Wall clock time and date at job start Tue Mar 31 2020 12:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47117 * 2 1 4 4 N 1.46904 * 109.47022 * 181.67682 * 3 2 1 5 5 C 1.46903 * 111.00208 * 71.53717 * 4 3 2 6 6 C 1.52998 * 109.47030 * 69.48635 * 5 4 3 7 7 C 1.46901 * 111.00231 * 195.49050 * 4 3 2 8 8 C 1.52991 * 109.47536 * 159.94694 * 7 4 3 9 9 H 1.09002 * 109.47166 * 299.76114 * 8 7 4 10 10 C 1.52999 * 109.47422 * 179.75518 * 8 7 4 11 11 N 1.46506 * 109.47070 * 59.75776 * 8 7 4 12 12 C 1.34773 * 119.99935 * 221.46897 * 11 8 7 13 13 O 1.21588 * 120.00267 * 359.97438 * 12 11 8 14 14 C 1.47638 * 119.99982 * 179.97438 * 12 11 8 15 15 C 1.40017 * 119.89503 * 359.72179 * 14 12 11 16 16 C 1.36314 * 120.10587 * 179.75558 * 15 14 12 17 17 C 1.40882 * 119.89566 * 0.52237 * 16 15 14 18 18 C 1.41104 * 120.10776 * 179.71448 * 17 16 15 19 19 H 1.08007 * 119.99906 * 156.91990 * 18 17 16 20 20 C 1.40229 * 120.00021 * 336.92391 * 18 17 16 21 21 N 1.30650 * 119.99747 * 333.16251 * 20 18 17 22 22 Si 1.86791 * 120.00238 * 153.16534 * 20 18 17 23 23 H 1.48501 * 109.47322 * 94.98427 * 22 20 18 24 24 H 1.48500 * 109.47444 * 214.98619 * 22 20 18 25 25 H 1.48505 * 109.47292 * 334.98629 * 22 20 18 26 26 C 1.40894 * 119.79144 * 359.73130 * 17 16 15 27 27 C 1.36319 * 119.88808 * 0.02562 * 26 17 16 28 28 H 1.08996 * 109.46922 * 300.00060 * 1 2 3 29 29 H 1.08997 * 109.47190 * 59.99828 * 1 2 3 30 30 H 1.09001 * 109.47030 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47395 * 240.00172 * 2 1 3 32 32 H 1.08997 * 109.47190 * 120.00172 * 2 1 3 33 33 H 1.08998 * 109.47091 * 61.67719 * 3 2 1 34 34 H 1.08998 * 109.47364 * 301.67368 * 3 2 1 35 35 H 1.08995 * 109.47206 * 189.49051 * 5 4 3 36 36 H 1.08999 * 109.46829 * 309.48748 * 5 4 3 37 37 H 1.08999 * 109.47006 * 186.81254 * 6 5 4 38 38 H 1.09002 * 109.47119 * 306.81345 * 6 5 4 39 39 H 1.09001 * 109.47069 * 66.81543 * 6 5 4 40 40 H 1.09008 * 109.46986 * 39.95015 * 7 4 3 41 41 H 1.09000 * 109.47003 * 279.95369 * 7 4 3 42 42 H 1.09009 * 109.46819 * 60.00284 * 10 8 7 43 43 H 1.09002 * 109.47437 * 300.00430 * 10 8 7 44 44 H 1.09003 * 109.47409 * 179.97438 * 10 8 7 45 45 H 0.97001 * 119.99846 * 41.46503 * 11 8 7 46 46 H 1.08003 * 119.94356 * 0.02562 * 15 14 12 47 47 H 1.08005 * 120.05295 * 180.23078 * 16 15 14 48 48 H 0.96995 * 120.00032 * 180.02562 * 21 20 18 49 49 H 1.07997 * 120.05290 * 179.97438 * 26 17 16 50 50 H 1.08007 * 119.94129 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5085 1.4427 -0.0405 5 6 3.9988 1.0211 -1.3596 6 6 3.6810 2.1046 -2.3920 7 6 4.0451 2.7607 0.3240 8 6 5.5053 2.6151 0.7565 9 1 5.5642 1.9515 1.6193 10 6 6.0660 3.9887 1.1303 11 7 6.2877 2.0521 -0.3468 12 6 7.2199 1.1106 -0.1002 13 8 7.4121 0.7288 1.0381 14 6 8.0080 0.5429 -1.2121 15 6 7.7809 0.9800 -2.5228 16 6 8.5094 0.4624 -3.5521 17 6 9.4845 -0.5219 -3.2969 18 6 10.2370 -1.0652 -4.3597 19 1 11.2000 -1.5140 -4.1654 20 6 9.7346 -1.0222 -5.6682 21 7 8.4445 -0.9883 -5.8718 22 14 10.9097 -1.0137 -7.1201 23 1 11.0952 -2.4014 -7.6150 24 1 10.3481 -0.1716 -8.2067 25 1 12.2204 -0.4612 -6.6930 26 6 9.7057 -0.9624 -1.9770 27 6 8.9757 -0.4353 -0.9535 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.7014 1.9476 0.9046 34 1 1.6524 1.9649 -0.8746 35 1 5.0769 0.8674 -1.3143 36 1 3.5109 0.0901 -1.6480 37 1 3.9344 1.7426 -3.3884 38 1 2.6183 2.3442 -2.3518 39 1 4.2637 2.9990 -2.1712 40 1 3.4622 3.1755 1.1464 41 1 3.9856 3.4277 -0.5361 42 1 5.4839 4.4075 1.9513 43 1 6.0070 4.6523 0.2676 44 1 7.1062 3.8849 1.4389 45 1 6.1346 2.3570 -1.2549 46 1 7.0303 1.7317 -2.7180 47 1 8.3361 0.8028 -4.5623 48 1 8.0969 -0.9590 -6.7768 49 1 10.4519 -1.7171 -1.7766 50 1 9.1443 -0.7727 0.0585 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358349881.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:38 Heat of formation + Delta-G solvation = -38.507490 kcal Electronic energy + Delta-G solvation = -27438.516832 eV Core-core repulsion = 23850.334485 eV Total energy + Delta-G solvation = -3588.182347 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.14867 -39.58765 -38.71529 -36.30870 -35.68307 -34.03149 -33.05575 -31.55356 -31.26839 -30.43441 -27.70474 -27.54813 -25.72966 -24.26093 -23.30013 -22.83415 -21.76158 -21.29063 -20.79820 -19.35602 -18.32142 -17.57834 -17.14137 -16.98374 -16.53008 -15.79298 -15.72686 -15.60444 -15.33460 -15.08529 -14.83426 -14.52620 -14.41693 -14.02213 -13.93914 -13.82646 -13.57599 -13.39634 -13.19446 -12.97760 -12.93039 -12.85714 -12.71416 -12.61756 -12.52410 -12.33000 -12.26762 -11.95619 -11.94851 -11.80635 -11.65697 -11.35659 -11.32009 -11.03454 -10.60937 -9.84015 -9.56202 -9.43396 -9.06034 -8.86732 -6.44686 0.49412 1.16043 1.37028 1.42390 1.55145 2.13646 2.19660 2.46723 2.78155 2.96184 3.70110 3.88794 3.97922 4.04439 4.17898 4.27377 4.29530 4.34500 4.37494 4.41191 4.45502 4.46105 4.54442 4.63955 4.69304 4.71344 4.75346 4.83750 4.90826 4.92122 5.02894 5.03700 5.09465 5.14222 5.18656 5.20386 5.28781 5.30608 5.31923 5.34710 5.47757 5.58429 5.73508 5.84224 5.94254 6.00667 6.18713 6.23265 6.26533 6.52895 6.75794 6.77244 6.90594 7.54515 8.10520 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.013920 B = 0.003324 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.043252 B = 8421.219219 C = 9448.039707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C 0.054 3.946 4 N -0.549 5.549 5 C 0.030 3.970 6 C -0.184 4.184 7 C 0.047 3.953 8 C 0.141 3.859 9 H 0.070 0.930 10 C -0.154 4.154 11 N -0.712 5.712 12 C 0.574 3.426 13 O -0.607 6.607 14 C -0.297 4.297 15 C -0.046 4.046 16 C -0.203 4.203 17 C 0.105 3.895 18 C -0.477 4.477 19 H 0.085 0.915 20 C 0.047 3.953 21 N -0.785 5.785 22 Si 0.980 3.020 23 H -0.260 1.260 24 H -0.260 1.260 25 H -0.258 1.258 26 C -0.258 4.258 27 C -0.030 4.030 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.045 0.955 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.103 0.897 41 H 0.062 0.938 42 H 0.088 0.912 43 H 0.070 0.930 44 H 0.039 0.961 45 H 0.402 0.598 46 H 0.118 0.882 47 H 0.106 0.894 48 H 0.299 0.701 49 H 0.101 0.899 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.379 9.385 2.804 16.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C -0.073 4.073 4 N -0.272 5.272 5 C -0.098 4.098 6 C -0.243 4.243 7 C -0.082 4.082 8 C 0.036 3.964 9 H 0.088 0.912 10 C -0.212 4.212 11 N -0.364 5.364 12 C 0.368 3.632 13 O -0.491 6.491 14 C -0.301 4.301 15 C -0.065 4.065 16 C -0.222 4.222 17 C 0.102 3.898 18 C -0.504 4.504 19 H 0.103 0.897 20 C -0.175 4.175 21 N -0.407 5.407 22 Si 0.800 3.200 23 H -0.185 1.185 24 H -0.184 1.184 25 H -0.182 1.182 26 C -0.277 4.277 27 C -0.050 4.050 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.121 0.879 41 H 0.079 0.921 42 H 0.107 0.893 43 H 0.089 0.911 44 H 0.058 0.942 45 H 0.240 0.760 46 H 0.136 0.864 47 H 0.124 0.876 48 H 0.110 0.890 49 H 0.119 0.881 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.324 8.794 3.791 16.409 hybrid contribution 0.344 0.111 -1.523 1.566 sum -12.980 8.905 2.268 15.904 Atomic orbital electron populations 1.21684 0.94159 1.02057 1.02258 1.21504 0.96405 0.96585 1.01434 1.22238 0.86378 0.97170 1.01497 1.62077 1.08911 1.27889 1.28357 1.22505 1.01906 0.98012 0.87420 1.22349 1.02238 0.99854 0.99864 1.22556 0.93818 0.90035 1.01749 1.21074 0.90132 0.95127 0.90094 0.91204 1.22095 1.00832 0.95520 1.02800 1.45977 1.38149 1.41089 1.11190 1.18311 0.78887 0.78219 0.87802 1.90603 1.70117 1.63723 1.24704 1.19162 1.07981 1.09987 0.92992 1.20597 0.97093 0.97400 0.91443 1.20813 1.02277 1.01065 0.98040 1.18048 0.90201 0.89182 0.92398 1.20069 1.04544 1.33490 0.92266 0.89715 1.26889 0.96843 0.90556 1.03187 1.69797 1.15266 1.29557 1.26098 0.85217 0.79027 0.79714 0.76059 1.18472 1.18382 1.18182 1.20804 1.06887 1.06503 0.93512 1.20485 0.93403 0.93660 0.97412 0.91846 0.92358 0.92496 0.93374 0.92768 0.89907 0.93715 0.90774 0.92111 0.92108 0.91470 0.91724 0.87908 0.92052 0.89348 0.91129 0.94207 0.76046 0.86424 0.87595 0.88961 0.88101 0.88344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.91 71.98 0.71 -1.47 16 2 C -0.12 -2.46 6.01 30.59 0.18 -2.27 16 3 C 0.05 1.04 4.87 86.30 0.42 1.46 16 4 N -0.55 -13.32 4.60 -896.23 -4.12 -17.45 16 5 C 0.03 0.80 5.38 86.30 0.46 1.26 16 6 C -0.18 -3.92 8.86 71.98 0.64 -3.28 16 7 C 0.05 0.95 4.63 86.30 0.40 1.35 16 8 C 0.14 3.77 3.10 44.99 0.14 3.90 16 9 H 0.07 2.35 7.11 -2.39 -0.02 2.33 16 10 C -0.15 -3.31 9.52 71.98 0.69 -2.63 16 11 N -0.71 -22.90 2.74 -445.60 -1.22 -24.12 16 12 C 0.57 24.53 7.16 86.73 0.62 25.15 16 13 O -0.61 -29.80 15.75 -3.99 -0.06 -29.86 16 14 C -0.30 -13.70 5.89 -19.93 -0.12 -13.82 16 15 C -0.05 -2.03 9.47 22.25 0.21 -1.82 16 16 C -0.20 -9.93 8.68 22.47 0.20 -9.74 16 17 C 0.10 5.47 5.57 -21.28 -0.12 5.35 16 18 C -0.48 -24.14 8.99 23.46 0.21 -23.93 16 19 H 0.08 4.14 7.98 -2.91 -0.02 4.12 16 20 C 0.05 2.15 4.92 85.35 0.42 2.57 16 21 N -0.78 -37.02 11.44 21.87 0.25 -36.77 16 22 Si 0.98 34.32 29.64 68.60 2.03 36.35 16 23 H -0.26 -8.79 7.11 99.48 0.71 -8.08 16 24 H -0.26 -8.52 7.11 99.48 0.71 -7.82 16 25 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 26 C -0.26 -13.03 9.73 22.47 0.22 -12.81 16 27 C -0.03 -1.49 9.52 22.25 0.21 -1.28 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 1.11 6.53 -2.39 -0.02 1.09 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 1.35 7.69 -2.39 -0.02 1.34 16 34 H 0.04 0.78 6.13 -2.39 -0.01 0.76 16 35 H 0.07 2.44 4.56 -2.39 -0.01 2.43 16 36 H 0.06 1.74 6.36 -2.39 -0.02 1.72 16 37 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.07 1.24 6.25 -2.39 -0.01 1.22 16 39 H 0.06 1.24 5.75 -2.39 -0.01 1.23 16 40 H 0.10 1.65 7.65 -2.38 -0.02 1.64 16 41 H 0.06 1.09 5.54 -2.39 -0.01 1.08 16 42 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 43 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.40 11.58 4.77 -92.71 -0.44 11.14 16 46 H 0.12 4.23 6.37 -2.91 -0.02 4.21 16 47 H 0.11 5.21 6.38 -2.91 -0.02 5.19 16 48 H 0.30 12.42 8.29 -92.71 -0.77 11.65 16 49 H 0.10 4.83 8.06 -2.91 -0.02 4.81 16 50 H 0.10 4.77 7.63 -2.91 -0.02 4.75 16 Total: -1.00 -61.55 385.89 2.87 -58.68 By element: Atomic # 1 Polarization: 44.66 SS G_CDS: 0.50 Total: 45.16 kcal Atomic # 6 Polarization: -37.49 SS G_CDS: 5.50 Total: -31.99 kcal Atomic # 7 Polarization: -73.24 SS G_CDS: -5.09 Total: -78.34 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.06 Total: -29.86 kcal Atomic # 14 Polarization: 34.32 SS G_CDS: 2.03 Total: 36.35 kcal Total: -61.55 2.87 -58.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358349881.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.174 kcal (2) G-P(sol) polarization free energy of solvation -61.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds