 -2.39 -0.01 1.59 16 42 H 0.06 1.82 6.61 -2.39 -0.02 1.80 16 43 H 0.07 1.90 5.85 -2.39 -0.01 1.89 16 44 H 0.04 1.30 6.30 -2.39 -0.02 1.29 16 45 H 0.08 2.10 7.84 -2.39 -0.02 2.08 16 46 H 0.13 2.39 8.06 -2.91 -0.02 2.36 16 47 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 48 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16 49 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 50 H 0.11 2.88 8.04 -2.91 -0.02 2.86 16 Total: -1.00 -63.91 385.10 1.81 -62.10 By element: Atomic # 1 Polarization: 35.46 SS G_CDS: 0.13 Total: 35.59 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: 5.39 Total: -17.04 kcal Atomic # 7 Polarization: -93.48 SS G_CDS: -5.71 Total: -99.19 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.03 Total: -25.38 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -63.91 1.81 -62.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339352630.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.893 kcal (2) G-P(sol) polarization free energy of solvation -63.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds