Wall clock time and date at job start Tue Mar 31 2020 12:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47206 * 2 1 4 4 N 1.46496 * 109.47064 * 180.02562 * 3 2 1 5 5 C 1.34775 * 119.99970 * 180.02562 * 4 3 2 6 6 O 1.21276 * 120.00019 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00177 * 180.02562 * 5 4 3 8 8 N 1.46896 * 109.47445 * 173.70817 * 7 5 4 9 9 C 1.46903 * 110.99935 * 290.60027 * 8 7 5 10 10 C 1.52996 * 109.46993 * 299.35612 * 9 8 7 11 11 C 1.53003 * 109.47249 * 180.64264 * 10 9 8 12 12 C 1.46901 * 111.00452 * 166.64808 * 8 7 5 13 13 C 1.50695 * 109.47238 * 189.99981 * 12 8 7 14 14 C 1.38643 * 119.75000 * 270.29615 * 13 12 8 15 15 C 1.37614 * 120.24988 * 180.30798 * 14 13 12 16 16 C 1.40713 * 119.74393 * 359.41594 * 15 14 13 17 17 C 1.41394 * 120.24584 * 180.30388 * 16 15 14 18 18 H 1.08005 * 119.99770 * 336.70645 * 17 16 15 19 19 C 1.39944 * 120.00529 * 156.71154 * 17 16 15 20 20 N 1.30829 * 119.99444 * 341.72628 * 19 17 16 21 21 Si 1.86792 * 120.00427 * 161.73021 * 19 17 16 22 22 H 1.48505 * 109.47317 * 94.98179 * 21 19 17 23 23 H 1.48500 * 109.47651 * 214.98220 * 21 19 17 24 24 H 1.48500 * 109.47307 * 334.98446 * 21 19 17 25 25 C 1.40713 * 119.51359 * 0.28451 * 16 15 14 26 26 C 1.37621 * 119.74388 * 359.97438 * 25 16 15 27 27 H 1.09004 * 109.47426 * 59.99644 * 1 2 3 28 28 H 1.09000 * 109.47327 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.46879 * 299.99688 * 1 2 3 30 30 H 1.09002 * 109.47152 * 240.00558 * 2 1 3 31 31 H 1.08997 * 109.47103 * 120.00224 * 2 1 3 32 32 H 1.09002 * 109.46609 * 60.00226 * 3 2 1 33 33 H 1.08997 * 109.47272 * 300.00121 * 3 2 1 34 34 H 0.97006 * 120.00174 * 0.02562 * 4 3 2 35 35 H 1.08992 * 109.47622 * 53.70093 * 7 5 4 36 36 H 1.09010 * 109.46743 * 293.70250 * 7 5 4 37 37 H 1.09005 * 109.47011 * 59.35205 * 9 8 7 38 38 H 1.08996 * 109.47253 * 179.35088 * 9 8 7 39 39 H 1.08996 * 109.47044 * 300.64533 * 10 9 8 40 40 H 1.09003 * 109.47336 * 60.64480 * 10 9 8 41 41 H 1.09000 * 109.46827 * 300.00101 * 11 10 9 42 42 H 1.09003 * 109.46775 * 59.99873 * 11 10 9 43 43 H 1.09000 * 109.46952 * 180.02562 * 11 10 9 44 44 H 1.09000 * 109.47100 * 69.99785 * 12 8 7 45 45 H 1.08999 * 109.47013 * 309.99457 * 12 8 7 46 46 H 1.07997 * 119.87279 * 0.02562 * 14 13 12 47 47 H 1.08003 * 120.13026 * 179.69937 * 15 14 13 48 48 H 0.97004 * 119.99812 * 180.02562 * 20 19 17 49 49 H 1.08000 * 120.13070 * 180.02562 * 25 16 15 50 50 H 1.07997 * 119.87462 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1789 2.6097 -0.0002 6 8 3.5725 3.6600 0.0002 7 6 5.6859 2.6097 -0.0014 8 7 6.1754 3.9864 -0.1525 9 6 5.8949 4.5001 -1.4999 10 6 6.6025 3.6253 -2.5367 11 6 6.3234 4.1696 -3.9391 12 6 7.6092 4.0721 0.1556 13 6 8.0212 5.5197 0.2307 14 6 8.4569 6.1713 -0.9128 15 6 8.8416 7.4913 -0.8547 16 6 8.7797 8.1832 0.3690 17 6 9.1662 9.5415 0.4396 18 1 9.8417 9.9497 -0.2978 19 6 8.6738 10.3569 1.4647 20 7 7.6085 9.9959 2.1329 21 14 9.5372 11.9607 1.8789 22 1 8.8792 13.0783 1.1555 23 1 9.4569 12.2028 3.3418 24 1 10.9618 11.8763 1.4686 25 6 8.3300 7.5136 1.5220 26 6 7.9554 6.1918 1.4415 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 3.9900 0.6024 -0.0013 35 1 6.0486 2.0021 -0.8304 36 1 6.0499 2.1958 0.9390 37 1 4.8200 4.4796 -1.6800 38 1 6.2574 5.5248 -1.5809 39 1 7.6762 3.6365 -2.3495 40 1 6.2316 2.6029 -2.4634 41 1 5.2496 4.1584 -4.1261 42 1 6.6943 5.1920 -4.0124 43 1 6.8271 3.5461 -4.6777 44 1 8.1796 3.5722 -0.6273 45 1 7.8047 3.5887 1.1127 46 1 8.4989 5.6396 -1.8519 47 1 9.1852 7.9956 -1.7458 48 1 7.2669 10.5613 2.8433 49 1 8.2781 8.0351 2.4663 50 1 7.6095 5.6759 2.3250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342701388.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:50 Heat of formation + Delta-G solvation = -48.601335 kcal Electronic energy + Delta-G solvation = -26642.212748 eV Core-core repulsion = 23053.592700 eV Total energy + Delta-G solvation = -3588.620049 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.01895 -39.75028 -38.25182 -36.63857 -35.54373 -33.89044 -33.51331 -32.17579 -31.11553 -29.45245 -28.26478 -26.89180 -25.87556 -24.07009 -22.83241 -22.64380 -22.43779 -21.36580 -20.58274 -19.20946 -17.89213 -17.29859 -17.18996 -17.12982 -16.40353 -16.35810 -15.95699 -15.68372 -15.32707 -15.13079 -15.00685 -14.83463 -14.28649 -14.23152 -13.79818 -13.75468 -13.53439 -13.35996 -13.14581 -12.91697 -12.86916 -12.74877 -12.67083 -12.57903 -12.50707 -12.26743 -12.19544 -12.03151 -11.99112 -11.74381 -11.46113 -11.35336 -11.18687 -10.96392 -10.74781 -10.05461 -9.29511 -9.22979 -8.91911 -8.60970 -6.30158 0.97879 1.20195 1.36557 1.48094 1.53844 1.72769 2.17249 2.21148 2.72098 3.26789 3.81599 3.89300 3.97130 4.02338 4.05162 4.08485 4.25799 4.36008 4.36530 4.38279 4.44061 4.46952 4.60690 4.65947 4.67153 4.73126 4.77150 4.84083 4.89055 4.94375 5.02457 5.10485 5.14711 5.17471 5.20730 5.25053 5.26702 5.35699 5.39924 5.48320 5.51730 5.54768 5.75016 5.97766 6.13528 6.18073 6.23937 6.36302 6.43315 6.68454 6.75466 6.97504 7.09120 7.39111 8.35002 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.017881 B = 0.002601 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.543652 B =10762.316126 C =11574.355967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C 0.117 3.883 4 N -0.721 5.721 5 C 0.507 3.493 6 O -0.572 6.572 7 C 0.033 3.967 8 N -0.539 5.539 9 C 0.060 3.940 10 C -0.153 4.153 11 C -0.145 4.145 12 C 0.124 3.876 13 C -0.192 4.192 14 C -0.077 4.077 15 C -0.246 4.246 16 C 0.077 3.923 17 C -0.502 4.502 18 H 0.074 0.926 19 C 0.031 3.969 20 N -0.827 5.827 21 Si 0.983 3.017 22 H -0.263 1.263 23 H -0.266 1.266 24 H -0.257 1.257 25 C -0.196 4.196 26 C -0.088 4.088 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.417 0.583 35 H 0.094 0.906 36 H 0.123 0.877 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.051 0.949 42 H 0.044 0.956 43 H 0.071 0.929 44 H 0.054 0.946 45 H 0.081 0.919 46 H 0.114 0.886 47 H 0.092 0.908 48 H 0.286 0.714 49 H 0.097 0.903 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.058 -22.271 -5.032 23.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.006 4.006 4 N -0.376 5.376 5 C 0.294 3.706 6 O -0.450 6.450 7 C -0.098 4.098 8 N -0.261 5.261 9 C -0.068 4.068 10 C -0.192 4.192 11 C -0.203 4.203 12 C -0.002 4.002 13 C -0.193 4.193 14 C -0.096 4.096 15 C -0.266 4.266 16 C 0.075 3.925 17 C -0.531 4.531 18 H 0.092 0.908 19 C -0.183 4.183 20 N -0.453 5.453 21 Si 0.803 3.197 22 H -0.188 1.188 23 H -0.190 1.190 24 H -0.181 1.181 25 C -0.215 4.215 26 C -0.107 4.107 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.254 0.746 35 H 0.111 0.889 36 H 0.141 0.859 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.100 0.900 46 H 0.131 0.869 47 H 0.111 0.889 48 H 0.097 0.903 49 H 0.115 0.885 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.930 -21.165 -4.493 23.044 hybrid contribution 0.598 0.591 -0.174 0.858 sum -7.332 -20.574 -4.667 22.335 Atomic orbital electron populations 1.21707 0.94447 1.02823 1.02001 1.21671 0.96998 0.93626 1.03832 1.21392 0.79548 0.98857 1.00849 1.45892 1.07386 1.08590 1.75683 1.21093 0.90934 0.83470 0.75101 1.90717 1.71092 1.33317 1.49824 1.22121 0.90874 0.91455 1.05303 1.61790 1.16832 1.19704 1.27822 1.22105 0.99568 0.98816 0.86310 1.22114 1.01219 1.00108 0.95771 1.21646 1.01482 1.00986 0.96152 1.20759 0.86002 0.92571 1.00832 1.19283 1.10206 0.96642 0.93205 1.20644 0.98177 0.93796 0.96964 1.21126 1.12643 0.96468 0.96334 1.17962 0.89543 0.93492 0.91505 1.19826 1.26507 0.95276 1.11540 0.90829 1.26812 0.93752 1.03595 0.94119 1.69924 1.17918 1.39047 1.18458 0.85195 0.79566 0.76507 0.78420 1.18807 1.19016 1.18089 1.21283 1.07681 0.94250 0.98316 1.20743 0.98634 0.94084 0.97190 0.92767 0.90819 0.92870 0.90007 0.90130 0.93425 0.93221 0.74631 0.88889 0.85938 0.92395 0.92854 0.91405 0.90570 0.93036 0.93730 0.91030 0.92802 0.90043 0.86858 0.88928 0.90323 0.88503 0.88262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 71.98 0.71 -0.74 16 2 C -0.12 -1.18 6.05 30.59 0.19 -1.00 16 3 C 0.12 2.04 5.67 86.38 0.49 2.53 16 4 N -0.72 -12.32 5.56 -463.07 -2.57 -14.90 16 5 C 0.51 13.33 7.43 87.66 0.65 13.98 16 6 O -0.57 -21.87 14.92 -3.02 -0.05 -21.92 16 7 C 0.03 0.74 5.27 85.56 0.45 1.19 16 8 N -0.54 -17.32 4.34 -905.38 -3.93 -21.24 16 9 C 0.06 1.98 4.66 86.30 0.40 2.38 16 10 C -0.15 -3.68 5.16 30.59 0.16 -3.53 16 11 C -0.14 -3.28 9.91 71.98 0.71 -2.57 16 12 C 0.12 3.96 4.92 85.56 0.42 4.38 16 13 C -0.19 -8.19 4.92 -19.67 -0.10 -8.29 16 14 C -0.08 -3.41 7.86 22.22 0.17 -3.24 16 15 C -0.25 -12.61 9.80 22.73 0.22 -12.39 16 16 C 0.08 4.41 5.59 -21.29 -0.12 4.29 16 17 C -0.50 -28.58 9.06 23.46 0.21 -28.36 16 18 H 0.07 4.03 7.91 -2.91 -0.02 4.01 16 19 C 0.03 1.68 5.14 85.26 0.44 2.12 16 20 N -0.83 -46.24 10.90 21.83 0.24 -46.00 16 21 Si 0.98 40.23 29.60 68.60 2.03 42.26 16 22 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 23 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16 24 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 25 C -0.20 -10.95 8.71 22.73 0.20 -10.75 16 26 C -0.09 -4.28 9.67 22.22 0.21 -4.06 16 27 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.42 3.80 8.47 -92.70 -0.79 3.01 16 35 H 0.09 1.49 5.89 -2.39 -0.01 1.48 16 36 H 0.12 2.17 7.86 -2.38 -0.02 2.15 16 37 H 0.06 2.11 6.39 -2.38 -0.02 2.09 16 38 H 0.05 2.14 5.90 -2.39 -0.01 2.13 16 39 H 0.07 1.64 5.68 -2.39 -0.01 1.62 16 40 H 0.08 1.48 6.26 -2.39 -0.01 1.47 16 41 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.05 1.47 6.04 -2.39 -0.01 1.46 16 45 H 0.08 2.33 7.83 -2.39 -0.02 2.31 16 46 H 0.11 4.27 7.18 -2.91 -0.02 4.25 16 47 H 0.09 4.52 8.06 -2.91 -0.02 4.50 16 48 H 0.29 14.48 8.30 -92.71 -0.77 13.71 16 49 H 0.10 5.71 6.09 -2.91 -0.02 5.69 16 50 H 0.10 4.46 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -73.38 393.68 1.29 -72.09 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: 0.14 Total: 33.78 kcal Atomic # 6 Polarization: -49.50 SS G_CDS: 5.43 Total: -44.07 kcal Atomic # 7 Polarization: -75.88 SS G_CDS: -6.26 Total: -82.15 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.05 Total: -21.92 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Total: -73.38 1.29 -72.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342701388.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.485 kcal (2) G-P(sol) polarization free energy of solvation -73.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds