Wall clock time and date at job start Tue Mar 31 2020 12:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46971 * 2 1 4 4 N 1.46506 * 109.46767 * 179.97438 * 3 2 1 5 5 C 1.36934 * 119.99902 * 274.33540 * 4 3 2 6 6 H 1.07998 * 120.00526 * 326.01271 * 5 4 3 7 7 C 1.38810 * 119.99547 * 146.01844 * 5 4 3 8 8 N 1.31617 * 119.99850 * 156.91643 * 7 5 4 9 9 Si 1.86802 * 120.00114 * 336.90894 * 7 5 4 10 10 H 1.48499 * 109.46994 * 95.50218 * 9 7 5 11 11 H 1.48501 * 109.47292 * 215.50215 * 9 7 5 12 12 H 1.48500 * 109.47290 * 335.50090 * 9 7 5 13 13 C 1.46502 * 119.99586 * 94.33988 * 4 3 2 14 14 C 1.50703 * 109.47263 * 89.99780 * 13 4 3 15 15 O 1.21281 * 119.99874 * 359.97438 * 14 13 4 16 16 N 1.34769 * 119.99898 * 179.97438 * 14 13 4 17 17 C 1.46500 * 119.99949 * 179.97438 * 16 14 13 18 18 H 1.08999 * 109.47113 * 32.40150 * 17 16 14 19 19 C 1.53005 * 109.46992 * 272.40444 * 17 16 14 20 20 C 1.53003 * 109.47375 * 152.40545 * 17 16 14 21 21 C 1.50699 * 109.46929 * 296.64586 * 20 17 16 22 22 C 1.38255 * 119.99913 * 96.55163 * 21 20 17 23 23 C 1.38212 * 120.00496 * 179.97438 * 22 21 20 24 24 C 1.38266 * 119.99494 * 0.02562 * 23 22 21 25 25 C 1.38213 * 119.99890 * 359.97438 * 24 23 22 26 26 C 1.38210 * 120.00258 * 276.28092 * 21 20 17 27 27 C 1.50707 * 120.00009 * 359.97438 * 26 21 20 28 28 H 1.08997 * 109.47579 * 299.99806 * 1 2 3 29 29 H 1.09001 * 109.47145 * 60.00470 * 1 2 3 30 30 H 1.09006 * 109.47025 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47178 * 239.99638 * 2 1 3 32 32 H 1.09003 * 109.46822 * 120.00227 * 2 1 3 33 33 H 1.09000 * 109.47088 * 60.00159 * 3 2 1 34 34 H 1.08996 * 109.47234 * 299.99590 * 3 2 1 35 35 H 0.97006 * 119.99893 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.46975 * 329.99698 * 13 4 3 37 37 H 1.08998 * 109.46904 * 209.99485 * 13 4 3 38 38 H 0.97002 * 120.00473 * 0.02562 * 16 14 13 39 39 H 1.08999 * 109.46951 * 299.99805 * 19 17 16 40 40 H 1.09002 * 109.47050 * 59.99788 * 19 17 16 41 41 H 1.08999 * 109.46906 * 180.02562 * 19 17 16 42 42 H 1.08997 * 109.46969 * 56.64205 * 20 17 16 43 43 H 1.08994 * 109.47331 * 176.64452 * 20 17 16 44 44 H 1.08002 * 119.99997 * 0.02562 * 22 21 20 45 45 H 1.07992 * 120.00718 * 180.02562 * 23 22 21 46 46 H 1.07997 * 119.99943 * 179.97438 * 24 23 22 47 47 H 1.07999 * 119.99921 * 179.97438 * 25 24 23 48 48 H 1.08996 * 109.46952 * 84.29464 * 27 26 21 49 49 H 1.08994 * 109.46797 * 204.29788 * 27 26 21 50 50 H 1.08999 * 109.46815 * 324.29807 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.3530 1.1834 6 1 3.7873 1.8098 2.0757 7 6 5.3994 0.6752 1.2355 8 7 6.2667 0.9492 2.1868 9 14 5.7971 -0.6260 -0.0444 10 1 6.6016 -0.0183 -1.1347 11 1 6.5712 -1.7235 0.5893 12 1 4.5346 -1.1708 -0.6054 13 6 4.2380 1.5383 -1.2642 14 6 4.4893 2.9879 -1.5907 15 8 4.0946 3.8556 -0.8409 16 7 5.1527 3.3200 -2.7158 17 6 5.3965 4.7292 -3.0335 18 1 5.5238 5.2932 -2.1095 19 6 4.2052 5.2898 -3.8130 20 6 6.6635 4.8489 -3.8828 21 6 7.8499 4.3730 -3.0847 22 6 8.3072 3.0767 -3.2321 23 6 9.3957 2.6403 -2.5006 24 6 10.0269 3.5002 -1.6209 25 6 9.5697 4.7962 -1.4735 26 6 8.4844 5.2342 -2.2095 27 6 7.9901 6.6494 -2.0536 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 7.1124 0.4753 2.2235 36 1 3.6492 1.0832 -2.0607 37 1 5.1904 1.0161 -1.1727 38 1 5.4681 2.6261 -3.3158 39 1 4.0778 4.7258 -4.7370 40 1 3.3025 5.2046 -3.2080 41 1 4.3868 6.3382 -4.0497 42 1 6.5594 4.2370 -4.7788 43 1 6.8121 5.8900 -4.1690 44 1 7.8144 2.4051 -3.9196 45 1 9.7532 1.6279 -2.6161 46 1 10.8771 3.1592 -1.0490 47 1 10.0625 5.4677 -0.7861 48 1 7.1714 6.6711 -1.3344 49 1 8.8036 7.2812 -1.6974 50 1 7.6377 7.0192 -3.0165 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350661813.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:28 Heat of formation + Delta-G solvation = -2.353456 kcal Electronic energy + Delta-G solvation = -28051.429064 eV Core-core repulsion = 24464.814474 eV Total energy + Delta-G solvation = -3586.614590 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.79957 -38.74665 -36.35415 -35.29012 -32.88978 -32.83075 -31.77396 -31.20490 -30.34630 -27.25038 -27.16231 -26.03682 -25.68031 -22.50699 -22.00535 -21.54099 -20.51550 -20.04829 -19.66902 -17.16565 -16.40821 -16.29988 -15.79133 -15.39166 -15.07540 -14.95172 -14.49207 -14.06354 -14.00267 -13.66402 -13.50063 -13.23125 -12.99755 -12.87285 -12.75860 -12.48003 -12.35766 -12.31593 -12.17448 -12.05793 -11.88493 -11.68804 -11.52155 -11.15439 -10.89148 -10.79427 -10.77433 -10.70653 -10.62506 -10.53250 -10.05910 -9.83276 -9.51005 -9.03980 -8.61631 -8.53922 -8.46703 -8.34873 -6.87104 -5.94157 -3.30463 1.52618 1.56850 3.23073 3.41431 3.44983 3.59489 3.74567 3.90936 4.51420 4.76271 4.88055 4.98915 5.01901 5.07088 5.13757 5.29814 5.34343 5.38850 5.45455 5.53687 5.60940 5.64094 5.66556 5.73016 5.78560 5.81096 5.83235 5.85412 5.91702 5.97251 6.03626 6.17815 6.18774 6.19836 6.22115 6.31923 6.37887 6.41815 6.55432 6.58845 6.63600 6.68851 6.78502 6.92786 7.06847 7.11656 7.19014 7.97688 8.19084 8.43801 8.94747 9.14946 9.74369 10.11189 11.21927 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.012356 B = 0.004975 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.498257 B = 5627.305147 C = 6911.423000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.158 3.842 4 N -0.579 5.579 5 C -0.253 4.253 6 H 0.081 0.919 7 C 0.031 3.969 8 N -0.895 5.895 9 Si 0.866 3.134 10 H -0.285 1.285 11 H -0.300 1.300 12 H -0.266 1.266 13 C 0.117 3.883 14 C 0.489 3.511 15 O -0.519 6.519 16 N -0.739 5.739 17 C 0.145 3.855 18 H 0.088 0.912 19 C -0.160 4.160 20 C -0.088 4.088 21 C -0.079 4.079 22 C -0.110 4.110 23 C -0.122 4.122 24 C -0.118 4.118 25 C -0.117 4.117 26 C -0.082 4.082 27 C -0.116 4.116 28 H 0.051 0.949 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.038 0.962 35 H 0.262 0.738 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.389 0.611 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.116 0.884 45 H 0.118 0.882 46 H 0.119 0.881 47 H 0.119 0.881 48 H 0.073 0.927 49 H 0.062 0.938 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.935 5.978 -15.194 16.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.185 4.185 3 C 0.032 3.968 4 N -0.299 5.299 5 C -0.382 4.382 6 H 0.098 0.902 7 C -0.169 4.169 8 N -0.536 5.536 9 Si 0.697 3.303 10 H -0.214 1.214 11 H -0.228 1.228 12 H -0.191 1.191 13 C -0.013 4.013 14 C 0.274 3.726 15 O -0.393 6.393 16 N -0.394 5.394 17 C 0.040 3.960 18 H 0.106 0.894 19 C -0.218 4.218 20 C -0.126 4.126 21 C -0.079 4.079 22 C -0.128 4.128 23 C -0.140 4.140 24 C -0.136 4.136 25 C -0.135 4.135 26 C -0.082 4.082 27 C -0.173 4.173 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.222 0.778 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.103 0.897 44 H 0.134 0.866 45 H 0.136 0.864 46 H 0.137 0.863 47 H 0.137 0.863 48 H 0.092 0.908 49 H 0.081 0.919 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.756 6.583 -14.469 15.993 hybrid contribution 0.750 -1.244 -0.882 1.700 sum 2.507 5.339 -15.350 16.445 Atomic orbital electron populations 1.21722 0.97129 1.00510 1.01064 1.22129 0.93838 1.00574 1.01973 1.20872 0.83177 0.93364 0.99406 1.43748 1.00694 1.83590 1.01842 1.18780 1.03301 1.28357 0.87724 0.90153 1.25361 0.96623 0.98319 0.96555 1.69896 1.07349 1.41211 1.35178 0.87082 0.78061 0.83596 0.81559 1.21404 1.22830 1.19093 1.21342 0.98411 0.91121 0.90465 1.22773 0.76502 0.94125 0.79230 1.90599 1.49710 1.51079 1.47862 1.46392 1.60538 1.06921 1.25561 1.20782 0.92404 0.84253 0.98564 0.89408 1.22171 0.99149 1.00334 1.00159 1.20951 0.91934 1.02276 0.97413 1.19570 0.96425 0.93917 0.97954 1.20929 0.96739 0.95061 1.00089 1.21083 0.96481 0.99378 0.97015 1.21089 1.00226 0.93920 0.98391 1.20987 0.96980 0.96275 0.99230 1.19710 0.95747 0.96204 0.96526 1.20852 1.01612 0.92483 1.02341 0.93014 0.93544 0.93688 0.93294 0.91501 0.93062 0.94354 0.92856 0.91516 0.90412 0.77788 0.92793 0.91971 0.92224 0.90864 0.89675 0.86562 0.86412 0.86323 0.86314 0.90788 0.91875 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 37.16 0.37 -1.77 16 2 C -0.15 -2.68 6.24 -26.73 -0.17 -2.84 16 3 C 0.16 3.29 5.67 -4.04 -0.02 3.26 16 4 N -0.58 -14.20 1.64 -174.60 -0.29 -14.48 16 5 C -0.25 -7.30 9.95 -15.06 -0.15 -7.45 16 6 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 7 C 0.03 0.92 5.31 -17.43 -0.09 0.82 16 8 N -0.90 -27.94 13.97 55.49 0.78 -27.17 16 9 Si 0.87 21.70 24.93 -169.99 -4.24 17.47 16 10 H -0.29 -6.79 6.66 56.52 0.38 -6.42 16 11 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 13 C 0.12 2.56 4.98 -5.19 -0.03 2.54 16 14 C 0.49 10.40 7.89 -10.99 -0.09 10.31 16 15 O -0.52 -13.10 16.05 5.56 0.09 -13.01 16 16 N -0.74 -12.01 4.63 -53.80 -0.25 -12.26 16 17 C 0.15 2.05 2.60 -67.93 -0.18 1.87 16 18 H 0.09 1.51 6.79 -51.93 -0.35 1.16 16 19 C -0.16 -1.92 9.51 37.16 0.35 -1.56 16 20 C -0.09 -1.00 4.40 -27.88 -0.12 -1.12 16 21 C -0.08 -1.09 4.84 -104.63 -0.51 -1.59 16 22 C -0.11 -1.55 9.46 -39.58 -0.37 -1.93 16 23 C -0.12 -1.78 10.05 -39.58 -0.40 -2.18 16 24 C -0.12 -1.72 10.05 -39.58 -0.40 -2.12 16 25 C -0.12 -1.68 9.68 -39.58 -0.38 -2.07 16 26 C -0.08 -1.16 5.88 -104.62 -0.62 -1.78 16 27 C -0.12 -1.36 9.19 36.01 0.33 -1.02 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.05 1.11 8.07 -51.93 -0.42 0.69 16 34 H 0.04 0.74 8.04 -51.93 -0.42 0.32 16 35 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 36 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 37 H 0.08 1.82 2.85 -51.93 -0.15 1.68 16 38 H 0.39 5.35 8.52 -40.82 -0.35 5.00 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.70 8.04 -51.93 -0.42 0.28 16 43 H 0.08 0.81 6.30 -51.93 -0.33 0.48 16 44 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 45 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 46 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 47 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 48 H 0.07 0.96 7.75 -51.93 -0.40 0.56 16 49 H 0.06 0.64 8.05 -51.93 -0.42 0.22 16 50 H 0.07 0.65 6.29 -51.93 -0.33 0.32 16 LS Contribution 400.20 15.07 6.03 6.03 Total: -1.00 -34.65 400.20 -9.00 -43.65 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -8.65 Total: 8.39 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -2.47 Total: -8.62 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: 0.24 Total: -53.91 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.09 Total: -13.01 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.24 Total: 17.47 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.65 -9.00 -43.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350661813.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.296 kcal (2) G-P(sol) polarization free energy of solvation -34.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds