Wall clock time and date at job start Tue Mar 31 2020 12:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46971 * 2 1 4 4 N 1.46506 * 109.46767 * 179.97438 * 3 2 1 5 5 C 1.36934 * 119.99902 * 274.33540 * 4 3 2 6 6 H 1.07998 * 120.00526 * 326.01271 * 5 4 3 7 7 C 1.38810 * 119.99547 * 146.01844 * 5 4 3 8 8 N 1.31617 * 119.99850 * 156.91643 * 7 5 4 9 9 Si 1.86802 * 120.00114 * 336.90894 * 7 5 4 10 10 H 1.48499 * 109.46994 * 95.50218 * 9 7 5 11 11 H 1.48501 * 109.47292 * 215.50215 * 9 7 5 12 12 H 1.48500 * 109.47290 * 335.50090 * 9 7 5 13 13 C 1.46502 * 119.99586 * 94.33988 * 4 3 2 14 14 C 1.50703 * 109.47263 * 89.99780 * 13 4 3 15 15 O 1.21281 * 119.99874 * 359.97438 * 14 13 4 16 16 N 1.34769 * 119.99898 * 179.97438 * 14 13 4 17 17 C 1.46500 * 119.99949 * 179.97438 * 16 14 13 18 18 H 1.08999 * 109.47113 * 32.40150 * 17 16 14 19 19 C 1.53005 * 109.46992 * 272.40444 * 17 16 14 20 20 C 1.53003 * 109.47375 * 152.40545 * 17 16 14 21 21 C 1.50699 * 109.46929 * 296.64586 * 20 17 16 22 22 C 1.38255 * 119.99913 * 96.55163 * 21 20 17 23 23 C 1.38212 * 120.00496 * 179.97438 * 22 21 20 24 24 C 1.38266 * 119.99494 * 0.02562 * 23 22 21 25 25 C 1.38213 * 119.99890 * 359.97438 * 24 23 22 26 26 C 1.38210 * 120.00258 * 276.28092 * 21 20 17 27 27 C 1.50707 * 120.00009 * 359.97438 * 26 21 20 28 28 H 1.08997 * 109.47579 * 299.99806 * 1 2 3 29 29 H 1.09001 * 109.47145 * 60.00470 * 1 2 3 30 30 H 1.09006 * 109.47025 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47178 * 239.99638 * 2 1 3 32 32 H 1.09003 * 109.46822 * 120.00227 * 2 1 3 33 33 H 1.09000 * 109.47088 * 60.00159 * 3 2 1 34 34 H 1.08996 * 109.47234 * 299.99590 * 3 2 1 35 35 H 0.97006 * 119.99893 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.46975 * 329.99698 * 13 4 3 37 37 H 1.08998 * 109.46904 * 209.99485 * 13 4 3 38 38 H 0.97002 * 120.00473 * 0.02562 * 16 14 13 39 39 H 1.08999 * 109.46951 * 299.99805 * 19 17 16 40 40 H 1.09002 * 109.47050 * 59.99788 * 19 17 16 41 41 H 1.08999 * 109.46906 * 180.02562 * 19 17 16 42 42 H 1.08997 * 109.46969 * 56.64205 * 20 17 16 43 43 H 1.08994 * 109.47331 * 176.64452 * 20 17 16 44 44 H 1.08002 * 119.99997 * 0.02562 * 22 21 20 45 45 H 1.07992 * 120.00718 * 180.02562 * 23 22 21 46 46 H 1.07997 * 119.99943 * 179.97438 * 24 23 22 47 47 H 1.07999 * 119.99921 * 179.97438 * 25 24 23 48 48 H 1.08996 * 109.46952 * 84.29464 * 27 26 21 49 49 H 1.08994 * 109.46797 * 204.29788 * 27 26 21 50 50 H 1.08999 * 109.46815 * 324.29807 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.3530 1.1834 6 1 3.7873 1.8098 2.0757 7 6 5.3994 0.6752 1.2355 8 7 6.2667 0.9492 2.1868 9 14 5.7971 -0.6260 -0.0444 10 1 6.6016 -0.0183 -1.1347 11 1 6.5712 -1.7235 0.5893 12 1 4.5346 -1.1708 -0.6054 13 6 4.2380 1.5383 -1.2642 14 6 4.4893 2.9879 -1.5907 15 8 4.0946 3.8556 -0.8409 16 7 5.1527 3.3200 -2.7158 17 6 5.3965 4.7292 -3.0335 18 1 5.5238 5.2932 -2.1095 19 6 4.2052 5.2898 -3.8130 20 6 6.6635 4.8489 -3.8828 21 6 7.8499 4.3730 -3.0847 22 6 8.3072 3.0767 -3.2321 23 6 9.3957 2.6403 -2.5006 24 6 10.0269 3.5002 -1.6209 25 6 9.5697 4.7962 -1.4735 26 6 8.4844 5.2342 -2.2095 27 6 7.9901 6.6494 -2.0536 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 7.1124 0.4753 2.2235 36 1 3.6492 1.0832 -2.0607 37 1 5.1904 1.0161 -1.1727 38 1 5.4681 2.6261 -3.3158 39 1 4.0778 4.7258 -4.7370 40 1 3.3025 5.2046 -3.2080 41 1 4.3868 6.3382 -4.0497 42 1 6.5594 4.2370 -4.7788 43 1 6.8121 5.8900 -4.1690 44 1 7.8144 2.4051 -3.9196 45 1 9.7532 1.6279 -2.6161 46 1 10.8771 3.1592 -1.0490 47 1 10.0625 5.4677 -0.7861 48 1 7.1714 6.6711 -1.3344 49 1 8.8036 7.2812 -1.6974 50 1 7.6377 7.0192 -3.0165 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350661813.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:27 Heat of formation + Delta-G solvation = -23.380519 kcal Electronic energy + Delta-G solvation = -28052.340865 eV Core-core repulsion = 24464.814474 eV Total energy + Delta-G solvation = -3587.526392 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.02734 -40.16563 -37.97006 -36.74854 -34.60465 -34.01543 -33.24257 -32.83355 -31.56744 -28.77529 -28.22853 -27.55745 -27.01264 -24.13451 -23.21115 -22.71931 -21.88438 -21.36279 -21.24500 -19.07327 -18.10458 -17.39854 -17.27613 -17.01376 -16.35097 -16.13010 -15.96726 -15.67329 -15.45729 -14.99683 -14.72116 -14.67966 -14.46021 -14.26882 -14.07253 -14.00392 -13.82598 -13.47931 -13.26929 -13.18980 -13.01916 -12.82623 -12.80545 -12.66777 -12.47801 -12.30679 -12.15801 -12.03575 -11.92815 -11.78101 -11.63470 -11.51348 -11.38358 -10.85824 -10.54214 -9.93769 -9.68478 -9.44017 -8.86045 -8.18687 -5.54050 0.45046 0.49083 1.23584 1.39864 1.50936 1.91298 2.34569 2.40725 2.83150 3.06790 3.34592 3.77069 3.89796 3.97506 4.07230 4.12760 4.19527 4.24076 4.32116 4.34182 4.35501 4.41074 4.47284 4.50498 4.56887 4.65772 4.71051 4.75006 4.76471 4.81356 4.86107 4.92462 4.93146 4.97592 5.11979 5.17917 5.19730 5.26279 5.33237 5.36471 5.41833 5.56685 5.58889 5.61377 5.69184 5.80132 5.90348 6.15293 6.15787 6.69906 6.94989 7.50678 7.64527 7.98416 9.01940 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.012356 B = 0.004975 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.498257 B = 5627.305147 C = 6911.423000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.136 4.136 3 C 0.155 3.845 4 N -0.592 5.592 5 C -0.249 4.249 6 H 0.025 0.975 7 C -0.030 4.030 8 N -0.951 5.951 9 Si 0.943 3.057 10 H -0.261 1.261 11 H -0.310 1.310 12 H -0.242 1.242 13 C 0.110 3.890 14 C 0.487 3.513 15 O -0.571 6.571 16 N -0.720 5.720 17 C 0.144 3.856 18 H 0.051 0.949 19 C -0.151 4.151 20 C -0.078 4.078 21 C -0.091 4.091 22 C -0.121 4.121 23 C -0.142 4.142 24 C -0.138 4.138 25 C -0.138 4.138 26 C -0.100 4.100 27 C -0.113 4.113 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.038 0.962 33 H 0.028 0.972 34 H 0.059 0.941 35 H 0.261 0.739 36 H 0.112 0.888 37 H 0.067 0.933 38 H 0.406 0.594 39 H 0.079 0.921 40 H 0.032 0.968 41 H 0.083 0.917 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.141 0.859 45 H 0.130 0.870 46 H 0.129 0.871 47 H 0.128 0.872 48 H 0.054 0.946 49 H 0.075 0.925 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.196 5.190 -19.705 20.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.176 4.176 3 C 0.030 3.970 4 N -0.313 5.313 5 C -0.379 4.379 6 H 0.043 0.957 7 C -0.226 4.226 8 N -0.595 5.595 9 Si 0.770 3.230 10 H -0.188 1.188 11 H -0.238 1.238 12 H -0.166 1.166 13 C -0.019 4.019 14 C 0.272 3.728 15 O -0.449 6.449 16 N -0.374 5.374 17 C 0.039 3.961 18 H 0.069 0.931 19 C -0.209 4.209 20 C -0.115 4.115 21 C -0.091 4.091 22 C -0.139 4.139 23 C -0.160 4.160 24 C -0.156 4.156 25 C -0.156 4.156 26 C -0.100 4.100 27 C -0.169 4.169 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.130 0.870 37 H 0.084 0.916 38 H 0.242 0.758 39 H 0.098 0.902 40 H 0.051 0.949 41 H 0.102 0.898 42 H 0.121 0.879 43 H 0.127 0.873 44 H 0.159 0.841 45 H 0.148 0.852 46 H 0.147 0.853 47 H 0.146 0.854 48 H 0.072 0.928 49 H 0.093 0.907 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.004 5.797 -19.067 19.954 hybrid contribution 0.975 -0.863 0.567 1.420 sum 1.979 4.934 -18.500 19.249 Atomic orbital electron populations 1.21656 0.93959 1.02075 1.01962 1.21983 0.96568 0.98002 1.01034 1.20987 0.81377 0.95271 0.99333 1.43803 1.02010 1.84125 1.01350 1.18529 1.03569 1.27579 0.88217 0.95706 1.26082 0.96298 1.00388 0.99801 1.70064 1.08109 1.42779 1.38566 0.85872 0.78839 0.79347 0.78968 1.18823 1.23848 1.16559 1.21492 0.98330 0.91763 0.90337 1.22541 0.76739 0.93458 0.80015 1.90592 1.52234 1.52179 1.49912 1.46150 1.58455 1.08737 1.24075 1.20915 0.95021 0.82215 0.97961 0.93109 1.22090 0.96514 1.02219 1.00121 1.20956 0.88914 1.04401 0.97200 1.19931 0.97129 0.93928 0.98070 1.21305 0.96645 0.95636 1.00295 1.21404 0.97115 1.00114 0.97367 1.21379 1.00947 0.94289 0.98936 1.21295 0.97716 0.96733 0.99874 1.20121 0.95760 0.97555 0.96579 1.20860 1.01323 0.91617 1.03143 0.93216 0.91622 0.91774 0.92289 0.94275 0.95367 0.92210 0.93037 0.87030 0.91582 0.75792 0.90242 0.94856 0.89815 0.87884 0.87291 0.84142 0.85202 0.85332 0.85386 0.92766 0.90650 0.89093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 9.91 71.98 0.71 -2.96 16 2 C -0.14 -4.79 6.24 30.60 0.19 -4.60 16 3 C 0.16 6.42 5.67 86.38 0.49 6.91 16 4 N -0.59 -29.13 1.64 -706.33 -1.16 -30.29 16 5 C -0.25 -15.03 9.95 84.03 0.84 -14.19 16 6 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 7 C -0.03 -1.83 5.31 84.86 0.45 -1.38 16 8 N -0.95 -62.17 13.97 21.65 0.30 -61.86 16 9 Si 0.94 44.97 24.93 68.60 1.71 46.68 16 10 H -0.26 -11.34 6.66 99.48 0.66 -10.68 16 11 H -0.31 -15.17 7.11 99.48 0.71 -14.47 16 12 H -0.24 -10.53 7.11 99.48 0.71 -9.82 16 13 C 0.11 4.60 4.98 85.63 0.43 5.02 16 14 C 0.49 20.25 7.89 87.66 0.69 20.94 16 15 O -0.57 -29.47 16.05 -3.03 -0.05 -29.52 16 16 N -0.72 -21.56 4.63 -442.53 -2.05 -23.60 16 17 C 0.14 3.71 2.60 44.99 0.12 3.83 16 18 H 0.05 1.73 6.79 -2.39 -0.02 1.72 16 19 C -0.15 -3.15 9.51 71.98 0.68 -2.47 16 20 C -0.08 -1.46 4.40 29.85 0.13 -1.33 16 21 C -0.09 -2.31 4.84 -19.87 -0.10 -2.40 16 22 C -0.12 -3.12 9.46 22.27 0.21 -2.91 16 23 C -0.14 -3.99 10.05 22.27 0.22 -3.77 16 24 C -0.14 -4.00 10.05 22.27 0.22 -3.78 16 25 C -0.14 -4.01 9.68 22.27 0.22 -3.79 16 26 C -0.10 -2.76 5.88 -19.86 -0.12 -2.88 16 27 C -0.11 -2.53 9.19 71.24 0.65 -1.88 16 28 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.03 1.27 8.07 -2.39 -0.02 1.25 16 34 H 0.06 2.20 8.04 -2.39 -0.02 2.18 16 35 H 0.26 16.08 8.31 -92.70 -0.77 15.31 16 36 H 0.11 3.62 8.07 -2.39 -0.02 3.60 16 37 H 0.07 2.93 2.85 -2.39 -0.01 2.92 16 38 H 0.41 9.48 8.52 -92.71 -0.79 8.69 16 39 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.10 1.39 8.04 -2.39 -0.02 1.37 16 43 H 0.11 1.59 6.30 -2.39 -0.02 1.57 16 44 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 45 H 0.13 3.18 8.06 -2.91 -0.02 3.16 16 46 H 0.13 3.28 8.06 -2.91 -0.02 3.25 16 47 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 48 H 0.05 1.43 7.75 -2.39 -0.02 1.42 16 49 H 0.07 1.45 8.05 -2.39 -0.02 1.43 16 50 H 0.09 1.54 6.29 -2.39 -0.02 1.52 16 Total: -1.00 -81.78 400.20 4.88 -76.90 By element: Atomic # 1 Polarization: 33.25 SS G_CDS: 0.08 Total: 33.33 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 6.05 Total: -11.63 kcal Atomic # 7 Polarization: -112.86 SS G_CDS: -2.90 Total: -115.76 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -0.05 Total: -29.52 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.71 Total: 46.68 kcal Total: -81.78 4.88 -76.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350661813.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.519 kcal (2) G-P(sol) polarization free energy of solvation -81.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds