Wall clock time and date at job start Tue Mar 31 2020 11:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46803 * 2 1 4 4 H 1.09001 * 109.47174 * 304.99819 * 3 2 1 5 5 C 1.52999 * 109.47238 * 64.99553 * 3 2 1 6 6 C 1.53002 * 109.47239 * 184.99993 * 3 2 1 7 7 N 1.46496 * 109.47095 * 174.99819 * 6 3 2 8 8 C 1.34780 * 120.00056 * 179.97438 * 7 6 3 9 9 O 1.21589 * 119.99401 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00036 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99912 * 179.97438 * 10 8 7 12 12 H 1.09005 * 109.47049 * 35.00861 * 11 10 8 13 13 C 1.53005 * 109.47170 * 155.00263 * 11 10 8 14 14 C 1.53004 * 109.46983 * 295.00551 * 13 11 10 15 15 C 1.50695 * 109.46637 * 179.97438 * 14 13 11 16 16 H 1.08004 * 120.00546 * 0.27598 * 15 14 13 17 17 C 1.37885 * 119.99721 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00035 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99853 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47228 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46793 * 120.00131 * 19 17 15 22 22 H 1.48500 * 109.47000 * 240.00224 * 19 17 15 23 23 C 1.50696 * 109.47666 * 275.00851 * 11 10 8 24 24 C 1.38241 * 119.99748 * 319.72362 * 23 11 10 25 25 C 1.38231 * 120.00006 * 179.78971 * 24 23 11 26 26 C 1.38237 * 119.99975 * 0.44300 * 25 24 23 27 27 C 1.38232 * 120.00146 * 359.81024 * 26 25 24 28 28 C 1.38230 * 120.00461 * 140.00057 * 23 11 10 29 29 H 1.09001 * 109.46709 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47661 * 300.00009 * 1 2 3 31 31 H 1.09000 * 109.46885 * 60.00756 * 1 2 3 32 32 H 1.08999 * 109.47383 * 240.00317 * 2 1 3 33 33 H 1.08993 * 109.47360 * 119.99685 * 2 1 3 34 34 H 1.09001 * 109.46821 * 60.00049 * 5 3 2 35 35 H 1.09001 * 109.47404 * 180.02562 * 5 3 2 36 36 H 1.08996 * 109.47229 * 300.00640 * 5 3 2 37 37 H 1.09004 * 109.47096 * 54.99976 * 6 3 2 38 38 H 1.09003 * 109.46407 * 295.00062 * 6 3 2 39 39 H 0.97006 * 120.00098 * 0.02562 * 7 6 3 40 40 H 0.96994 * 120.00442 * 0.02562 * 10 8 7 41 41 H 1.09000 * 109.46931 * 175.00576 * 13 11 10 42 42 H 1.08997 * 109.46785 * 55.00056 * 13 11 10 43 43 H 1.08992 * 109.47421 * 59.99948 * 14 13 11 44 44 H 1.08997 * 109.46955 * 299.99401 * 14 13 11 45 45 H 0.97000 * 119.99706 * 179.97438 * 18 17 15 46 46 H 1.08003 * 119.99756 * 0.02562 * 24 23 11 47 47 H 1.07999 * 119.99887 * 180.27392 * 25 24 23 48 48 H 1.07997 * 119.99961 * 179.83876 * 26 25 24 49 49 H 1.07994 * 120.00483 * 180.02562 * 27 26 25 50 50 H 1.08002 * 120.00332 * 359.97438 * 28 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6351 2.1266 1.3073 6 6 3.5648 1.4445 -0.1257 7 7 4.0431 2.8240 -0.2458 8 6 5.3623 3.0716 -0.3685 9 8 6.1552 2.1499 -0.3799 10 7 5.8022 4.3406 -0.4795 11 6 7.2362 4.6097 -0.6122 12 1 7.7024 3.8158 -1.1957 13 6 7.4401 5.9503 -1.3209 14 6 6.9116 5.8553 -2.7536 15 6 7.1119 7.1759 -3.4514 16 1 7.5742 7.9992 -2.9270 17 6 6.7104 7.3314 -4.7613 18 7 6.1523 6.3273 -5.4016 19 14 6.9580 8.9686 -5.6260 20 1 7.6019 9.9284 -4.6937 21 1 7.8273 8.7743 -6.8142 22 1 5.6420 9.5043 -6.0577 23 6 7.8660 4.6637 0.7558 24 6 7.2020 5.2826 1.7984 25 6 7.7777 5.3284 3.0543 26 6 9.0216 4.7634 3.2654 27 6 9.6879 4.1491 2.2216 28 6 9.1102 4.0995 0.9667 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8899 34 1 2.0697 1.5876 2.1491 35 1 1.9979 3.1545 1.3071 36 1 0.5488 2.1252 1.3968 37 1 3.8571 0.8802 -1.0113 38 1 4.0028 0.9837 0.7597 39 1 3.4104 3.5593 -0.2364 40 1 5.1696 5.0758 -0.4708 41 1 8.5025 6.1929 -1.3408 42 1 6.8992 6.7304 -0.7852 43 1 5.8492 5.6128 -2.7337 44 1 7.4525 5.0753 -3.2894 45 1 5.8696 6.4368 -6.3230 46 1 6.2317 5.7270 1.6326 47 1 7.2570 5.8081 3.8699 48 1 9.4725 4.8014 4.2460 49 1 10.6594 3.7073 2.3866 50 1 9.6308 3.6195 0.1512 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420846882.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:27 Heat of formation + Delta-G solvation = -40.237812 kcal Electronic energy + Delta-G solvation = -26639.003971 eV Core-core repulsion = 23050.746592 eV Total energy + Delta-G solvation = -3588.257379 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.02954 -38.86931 -37.31201 -35.62052 -33.73259 -33.12601 -31.43221 -30.64730 -30.30413 -29.70460 -27.02224 -26.15716 -23.77669 -23.25192 -22.37586 -21.16960 -20.64299 -20.29746 -19.87079 -18.02934 -16.89868 -16.38828 -15.93647 -15.69062 -15.18031 -14.86792 -14.78132 -14.54304 -14.46140 -14.00054 -13.70347 -13.60064 -13.21094 -13.13880 -12.99787 -12.72182 -12.48975 -12.24596 -12.23796 -12.07762 -11.70658 -11.63108 -11.09194 -11.01982 -10.97446 -10.89261 -10.86960 -10.78686 -10.60318 -10.51932 -10.01307 -9.72633 -9.55042 -9.13519 -8.96324 -8.69926 -8.50579 -8.38090 -8.35186 -6.01564 -4.04506 1.58212 1.62793 3.01990 3.29244 3.37255 3.40997 3.60208 4.02214 4.44023 4.50334 4.57672 4.64098 4.76771 5.07354 5.09696 5.09779 5.17994 5.26005 5.29606 5.33315 5.34165 5.41103 5.57854 5.66605 5.71412 5.72266 5.73736 5.80017 5.81956 5.83844 5.90278 5.95134 6.13846 6.16620 6.17579 6.23798 6.41415 6.59978 6.68001 6.68817 6.71443 6.81464 6.99529 7.04093 7.22349 7.28001 7.66312 7.78191 7.98242 8.34699 8.40002 8.97621 9.03064 9.59839 11.09207 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.007248 B = 0.003944 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3862.463872 B = 7097.079448 C =10236.751519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.105 4.105 4 H 0.078 0.922 5 C -0.148 4.148 6 C 0.145 3.855 7 N -0.749 5.749 8 C 0.707 3.293 9 O -0.594 6.594 10 N -0.727 5.727 11 C 0.200 3.800 12 H 0.093 0.907 13 C -0.112 4.112 14 C 0.025 3.975 15 C -0.521 4.521 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.893 5.893 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.285 1.285 23 C -0.077 4.077 24 C -0.106 4.106 25 C -0.125 4.125 26 C -0.131 4.131 27 C -0.122 4.122 28 C -0.106 4.106 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.394 0.606 40 H 0.396 0.604 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.019 0.981 44 H 0.016 0.984 45 H 0.259 0.741 46 H 0.116 0.884 47 H 0.115 0.885 48 H 0.115 0.885 49 H 0.118 0.882 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.924 -8.146 16.449 19.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.124 4.124 4 H 0.096 0.904 5 C -0.206 4.206 6 C 0.021 3.979 7 N -0.405 5.405 8 C 0.406 3.594 9 O -0.472 6.472 10 N -0.380 5.380 11 C 0.095 3.905 12 H 0.111 0.889 13 C -0.150 4.150 14 C -0.012 4.012 15 C -0.560 4.560 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.532 5.532 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.078 4.078 24 C -0.124 4.124 25 C -0.143 4.143 26 C -0.150 4.150 27 C -0.140 4.140 28 C -0.125 4.125 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.228 0.772 40 H 0.230 0.770 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.037 0.963 44 H 0.034 0.966 45 H 0.069 0.931 46 H 0.134 0.866 47 H 0.133 0.867 48 H 0.133 0.867 49 H 0.136 0.864 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.253 -9.058 16.252 19.629 hybrid contribution -0.505 1.593 -0.587 1.771 sum -6.759 -7.465 15.665 18.623 Atomic orbital electron populations 1.21810 0.95647 1.01581 1.01975 1.21483 0.96014 0.95521 1.02467 1.21427 0.94619 0.97256 0.99119 0.90379 1.21891 1.01280 1.00506 0.96874 1.21174 0.92560 0.82340 1.01846 1.45082 1.06070 1.08899 1.80487 1.15918 0.82272 0.83653 0.77512 1.90889 1.54479 1.43556 1.58303 1.45111 1.08533 1.06003 1.78371 1.19965 0.78896 1.00388 0.91272 0.88905 1.21979 1.01727 0.92340 0.98985 1.19086 0.96488 0.97044 0.88587 1.21279 1.39616 0.97940 0.97144 0.92649 1.25020 0.95297 0.96501 0.97568 1.69984 1.41284 1.30711 1.11214 0.86571 0.77791 0.84172 0.79673 1.19750 1.21036 1.21072 1.20467 0.94737 0.96304 0.96316 1.20888 0.99750 0.99191 0.92608 1.21054 0.95881 1.00431 0.96950 1.21037 0.95602 0.99609 0.98718 1.21071 0.99798 0.99945 0.93182 1.21040 0.95273 0.98996 0.97154 0.92801 0.92496 0.92658 0.91567 0.91722 0.92545 0.92620 0.92330 0.91787 0.91966 0.77222 0.76997 0.91485 0.92631 0.96290 0.96563 0.93089 0.86588 0.86654 0.86705 0.86433 0.86015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.67 37.16 0.36 -0.69 16 2 C -0.12 -0.91 5.40 -26.73 -0.14 -1.05 16 3 C -0.11 -0.91 2.42 -90.62 -0.22 -1.13 16 4 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 5 C -0.15 -1.16 8.82 37.16 0.33 -0.83 16 6 C 0.15 1.71 5.06 -4.04 -0.02 1.69 16 7 N -0.75 -9.82 5.29 -65.22 -0.34 -10.16 16 8 C 0.71 12.12 8.52 -86.92 -0.74 11.38 16 9 O -0.59 -12.49 16.01 5.29 0.08 -12.40 16 10 N -0.73 -11.79 3.78 -59.81 -0.23 -12.02 16 11 C 0.20 3.55 2.17 -69.08 -0.15 3.40 16 12 H 0.09 1.87 7.44 -51.93 -0.39 1.48 16 13 C -0.11 -2.20 4.67 -26.73 -0.12 -2.32 16 14 C 0.02 0.62 4.86 -27.88 -0.14 0.49 16 15 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 16 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 19 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C -0.08 -1.24 4.91 -104.63 -0.51 -1.75 16 24 C -0.11 -1.54 9.32 -39.58 -0.37 -1.91 16 25 C -0.13 -1.62 10.05 -39.58 -0.40 -2.02 16 26 C -0.13 -1.65 10.05 -39.58 -0.40 -2.05 16 27 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 28 C -0.11 -1.63 9.67 -39.58 -0.38 -2.01 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.36 6.56 -51.93 -0.34 0.02 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.05 0.44 7.18 -51.93 -0.37 0.06 16 36 H 0.06 0.40 6.56 -51.93 -0.34 0.06 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.39 4.20 7.67 -40.82 -0.31 3.89 16 40 H 0.40 5.66 8.62 -40.82 -0.35 5.31 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.02 0.49 7.75 -51.93 -0.40 0.08 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.12 1.53 7.73 -52.48 -0.41 1.13 16 47 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 48 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 49 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 50 H 0.12 1.79 8.04 -52.49 -0.42 1.37 16 LS Contribution 406.77 15.07 6.13 6.13 Total: -1.00 -33.03 406.77 -11.16 -44.19 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -8.80 Total: 7.68 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -3.72 Total: -13.98 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: 0.17 Total: -47.98 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.08 Total: -12.40 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.03 -11.16 -44.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420846882.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.952 kcal (2) G-P(sol) polarization free energy of solvation -33.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds