Wall clock time and date at job start Tue Mar 31 2020 12:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46884 * 2 1 4 4 H 1.08996 * 109.47019 * 303.44119 * 3 2 1 5 5 C 1.50701 * 109.46832 * 183.44719 * 3 2 1 6 6 O 1.21291 * 119.99935 * 247.36388 * 5 3 2 7 7 N 1.34771 * 120.00304 * 67.08738 * 5 3 2 8 8 C 1.46505 * 120.00276 * 180.02562 * 7 5 3 9 9 C 1.52998 * 109.47224 * 179.97438 * 8 7 5 10 10 C 1.52994 * 109.47322 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.47515 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00127 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00293 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00157 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 119.99748 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.47383 * 90.00205 * 15 13 11 17 17 H 1.48499 * 109.46923 * 209.99951 * 15 13 11 18 18 H 1.48498 * 109.47368 * 329.99648 * 15 13 11 19 19 N 1.46898 * 109.47133 * 63.44735 * 3 2 1 20 20 C 1.46903 * 110.99687 * 184.40116 * 19 3 2 21 21 C 1.46900 * 111.00070 * 60.45013 * 19 3 2 22 22 C 1.50703 * 109.46991 * 195.73104 * 21 19 3 23 23 C 1.38240 * 119.99898 * 269.72755 * 22 21 19 24 24 C 1.38237 * 119.99750 * 179.76311 * 23 22 21 25 25 C 1.38243 * 119.99808 * 0.51099 * 24 23 22 26 26 C 1.38239 * 120.00028 * 359.74031 * 25 24 23 27 27 C 1.38231 * 119.99970 * 0.02562 * 26 25 24 28 28 H 1.08998 * 109.46943 * 64.57486 * 1 2 3 29 29 H 1.08998 * 109.47158 * 184.57845 * 1 2 3 30 30 H 1.09007 * 109.46843 * 304.57781 * 1 2 3 31 31 H 1.08996 * 109.47296 * 239.99895 * 2 1 3 32 32 H 1.08999 * 109.46987 * 119.99451 * 2 1 3 33 33 H 0.97007 * 120.00120 * 359.97438 * 7 5 3 34 34 H 1.09007 * 109.46216 * 299.99555 * 8 7 5 35 35 H 1.08996 * 109.47247 * 59.99333 * 8 7 5 36 36 H 1.09002 * 109.47262 * 299.99786 * 9 8 7 37 37 H 1.09008 * 109.47055 * 59.99480 * 9 8 7 38 38 H 1.09010 * 109.47038 * 300.00036 * 10 9 8 39 39 H 1.09000 * 109.47300 * 59.99687 * 10 9 8 40 40 H 0.96994 * 119.99816 * 179.97438 * 14 13 11 41 41 H 1.09005 * 109.46705 * 60.00196 * 20 19 3 42 42 H 1.08999 * 109.47201 * 179.97438 * 20 19 3 43 43 H 1.08997 * 109.47502 * 300.00239 * 20 19 3 44 44 H 1.08998 * 109.47210 * 315.72919 * 21 19 3 45 45 H 1.09003 * 109.47323 * 75.73532 * 21 19 3 46 46 H 1.07996 * 119.99797 * 359.97438 * 23 22 21 47 47 H 1.07997 * 119.99847 * 180.22575 * 24 23 22 48 48 H 1.08003 * 119.99550 * 179.72412 * 25 24 23 49 49 H 1.08000 * 119.99697 * 179.97438 * 26 25 24 50 50 H 1.08001 * 119.99793 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6272 1.9738 -0.8575 5 6 3.5446 1.4434 -0.0854 6 8 4.2052 1.8285 0.8560 7 7 4.1562 1.0110 -1.2058 8 6 5.6189 1.0113 -1.2887 9 6 6.0525 0.4763 -2.6549 10 6 7.5800 0.4772 -2.7417 11 6 8.0071 -0.0492 -4.0876 12 1 7.2634 -0.3544 -4.8088 13 6 9.3473 -0.1423 -4.3978 14 7 9.7200 -0.6022 -5.5723 15 14 10.6336 0.3848 -3.1501 16 1 11.0042 -0.7757 -2.3009 17 1 11.8384 0.8825 -3.8614 18 1 10.0808 1.4666 -2.2961 19 7 1.6195 2.1106 1.2389 20 6 2.0018 3.5289 1.2280 21 6 2.1674 1.4267 2.4179 22 6 1.4270 1.8788 3.6501 23 6 1.8798 2.9707 4.3668 24 6 1.1978 3.3884 5.4944 25 6 0.0690 2.7078 5.9112 26 6 -0.3807 1.6127 5.1974 27 6 0.2985 1.1980 4.0671 28 1 -0.3633 0.4412 -0.9281 29 1 -0.3633 -1.0244 0.0820 30 1 -0.3633 0.5833 0.8462 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.6280 0.6989 -1.9572 34 1 5.9897 2.0286 -1.1621 35 1 6.0274 0.3753 -0.5034 36 1 5.6817 -0.5409 -2.7811 37 1 5.6439 1.1120 -3.4405 38 1 7.9505 1.4946 -2.6156 39 1 7.9889 -0.1583 -1.9561 40 1 10.6628 -0.6673 -5.7906 41 1 1.5258 4.0271 0.3834 42 1 1.6783 3.9996 2.1564 43 1 3.0847 3.6127 1.1360 44 1 2.0518 0.3493 2.2994 45 1 3.2251 1.6696 2.5200 46 1 2.7643 3.4995 4.0439 47 1 1.5494 4.2437 6.0522 48 1 -0.4612 3.0314 6.7947 49 1 -1.2623 1.0807 5.5233 50 1 -0.0527 0.3422 3.5097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354268170.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:21 Heat of formation + Delta-G solvation = -18.440158 kcal Electronic energy + Delta-G solvation = -26550.523292 eV Core-core repulsion = 22963.211130 eV Total energy + Delta-G solvation = -3587.312162 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.68391 -39.28857 -37.11169 -35.48746 -33.90376 -33.09519 -31.60463 -31.44920 -31.03750 -28.21464 -27.23909 -26.51703 -23.78243 -22.94530 -22.65596 -21.92375 -21.05158 -20.62752 -19.58602 -17.46587 -16.99486 -16.65868 -16.48489 -15.75629 -15.43826 -15.35793 -15.21078 -14.80329 -14.35742 -14.19472 -14.05557 -13.69782 -13.58076 -13.28478 -12.82666 -12.77763 -12.71120 -12.49998 -12.20489 -12.08729 -11.97023 -11.94423 -11.60340 -11.28086 -11.16785 -11.13146 -11.01046 -10.90530 -10.83400 -10.37701 -10.08373 -9.89998 -9.74979 -9.26813 -9.07850 -8.95449 -8.92099 -8.58812 -8.22161 -6.09511 -4.08396 1.16899 1.23640 2.56852 3.26555 3.28448 3.36163 3.39959 3.46923 3.92209 4.41226 4.50869 4.63777 4.68968 4.76391 4.80425 4.84461 4.93821 5.04631 5.18188 5.24384 5.25496 5.34601 5.37354 5.48334 5.50874 5.51935 5.59350 5.63487 5.74210 5.76801 5.84379 5.88051 5.90250 5.95545 5.97625 6.15057 6.28052 6.31824 6.33002 6.38944 6.48487 6.62976 6.72463 6.74388 6.82437 6.85336 7.18096 7.31593 7.54572 7.72888 8.22760 8.46850 8.94144 9.52624 11.03659 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.022048 B = 0.002271 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.632168 B =12327.841606 C =13107.968026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C 0.064 3.936 4 H 0.108 0.892 5 C 0.481 3.519 6 O -0.544 6.544 7 N -0.722 5.722 8 C 0.113 3.887 9 C -0.113 4.113 10 C -0.011 4.011 11 C -0.523 4.523 12 H 0.072 0.928 13 C 0.066 3.934 14 N -0.902 5.902 15 Si 0.880 3.120 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.265 1.265 19 N -0.502 5.502 20 C 0.008 3.992 21 C 0.068 3.932 22 C -0.067 4.067 23 C -0.112 4.112 24 C -0.122 4.122 25 C -0.126 4.126 26 C -0.123 4.123 27 C -0.103 4.103 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.400 0.600 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.018 0.982 39 H 0.014 0.986 40 H 0.264 0.736 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.049 0.951 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.120 0.880 47 H 0.119 0.881 48 H 0.117 0.883 49 H 0.119 0.881 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.197 5.291 18.847 30.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C -0.049 4.049 4 H 0.126 0.874 5 C 0.266 3.734 6 O -0.423 6.423 7 N -0.372 5.372 8 C -0.010 4.010 9 C -0.151 4.151 10 C -0.049 4.049 11 C -0.561 4.561 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.541 5.541 15 Si 0.707 3.293 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.190 1.190 19 N -0.224 5.224 20 C -0.140 4.140 21 C -0.059 4.059 22 C -0.068 4.068 23 C -0.131 4.131 24 C -0.140 4.140 25 C -0.144 4.144 26 C -0.141 4.141 27 C -0.121 4.121 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.234 0.766 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.036 0.964 39 H 0.032 0.968 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.098 0.902 45 H 0.103 0.897 46 H 0.138 0.862 47 H 0.137 0.863 48 H 0.135 0.865 49 H 0.137 0.863 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -23.061 5.511 19.424 30.651 hybrid contribution 1.486 0.168 0.041 1.496 sum -21.575 5.678 19.465 29.608 Atomic orbital electron populations 1.21674 0.94147 1.01474 1.02802 1.21611 0.97639 0.93155 1.02887 1.22001 0.89599 0.97895 0.95360 0.87416 1.22001 0.91511 0.77204 0.82703 1.90606 1.67211 1.47767 1.36680 1.46355 1.08727 1.64891 1.17253 1.21651 0.78194 1.01476 0.99681 1.21702 0.99679 1.00434 0.93280 1.19498 0.90580 0.96941 0.97848 1.21086 0.92982 1.42899 0.99087 0.91000 1.25034 0.98659 0.94587 0.95220 1.69909 1.16532 1.46458 1.21186 0.86775 0.81171 0.79598 0.81742 1.20238 1.21327 1.18963 1.62450 1.57018 1.02740 1.00236 1.22593 1.00610 0.88253 1.02514 1.21496 0.98747 0.98678 0.86955 1.19848 0.95557 0.95410 0.95956 1.21131 0.99967 0.96628 0.95377 1.21121 0.95963 0.99990 0.96976 1.21114 0.97046 0.96288 0.99973 1.21129 0.99942 0.97247 0.95819 1.21037 0.94840 0.99922 0.96350 0.92785 0.92956 0.91133 0.90918 0.91134 0.76630 0.91914 0.91880 0.92114 0.92113 0.96383 0.96806 0.92670 0.91894 0.91078 0.93218 0.90174 0.89705 0.86248 0.86341 0.86457 0.86339 0.86202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.85 37.16 0.37 -0.67 16 2 C -0.11 -0.95 5.19 -26.73 -0.14 -1.09 16 3 C 0.06 0.62 2.18 -68.86 -0.15 0.47 16 4 H 0.11 0.92 8.13 -51.93 -0.42 0.49 16 5 C 0.48 6.21 6.42 -10.99 -0.07 6.14 16 6 O -0.54 -8.77 11.80 5.55 0.07 -8.70 16 7 N -0.72 -9.20 5.54 -60.29 -0.33 -9.53 16 8 C 0.11 1.80 5.67 -4.04 -0.02 1.78 16 9 C -0.11 -2.06 5.27 -26.73 -0.14 -2.20 16 10 C -0.01 -0.25 4.04 -27.89 -0.11 -0.36 16 11 C -0.52 -14.61 9.66 -34.44 -0.33 -14.94 16 12 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 13 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 14 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 15 Si 0.88 21.65 27.47 -169.99 -4.67 16.99 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 19 N -0.50 -5.16 4.01 -237.72 -0.95 -6.11 16 20 C 0.01 0.09 9.04 60.07 0.54 0.63 16 21 C 0.07 0.74 4.25 -4.97 -0.02 0.72 16 22 C -0.07 -0.70 5.04 -104.62 -0.53 -1.22 16 23 C -0.11 -1.14 8.12 -39.58 -0.32 -1.46 16 24 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 25 C -0.13 -1.05 10.05 -39.58 -0.40 -1.45 16 26 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 27 C -0.10 -0.96 9.70 -39.58 -0.38 -1.34 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.57 7.58 -51.92 -0.39 0.17 16 31 H 0.07 0.55 8.02 -51.93 -0.42 0.13 16 32 H 0.07 0.64 5.95 -51.93 -0.31 0.33 16 33 H 0.40 4.10 8.36 -40.82 -0.34 3.76 16 34 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 38 H 0.02 0.42 7.20 -51.92 -0.37 0.05 16 39 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.73 6.05 -51.93 -0.31 0.41 16 43 H 0.05 0.63 6.00 -51.93 -0.31 0.32 16 44 H 0.08 0.84 5.54 -51.93 -0.29 0.56 16 45 H 0.09 1.15 5.56 -51.93 -0.29 0.87 16 46 H 0.12 1.19 7.90 -52.49 -0.41 0.77 16 47 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 48 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 49 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 50 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 392.97 15.07 5.92 5.92 Total: -1.00 -31.91 392.97 -10.30 -42.21 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -8.50 Total: 2.10 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -2.60 Total: -16.08 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: -0.51 Total: -42.44 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.07 Total: -8.70 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.91 -10.30 -42.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354268170.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.771 kcal (2) G-P(sol) polarization free energy of solvation -31.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds