Wall clock time and date at job start Tue Mar 31 2020 12:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46884 * 2 1 4 4 H 1.08996 * 109.47019 * 303.44119 * 3 2 1 5 5 C 1.50701 * 109.46832 * 183.44719 * 3 2 1 6 6 O 1.21291 * 119.99935 * 247.36388 * 5 3 2 7 7 N 1.34771 * 120.00304 * 67.08738 * 5 3 2 8 8 C 1.46505 * 120.00276 * 180.02562 * 7 5 3 9 9 C 1.52998 * 109.47224 * 179.97438 * 8 7 5 10 10 C 1.52994 * 109.47322 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.47515 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00127 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00293 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00157 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 119.99748 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.47383 * 90.00205 * 15 13 11 17 17 H 1.48499 * 109.46923 * 209.99951 * 15 13 11 18 18 H 1.48498 * 109.47368 * 329.99648 * 15 13 11 19 19 N 1.46898 * 109.47133 * 63.44735 * 3 2 1 20 20 C 1.46903 * 110.99687 * 184.40116 * 19 3 2 21 21 C 1.46900 * 111.00070 * 60.45013 * 19 3 2 22 22 C 1.50703 * 109.46991 * 195.73104 * 21 19 3 23 23 C 1.38240 * 119.99898 * 269.72755 * 22 21 19 24 24 C 1.38237 * 119.99750 * 179.76311 * 23 22 21 25 25 C 1.38243 * 119.99808 * 0.51099 * 24 23 22 26 26 C 1.38239 * 120.00028 * 359.74031 * 25 24 23 27 27 C 1.38231 * 119.99970 * 0.02562 * 26 25 24 28 28 H 1.08998 * 109.46943 * 64.57486 * 1 2 3 29 29 H 1.08998 * 109.47158 * 184.57845 * 1 2 3 30 30 H 1.09007 * 109.46843 * 304.57781 * 1 2 3 31 31 H 1.08996 * 109.47296 * 239.99895 * 2 1 3 32 32 H 1.08999 * 109.46987 * 119.99451 * 2 1 3 33 33 H 0.97007 * 120.00120 * 359.97438 * 7 5 3 34 34 H 1.09007 * 109.46216 * 299.99555 * 8 7 5 35 35 H 1.08996 * 109.47247 * 59.99333 * 8 7 5 36 36 H 1.09002 * 109.47262 * 299.99786 * 9 8 7 37 37 H 1.09008 * 109.47055 * 59.99480 * 9 8 7 38 38 H 1.09010 * 109.47038 * 300.00036 * 10 9 8 39 39 H 1.09000 * 109.47300 * 59.99687 * 10 9 8 40 40 H 0.96994 * 119.99816 * 179.97438 * 14 13 11 41 41 H 1.09005 * 109.46705 * 60.00196 * 20 19 3 42 42 H 1.08999 * 109.47201 * 179.97438 * 20 19 3 43 43 H 1.08997 * 109.47502 * 300.00239 * 20 19 3 44 44 H 1.08998 * 109.47210 * 315.72919 * 21 19 3 45 45 H 1.09003 * 109.47323 * 75.73532 * 21 19 3 46 46 H 1.07996 * 119.99797 * 359.97438 * 23 22 21 47 47 H 1.07997 * 119.99847 * 180.22575 * 24 23 22 48 48 H 1.08003 * 119.99550 * 179.72412 * 25 24 23 49 49 H 1.08000 * 119.99697 * 179.97438 * 26 25 24 50 50 H 1.08001 * 119.99793 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6272 1.9738 -0.8575 5 6 3.5446 1.4434 -0.0854 6 8 4.2052 1.8285 0.8560 7 7 4.1562 1.0110 -1.2058 8 6 5.6189 1.0113 -1.2887 9 6 6.0525 0.4763 -2.6549 10 6 7.5800 0.4772 -2.7417 11 6 8.0071 -0.0492 -4.0876 12 1 7.2634 -0.3544 -4.8088 13 6 9.3473 -0.1423 -4.3978 14 7 9.7200 -0.6022 -5.5723 15 14 10.6336 0.3848 -3.1501 16 1 11.0042 -0.7757 -2.3009 17 1 11.8384 0.8825 -3.8614 18 1 10.0808 1.4666 -2.2961 19 7 1.6195 2.1106 1.2389 20 6 2.0018 3.5289 1.2280 21 6 2.1674 1.4267 2.4179 22 6 1.4270 1.8788 3.6501 23 6 1.8798 2.9707 4.3668 24 6 1.1978 3.3884 5.4944 25 6 0.0690 2.7078 5.9112 26 6 -0.3807 1.6127 5.1974 27 6 0.2985 1.1980 4.0671 28 1 -0.3633 0.4412 -0.9281 29 1 -0.3633 -1.0244 0.0820 30 1 -0.3633 0.5833 0.8462 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.6280 0.6989 -1.9572 34 1 5.9897 2.0286 -1.1621 35 1 6.0274 0.3753 -0.5034 36 1 5.6817 -0.5409 -2.7811 37 1 5.6439 1.1120 -3.4405 38 1 7.9505 1.4946 -2.6156 39 1 7.9889 -0.1583 -1.9561 40 1 10.6628 -0.6673 -5.7906 41 1 1.5258 4.0271 0.3834 42 1 1.6783 3.9996 2.1564 43 1 3.0847 3.6127 1.1360 44 1 2.0518 0.3493 2.2994 45 1 3.2251 1.6696 2.5200 46 1 2.7643 3.4995 4.0439 47 1 1.5494 4.2437 6.0522 48 1 -0.4612 3.0314 6.7947 49 1 -1.2623 1.0807 5.5233 50 1 -0.0527 0.3422 3.5097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354268170.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:20 Heat of formation + Delta-G solvation = -37.776515 kcal Electronic energy + Delta-G solvation = -26551.361780 eV Core-core repulsion = 22963.211130 eV Total energy + Delta-G solvation = -3588.150649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.63679 -40.04756 -38.07162 -36.80911 -35.30080 -34.33715 -33.14060 -32.32638 -31.70807 -29.53304 -28.12332 -27.68734 -24.94086 -24.12942 -23.33672 -22.76914 -22.25367 -21.87066 -20.66408 -18.99822 -18.30638 -17.60769 -17.38098 -16.80379 -16.56160 -16.28406 -16.19307 -16.02362 -15.57773 -15.38056 -15.15910 -14.81292 -14.51793 -14.23541 -13.99387 -13.88926 -13.80142 -13.48672 -13.43856 -13.16558 -12.91625 -12.79085 -12.74638 -12.70933 -12.43309 -11.96688 -11.92647 -11.82997 -11.78938 -11.71423 -11.61044 -11.54513 -11.35548 -11.20117 -10.78332 -10.08312 -9.76311 -9.66731 -9.14216 -8.31343 -6.35152 0.47369 0.55479 1.34429 1.36187 1.47652 1.55020 2.20624 2.33987 2.72809 3.04169 3.15415 3.68689 3.83368 3.97836 4.01296 4.08169 4.10800 4.17087 4.21414 4.26293 4.35416 4.47261 4.49500 4.54709 4.65955 4.68909 4.70322 4.78680 4.85010 4.85532 4.94065 4.98223 5.00716 5.03238 5.15919 5.21413 5.21951 5.28773 5.40010 5.49693 5.52792 5.57259 5.61323 5.63028 5.66898 5.75000 5.89576 5.97812 6.17785 6.25370 6.54820 6.72922 7.22026 7.29621 8.84927 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.022048 B = 0.002271 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.632168 B =12327.841606 C =13107.968026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 C 0.070 3.930 4 H 0.128 0.872 5 C 0.479 3.521 6 O -0.577 6.577 7 N -0.714 5.714 8 C 0.128 3.872 9 C -0.100 4.100 10 C -0.012 4.012 11 C -0.530 4.530 12 H 0.038 0.962 13 C 0.004 3.996 14 N -0.949 5.949 15 Si 0.947 3.053 16 H -0.267 1.267 17 H -0.284 1.284 18 H -0.250 1.250 19 N -0.495 5.495 20 C 0.013 3.987 21 C 0.077 3.923 22 C -0.082 4.082 23 C -0.129 4.129 24 C -0.129 4.129 25 C -0.129 4.129 26 C -0.126 4.126 27 C -0.111 4.111 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.414 0.586 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.266 0.734 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.025 0.975 44 H 0.083 0.917 45 H 0.055 0.945 46 H 0.110 0.890 47 H 0.134 0.866 48 H 0.141 0.859 49 H 0.142 0.858 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.068 5.590 20.505 32.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.150 4.150 3 C -0.043 4.043 4 H 0.146 0.854 5 C 0.266 3.734 6 O -0.458 6.458 7 N -0.366 5.366 8 C 0.004 3.996 9 C -0.137 4.137 10 C -0.050 4.050 11 C -0.568 4.568 12 H 0.057 0.943 13 C -0.193 4.193 14 N -0.589 5.589 15 Si 0.770 3.230 16 H -0.193 1.193 17 H -0.210 1.210 18 H -0.173 1.173 19 N -0.216 5.216 20 C -0.135 4.135 21 C -0.050 4.050 22 C -0.083 4.083 23 C -0.147 4.147 24 C -0.147 4.147 25 C -0.147 4.147 26 C -0.144 4.144 27 C -0.129 4.129 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.251 0.749 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.037 0.963 39 H 0.036 0.964 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.043 0.957 44 H 0.101 0.899 45 H 0.073 0.927 46 H 0.128 0.872 47 H 0.152 0.848 48 H 0.159 0.841 49 H 0.160 0.840 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -24.971 5.806 21.078 33.190 hybrid contribution 1.998 0.060 -0.496 2.060 sum -22.973 5.866 20.582 31.397 Atomic orbital electron populations 1.21618 0.92956 1.02004 1.02868 1.21626 0.98523 0.91823 1.02999 1.22152 0.87059 0.99271 0.95796 0.85442 1.22653 0.92812 0.76101 0.81870 1.90619 1.68240 1.49054 1.37842 1.46198 1.07413 1.64983 1.18017 1.21245 0.80202 1.00437 0.97751 1.21473 0.96413 1.01076 0.94782 1.19463 0.94021 0.96453 0.95062 1.21454 0.92500 1.42319 1.00549 0.94317 1.25982 1.01245 0.94802 0.97236 1.70053 1.17196 1.48256 1.23420 0.85708 0.78164 0.79816 0.79273 1.19255 1.20959 1.17343 1.62516 1.56287 1.02535 1.00288 1.22542 0.99066 0.88712 1.03182 1.21334 0.97130 0.98829 0.87730 1.19864 0.96340 0.96066 0.95986 1.21179 1.00195 0.97052 0.96308 1.21363 0.96159 1.00569 0.96628 1.21450 0.96713 0.95955 1.00565 1.21450 1.00421 0.97245 0.95248 1.21209 0.94570 1.00184 0.96935 0.91947 0.92065 0.91944 0.89828 0.92039 0.74950 0.92895 0.92745 0.91623 0.91736 0.96319 0.96383 0.92495 0.90475 0.91006 0.95661 0.89909 0.92702 0.87171 0.84820 0.84128 0.84041 0.85148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.85 71.98 0.71 -0.92 16 2 C -0.11 -1.62 5.19 30.60 0.16 -1.47 16 3 C 0.07 1.25 2.18 44.17 0.10 1.35 16 4 H 0.13 1.83 8.13 -2.39 -0.02 1.81 16 5 C 0.48 12.01 6.42 87.66 0.56 12.57 16 6 O -0.58 -18.82 11.80 -3.06 -0.04 -18.86 16 7 N -0.71 -17.27 5.54 -463.04 -2.56 -19.83 16 8 C 0.13 3.96 5.67 86.38 0.49 4.45 16 9 C -0.10 -3.53 5.27 30.59 0.16 -3.37 16 10 C -0.01 -0.55 4.04 29.84 0.12 -0.42 16 11 C -0.53 -29.98 9.66 25.60 0.25 -29.73 16 12 H 0.04 2.37 7.99 -2.91 -0.02 2.35 16 13 C 0.00 0.25 5.47 84.66 0.46 0.72 16 14 N -0.95 -59.09 13.96 21.45 0.30 -58.79 16 15 Si 0.95 44.43 27.47 68.60 1.88 46.32 16 16 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 17 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 18 H -0.25 -11.01 6.54 99.48 0.65 -10.36 16 19 N -0.49 -9.76 4.01 -906.03 -3.63 -13.39 16 20 C 0.01 0.27 9.04 127.69 1.15 1.43 16 21 C 0.08 1.69 4.25 85.56 0.36 2.05 16 22 C -0.08 -1.68 5.04 -19.86 -0.10 -1.78 16 23 C -0.13 -2.62 8.12 22.27 0.18 -2.43 16 24 C -0.13 -2.17 10.05 22.27 0.22 -1.94 16 25 C -0.13 -1.88 10.05 22.27 0.22 -1.65 16 26 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 27 C -0.11 -1.91 9.70 22.27 0.22 -1.70 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.86 7.58 -2.38 -0.02 0.85 16 31 H 0.08 1.05 8.02 -2.39 -0.02 1.03 16 32 H 0.06 1.02 5.95 -2.39 -0.01 1.01 16 33 H 0.41 7.63 8.36 -92.70 -0.78 6.86 16 34 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 38 H 0.02 0.84 7.20 -2.38 -0.02 0.83 16 39 H 0.02 0.80 7.57 -2.39 -0.02 0.79 16 40 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 41 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.07 1.47 6.05 -2.39 -0.01 1.46 16 43 H 0.02 0.66 6.00 -2.39 -0.01 0.64 16 44 H 0.08 1.73 5.54 -2.39 -0.01 1.72 16 45 H 0.05 1.57 5.56 -2.39 -0.01 1.55 16 46 H 0.11 2.34 7.90 -2.91 -0.02 2.31 16 47 H 0.13 1.72 8.06 -2.91 -0.02 1.70 16 48 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 49 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 50 H 0.13 1.89 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -69.96 392.97 1.53 -68.43 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.08 Total: 20.60 kcal Atomic # 6 Polarization: -29.97 SS G_CDS: 5.50 Total: -24.48 kcal Atomic # 7 Polarization: -86.11 SS G_CDS: -5.90 Total: -92.01 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.04 Total: -18.86 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.88 Total: 46.32 kcal Total: -69.96 1.53 -68.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354268170.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.657 kcal (2) G-P(sol) polarization free energy of solvation -69.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds