Wall clock time and date at job start Tue Mar 31 2020 12:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47206 * 2 1 4 4 N 1.46496 * 109.47064 * 180.02562 * 3 2 1 5 5 C 1.34775 * 119.99970 * 180.02562 * 4 3 2 6 6 O 1.21276 * 120.00019 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00177 * 180.02562 * 5 4 3 8 8 N 1.46896 * 109.47445 * 173.70817 * 7 5 4 9 9 C 1.46903 * 110.99935 * 290.60027 * 8 7 5 10 10 C 1.52996 * 109.46993 * 299.35612 * 9 8 7 11 11 C 1.53003 * 109.47249 * 180.64264 * 10 9 8 12 12 C 1.46901 * 111.00452 * 166.64808 * 8 7 5 13 13 C 1.50695 * 109.47238 * 189.99981 * 12 8 7 14 14 C 1.38643 * 119.75000 * 270.29615 * 13 12 8 15 15 C 1.37614 * 120.24988 * 180.30798 * 14 13 12 16 16 C 1.40713 * 119.74393 * 359.41594 * 15 14 13 17 17 C 1.41394 * 120.24584 * 180.30388 * 16 15 14 18 18 H 1.08005 * 119.99770 * 336.70645 * 17 16 15 19 19 C 1.39944 * 120.00529 * 156.71154 * 17 16 15 20 20 N 1.30829 * 119.99444 * 341.72628 * 19 17 16 21 21 Si 1.86792 * 120.00427 * 161.73021 * 19 17 16 22 22 H 1.48505 * 109.47317 * 94.98179 * 21 19 17 23 23 H 1.48500 * 109.47651 * 214.98220 * 21 19 17 24 24 H 1.48500 * 109.47307 * 334.98446 * 21 19 17 25 25 C 1.40713 * 119.51359 * 0.28451 * 16 15 14 26 26 C 1.37621 * 119.74388 * 359.97438 * 25 16 15 27 27 H 1.09004 * 109.47426 * 59.99644 * 1 2 3 28 28 H 1.09000 * 109.47327 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.46879 * 299.99688 * 1 2 3 30 30 H 1.09002 * 109.47152 * 240.00558 * 2 1 3 31 31 H 1.08997 * 109.47103 * 120.00224 * 2 1 3 32 32 H 1.09002 * 109.46609 * 60.00226 * 3 2 1 33 33 H 1.08997 * 109.47272 * 300.00121 * 3 2 1 34 34 H 0.97006 * 120.00174 * 0.02562 * 4 3 2 35 35 H 1.08992 * 109.47622 * 53.70093 * 7 5 4 36 36 H 1.09010 * 109.46743 * 293.70250 * 7 5 4 37 37 H 1.09005 * 109.47011 * 59.35205 * 9 8 7 38 38 H 1.08996 * 109.47253 * 179.35088 * 9 8 7 39 39 H 1.08996 * 109.47044 * 300.64533 * 10 9 8 40 40 H 1.09003 * 109.47336 * 60.64480 * 10 9 8 41 41 H 1.09000 * 109.46827 * 300.00101 * 11 10 9 42 42 H 1.09003 * 109.46775 * 59.99873 * 11 10 9 43 43 H 1.09000 * 109.46952 * 180.02562 * 11 10 9 44 44 H 1.09000 * 109.47100 * 69.99785 * 12 8 7 45 45 H 1.08999 * 109.47013 * 309.99457 * 12 8 7 46 46 H 1.07997 * 119.87279 * 0.02562 * 14 13 12 47 47 H 1.08003 * 120.13026 * 179.69937 * 15 14 13 48 48 H 0.97004 * 119.99812 * 180.02562 * 20 19 17 49 49 H 1.08000 * 120.13070 * 180.02562 * 25 16 15 50 50 H 1.07997 * 119.87462 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1789 2.6097 -0.0002 6 8 3.5725 3.6600 0.0002 7 6 5.6859 2.6097 -0.0014 8 7 6.1754 3.9864 -0.1525 9 6 5.8949 4.5001 -1.4999 10 6 6.6025 3.6253 -2.5367 11 6 6.3234 4.1696 -3.9391 12 6 7.6092 4.0721 0.1556 13 6 8.0212 5.5197 0.2307 14 6 8.4569 6.1713 -0.9128 15 6 8.8416 7.4913 -0.8547 16 6 8.7797 8.1832 0.3690 17 6 9.1662 9.5415 0.4396 18 1 9.8417 9.9497 -0.2978 19 6 8.6738 10.3569 1.4647 20 7 7.6085 9.9959 2.1329 21 14 9.5372 11.9607 1.8789 22 1 8.8792 13.0783 1.1555 23 1 9.4569 12.2028 3.3418 24 1 10.9618 11.8763 1.4686 25 6 8.3300 7.5136 1.5220 26 6 7.9554 6.1918 1.4415 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 3.9900 0.6024 -0.0013 35 1 6.0486 2.0021 -0.8304 36 1 6.0499 2.1958 0.9390 37 1 4.8200 4.4796 -1.6800 38 1 6.2574 5.5248 -1.5809 39 1 7.6762 3.6365 -2.3495 40 1 6.2316 2.6029 -2.4634 41 1 5.2496 4.1584 -4.1261 42 1 6.6943 5.1920 -4.0124 43 1 6.8271 3.5461 -4.6777 44 1 8.1796 3.5722 -0.6273 45 1 7.8047 3.5887 1.1127 46 1 8.4989 5.6396 -1.8519 47 1 9.1852 7.9956 -1.7458 48 1 7.2669 10.5613 2.8433 49 1 8.2781 8.0351 2.4663 50 1 7.6095 5.6759 2.3250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342701388.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:51 Heat of formation + Delta-G solvation = -29.286623 kcal Electronic energy + Delta-G solvation = -26641.375200 eV Core-core repulsion = 23053.592700 eV Total energy + Delta-G solvation = -3587.782500 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.88042 -38.21125 -36.74541 -35.73229 -33.68552 -32.87620 -32.55902 -30.48936 -29.21227 -28.17951 -26.80346 -25.94321 -24.38065 -22.80542 -21.95961 -21.14438 -20.89107 -20.02188 -19.20754 -17.24668 -16.83422 -16.29892 -16.18182 -15.54744 -15.27334 -15.15211 -14.46146 -14.19771 -14.14847 -13.87248 -13.44274 -13.41508 -13.24266 -13.03099 -12.73927 -12.47889 -12.36130 -11.89314 -11.78936 -11.63209 -11.61064 -11.50955 -11.45917 -11.27061 -11.23087 -11.15475 -10.95500 -10.76930 -10.48848 -10.31468 -10.19211 -9.70675 -9.45025 -9.29838 -9.11344 -9.03759 -7.79376 -7.34936 -7.20233 -6.69116 -4.27474 2.76680 2.79761 3.04671 3.10526 3.15447 3.16926 3.27566 3.97634 4.37492 4.50969 4.61911 4.75831 4.81982 4.95530 5.10012 5.13788 5.28721 5.29372 5.36177 5.39265 5.45951 5.47697 5.67043 5.72050 5.76006 5.78420 5.81249 5.87077 5.98308 6.02183 6.06482 6.22452 6.29579 6.36839 6.44208 6.45776 6.52292 6.70673 7.03570 7.13282 7.30868 7.38626 7.42976 7.53807 7.58605 7.69750 7.96344 8.13233 8.23658 8.36521 8.38079 8.72670 8.96978 9.06284 10.24403 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.017881 B = 0.002601 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.543652 B =10762.316126 C =11574.355967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C 0.119 3.881 4 N -0.742 5.742 5 C 0.511 3.489 6 O -0.511 6.511 7 C 0.030 3.970 8 N -0.510 5.510 9 C 0.052 3.948 10 C -0.164 4.164 11 C -0.145 4.145 12 C 0.118 3.882 13 C -0.206 4.206 14 C -0.082 4.082 15 C -0.229 4.229 16 C 0.112 3.888 17 C -0.462 4.462 18 H 0.076 0.924 19 C 0.075 3.925 20 N -0.789 5.789 21 Si 0.905 3.095 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.261 1.261 25 C -0.170 4.170 26 C -0.077 4.077 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.397 0.603 35 H 0.060 0.940 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.059 0.941 43 H 0.048 0.952 44 H 0.029 0.971 45 H 0.063 0.937 46 H 0.083 0.917 47 H 0.089 0.911 48 H 0.280 0.720 49 H 0.118 0.882 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.437 -19.049 -4.326 20.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C -0.004 4.004 4 N -0.397 5.397 5 C 0.296 3.704 6 O -0.384 6.384 7 C -0.102 4.102 8 N -0.232 5.232 9 C -0.075 4.075 10 C -0.203 4.203 11 C -0.203 4.203 12 C -0.008 4.008 13 C -0.208 4.208 14 C -0.101 4.101 15 C -0.249 4.249 16 C 0.109 3.891 17 C -0.492 4.492 18 H 0.094 0.906 19 C -0.143 4.143 20 N -0.414 5.414 21 Si 0.730 3.270 22 H -0.196 1.196 23 H -0.201 1.201 24 H -0.185 1.185 25 C -0.189 4.189 26 C -0.096 4.096 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.230 0.770 35 H 0.078 0.922 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.047 0.953 45 H 0.082 0.918 46 H 0.102 0.898 47 H 0.107 0.893 48 H 0.091 0.909 49 H 0.135 0.865 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.311 -17.865 -3.776 20.062 hybrid contribution 0.836 -0.206 -0.340 0.926 sum -7.475 -18.071 -4.116 19.984 Atomic orbital electron populations 1.21683 0.94639 1.02029 1.02436 1.21731 0.96946 0.96045 1.02562 1.21336 0.79951 0.96768 1.02391 1.46063 1.07080 1.08779 1.77767 1.20786 0.90283 0.83392 0.75909 1.90727 1.69966 1.31017 1.46695 1.22028 0.91878 0.93491 1.02759 1.62048 1.17224 1.16454 1.27483 1.22321 1.00397 0.99974 0.84842 1.22218 1.01750 0.99716 0.96623 1.21646 1.01195 1.01415 0.96044 1.20822 0.85316 0.95821 0.98829 1.18773 1.13198 0.94233 0.94593 1.20347 0.99628 0.94665 0.95448 1.20902 1.12040 0.95076 0.96854 1.17613 0.88284 0.92698 0.90460 1.19583 1.25110 0.94533 1.09954 0.90603 1.25919 0.93542 0.99943 0.94859 1.69854 1.16590 1.37258 1.17702 0.86351 0.80955 0.81371 0.78337 1.19640 1.20068 1.18486 1.21322 1.05629 0.92916 0.99025 1.20484 0.98885 0.94788 0.95481 0.92345 0.92282 0.92288 0.91444 0.91369 0.91609 0.91737 0.77001 0.92210 0.88369 0.90686 0.89033 0.91523 0.92951 0.93045 0.92225 0.93301 0.95314 0.91844 0.89841 0.89308 0.90922 0.86468 0.89611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.13 -0.82 6.05 -26.73 -0.16 -0.98 16 3 C 0.12 1.11 5.67 -4.04 -0.02 1.08 16 4 N -0.74 -7.26 5.56 -60.30 -0.33 -7.60 16 5 C 0.51 7.15 7.43 -10.99 -0.08 7.07 16 6 O -0.51 -9.69 14.92 5.56 0.08 -9.61 16 7 C 0.03 0.39 5.27 -4.98 -0.03 0.36 16 8 N -0.51 -8.72 4.34 -237.52 -1.03 -9.75 16 9 C 0.05 0.89 4.66 -3.82 -0.02 0.87 16 10 C -0.16 -2.23 5.16 -26.73 -0.14 -2.37 16 11 C -0.14 -1.81 9.91 37.16 0.37 -1.44 16 12 C 0.12 2.05 4.92 -4.98 -0.02 2.03 16 13 C -0.21 -4.49 4.92 -104.33 -0.51 -5.00 16 14 C -0.08 -1.83 7.86 -39.66 -0.31 -2.14 16 15 C -0.23 -5.70 9.80 -38.88 -0.38 -6.09 16 16 C 0.11 3.05 5.59 -106.83 -0.60 2.45 16 17 C -0.46 -12.54 9.06 -37.74 -0.34 -12.88 16 18 H 0.08 1.98 7.91 -52.48 -0.42 1.56 16 19 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 20 N -0.79 -21.06 10.90 55.55 0.61 -20.46 16 21 Si 0.91 19.07 29.60 -169.99 -5.03 14.03 16 22 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 25 C -0.17 -4.53 8.71 -38.87 -0.34 -4.86 16 26 C -0.08 -1.86 9.67 -39.66 -0.38 -2.24 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.35 8.14 -51.92 -0.42 -0.08 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.40 2.60 8.47 -40.82 -0.35 2.25 16 35 H 0.06 0.64 5.89 -51.93 -0.31 0.34 16 36 H 0.10 1.10 7.86 -51.92 -0.41 0.69 16 37 H 0.07 1.36 6.39 -51.93 -0.33 1.03 16 38 H 0.09 1.83 5.90 -51.93 -0.31 1.52 16 39 H 0.07 0.94 5.68 -51.93 -0.29 0.65 16 40 H 0.05 0.63 6.26 -51.93 -0.32 0.31 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.03 0.46 6.04 -51.93 -0.31 0.15 16 45 H 0.06 1.03 7.83 -51.93 -0.41 0.62 16 46 H 0.08 1.65 7.18 -52.49 -0.38 1.27 16 47 H 0.09 2.10 8.06 -52.48 -0.42 1.67 16 48 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 49 H 0.12 3.24 6.09 -52.49 -0.32 2.93 16 50 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 393.68 15.07 5.93 5.93 Total: -1.00 -31.20 393.68 -10.82 -42.02 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -8.36 Total: 8.19 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: -2.69 Total: -22.77 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: -0.76 Total: -37.80 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.08 Total: -9.61 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.20 -10.82 -42.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342701388.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.738 kcal (2) G-P(sol) polarization free energy of solvation -31.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds