Wall clock time and date at job start Tue Mar 31 2020 11:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46803 * 2 1 4 4 H 1.09001 * 109.47174 * 304.99819 * 3 2 1 5 5 C 1.52999 * 109.47238 * 64.99553 * 3 2 1 6 6 C 1.53002 * 109.47239 * 184.99993 * 3 2 1 7 7 N 1.46496 * 109.47095 * 174.99819 * 6 3 2 8 8 C 1.34780 * 120.00056 * 179.97438 * 7 6 3 9 9 O 1.21589 * 119.99401 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00036 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99912 * 179.97438 * 10 8 7 12 12 H 1.09005 * 109.47049 * 35.00861 * 11 10 8 13 13 C 1.53005 * 109.47170 * 155.00263 * 11 10 8 14 14 C 1.53004 * 109.46983 * 295.00551 * 13 11 10 15 15 C 1.50695 * 109.46637 * 179.97438 * 14 13 11 16 16 H 1.08004 * 120.00546 * 0.27598 * 15 14 13 17 17 C 1.37885 * 119.99721 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00035 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99853 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47228 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46793 * 120.00131 * 19 17 15 22 22 H 1.48500 * 109.47000 * 240.00224 * 19 17 15 23 23 C 1.50696 * 109.47666 * 275.00851 * 11 10 8 24 24 C 1.38241 * 119.99748 * 319.72362 * 23 11 10 25 25 C 1.38231 * 120.00006 * 179.78971 * 24 23 11 26 26 C 1.38237 * 119.99975 * 0.44300 * 25 24 23 27 27 C 1.38232 * 120.00146 * 359.81024 * 26 25 24 28 28 C 1.38230 * 120.00461 * 140.00057 * 23 11 10 29 29 H 1.09001 * 109.46709 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47661 * 300.00009 * 1 2 3 31 31 H 1.09000 * 109.46885 * 60.00756 * 1 2 3 32 32 H 1.08999 * 109.47383 * 240.00317 * 2 1 3 33 33 H 1.08993 * 109.47360 * 119.99685 * 2 1 3 34 34 H 1.09001 * 109.46821 * 60.00049 * 5 3 2 35 35 H 1.09001 * 109.47404 * 180.02562 * 5 3 2 36 36 H 1.08996 * 109.47229 * 300.00640 * 5 3 2 37 37 H 1.09004 * 109.47096 * 54.99976 * 6 3 2 38 38 H 1.09003 * 109.46407 * 295.00062 * 6 3 2 39 39 H 0.97006 * 120.00098 * 0.02562 * 7 6 3 40 40 H 0.96994 * 120.00442 * 0.02562 * 10 8 7 41 41 H 1.09000 * 109.46931 * 175.00576 * 13 11 10 42 42 H 1.08997 * 109.46785 * 55.00056 * 13 11 10 43 43 H 1.08992 * 109.47421 * 59.99948 * 14 13 11 44 44 H 1.08997 * 109.46955 * 299.99401 * 14 13 11 45 45 H 0.97000 * 119.99706 * 179.97438 * 18 17 15 46 46 H 1.08003 * 119.99756 * 0.02562 * 24 23 11 47 47 H 1.07999 * 119.99887 * 180.27392 * 25 24 23 48 48 H 1.07997 * 119.99961 * 179.83876 * 26 25 24 49 49 H 1.07994 * 120.00483 * 180.02562 * 27 26 25 50 50 H 1.08002 * 120.00332 * 359.97438 * 28 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6351 2.1266 1.3073 6 6 3.5648 1.4445 -0.1257 7 7 4.0431 2.8240 -0.2458 8 6 5.3623 3.0716 -0.3685 9 8 6.1552 2.1499 -0.3799 10 7 5.8022 4.3406 -0.4795 11 6 7.2362 4.6097 -0.6122 12 1 7.7024 3.8158 -1.1957 13 6 7.4401 5.9503 -1.3209 14 6 6.9116 5.8553 -2.7536 15 6 7.1119 7.1759 -3.4514 16 1 7.5742 7.9992 -2.9270 17 6 6.7104 7.3314 -4.7613 18 7 6.1523 6.3273 -5.4016 19 14 6.9580 8.9686 -5.6260 20 1 7.6019 9.9284 -4.6937 21 1 7.8273 8.7743 -6.8142 22 1 5.6420 9.5043 -6.0577 23 6 7.8660 4.6637 0.7558 24 6 7.2020 5.2826 1.7984 25 6 7.7777 5.3284 3.0543 26 6 9.0216 4.7634 3.2654 27 6 9.6879 4.1491 2.2216 28 6 9.1102 4.0995 0.9667 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8899 34 1 2.0697 1.5876 2.1491 35 1 1.9979 3.1545 1.3071 36 1 0.5488 2.1252 1.3968 37 1 3.8571 0.8802 -1.0113 38 1 4.0028 0.9837 0.7597 39 1 3.4104 3.5593 -0.2364 40 1 5.1696 5.0758 -0.4708 41 1 8.5025 6.1929 -1.3408 42 1 6.8992 6.7304 -0.7852 43 1 5.8492 5.6128 -2.7337 44 1 7.4525 5.0753 -3.2894 45 1 5.8696 6.4368 -6.3230 46 1 6.2317 5.7270 1.6326 47 1 7.2570 5.8081 3.8699 48 1 9.4725 4.8014 4.2460 49 1 10.6594 3.7073 2.3866 50 1 9.6308 3.6195 0.1512 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420846882.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:26 Heat of formation + Delta-G solvation = -58.622606 kcal Electronic energy + Delta-G solvation = -26639.801195 eV Core-core repulsion = 23050.746592 eV Total energy + Delta-G solvation = -3589.054603 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.34958 -39.99939 -38.23096 -37.06419 -35.13090 -34.86485 -32.86622 -31.84999 -31.68314 -30.47508 -28.34339 -27.41254 -25.35071 -24.17477 -23.46671 -22.61300 -22.05478 -21.38588 -21.02180 -19.29962 -18.52784 -17.92384 -17.24424 -16.76154 -16.52895 -16.13274 -16.02514 -15.69311 -15.64173 -15.20720 -14.88127 -14.62808 -14.58280 -14.34101 -14.20351 -13.95176 -13.80056 -13.66665 -13.37013 -12.92970 -12.88304 -12.85479 -12.52764 -12.42853 -12.37234 -12.12115 -11.90819 -11.78510 -11.71918 -11.58337 -11.45052 -11.42784 -11.24480 -11.18319 -10.55779 -10.32643 -9.79280 -9.73573 -9.54101 -8.18395 -6.29574 0.48306 0.55923 1.40133 1.41429 1.54050 1.77879 2.21459 2.41517 2.93177 3.15002 3.36753 3.77450 3.84640 3.92977 4.00005 4.03360 4.18304 4.25752 4.32471 4.37744 4.43965 4.54100 4.65120 4.67351 4.68635 4.74674 4.76204 4.80544 4.90229 4.99581 5.11077 5.11455 5.15595 5.17421 5.19631 5.21231 5.23283 5.45787 5.48070 5.52337 5.53307 5.57576 5.62096 5.64798 5.69477 5.83059 5.86129 6.05514 6.17185 6.24928 6.87753 7.12570 7.39835 7.63293 8.92961 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.007248 B = 0.003944 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3862.463872 B = 7097.079448 C =10236.751519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.095 4.095 4 H 0.079 0.921 5 C -0.146 4.146 6 C 0.145 3.855 7 N -0.733 5.733 8 C 0.701 3.299 9 O -0.637 6.637 10 N -0.721 5.721 11 C 0.212 3.788 12 H 0.058 0.942 13 C -0.094 4.094 14 C 0.033 3.967 15 C -0.538 4.538 16 H 0.062 0.938 17 C 0.000 4.000 18 N -0.932 5.932 19 Si 0.962 3.038 20 H -0.261 1.261 21 H -0.283 1.283 22 H -0.277 1.277 23 C -0.097 4.097 24 C -0.115 4.115 25 C -0.125 4.125 26 C -0.128 4.128 27 C -0.125 4.125 28 C -0.130 4.130 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.045 0.955 38 H 0.055 0.945 39 H 0.408 0.592 40 H 0.406 0.594 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.004 0.996 44 H -0.023 1.023 45 H 0.262 0.738 46 H 0.126 0.874 47 H 0.146 0.854 48 H 0.148 0.852 49 H 0.141 0.859 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.683 -6.566 18.718 21.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.114 4.114 4 H 0.097 0.903 5 C -0.203 4.203 6 C 0.021 3.979 7 N -0.390 5.390 8 C 0.400 3.600 9 O -0.519 6.519 10 N -0.375 5.375 11 C 0.106 3.894 12 H 0.076 0.924 13 C -0.132 4.132 14 C -0.004 4.004 15 C -0.576 4.576 16 H 0.080 0.920 17 C -0.197 4.197 18 N -0.573 5.573 19 Si 0.787 3.213 20 H -0.184 1.184 21 H -0.209 1.209 22 H -0.203 1.203 23 C -0.099 4.099 24 C -0.133 4.133 25 C -0.143 4.143 26 C -0.146 4.146 27 C -0.143 4.143 28 C -0.149 4.149 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.244 0.756 40 H 0.242 0.758 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.022 0.978 44 H -0.004 1.004 45 H 0.070 0.930 46 H 0.144 0.856 47 H 0.163 0.837 48 H 0.166 0.834 49 H 0.159 0.841 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.052 -7.451 18.539 21.188 hybrid contribution -0.250 1.041 -1.261 1.655 sum -7.302 -6.410 17.278 19.822 Atomic orbital electron populations 1.21790 0.94508 1.02154 1.02276 1.21488 0.96929 0.94691 1.02367 1.21364 0.91889 0.98219 0.99923 0.90260 1.21877 1.02231 1.00232 0.95937 1.21276 0.94832 0.81192 1.00630 1.44998 1.04828 1.10096 1.79058 1.16134 0.83181 0.83260 0.77385 1.90853 1.55941 1.44793 1.60288 1.44974 1.08242 1.06207 1.78066 1.19577 0.79688 0.97842 0.92270 0.92384 1.21708 1.01391 0.94064 0.95987 1.18927 0.95144 0.94983 0.91339 1.21707 1.39327 0.98870 0.97742 0.91979 1.25952 0.94912 1.00360 0.98504 1.70123 1.42401 1.33094 1.11645 0.85436 0.77934 0.79548 0.78344 1.18445 1.20886 1.20304 1.20294 0.95468 0.98493 0.95615 1.21067 1.00201 0.99138 0.92916 1.21438 0.96101 0.99797 0.96929 1.21477 0.95295 0.97989 0.99795 1.21376 1.00793 0.99714 0.92410 1.21184 0.95520 0.99893 0.98306 0.92160 0.91718 0.92792 0.92218 0.91399 0.92657 0.92618 0.90855 0.93669 0.92619 0.75560 0.75784 0.91709 0.90995 0.97785 1.00439 0.92955 0.85607 0.83656 0.83401 0.84124 0.86884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.67 71.98 0.70 -1.12 16 2 C -0.12 -1.72 5.40 30.60 0.17 -1.56 16 3 C -0.10 -1.58 2.42 -10.79 -0.03 -1.61 16 4 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 5 C -0.15 -2.02 8.82 71.98 0.63 -1.39 16 6 C 0.14 3.49 5.06 86.38 0.44 3.92 16 7 N -0.73 -19.50 5.29 -478.53 -2.53 -22.03 16 8 C 0.70 24.96 8.52 179.06 1.53 26.49 16 9 O -0.64 -28.23 16.01 -4.00 -0.06 -28.30 16 10 N -0.72 -24.16 3.78 -461.41 -1.75 -25.90 16 11 C 0.21 7.88 2.17 44.25 0.10 7.98 16 12 H 0.06 2.54 7.44 -2.38 -0.02 2.53 16 13 C -0.09 -3.77 4.67 30.60 0.14 -3.62 16 14 C 0.03 1.72 4.86 29.85 0.15 1.87 16 15 C -0.54 -30.05 9.11 25.60 0.23 -29.82 16 16 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 17 C 0.00 0.02 5.46 84.66 0.46 0.49 16 18 N -0.93 -56.70 13.29 21.45 0.28 -56.41 16 19 Si 0.96 43.91 29.54 68.60 2.03 45.94 16 20 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 22 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 23 C -0.10 -3.18 4.91 -19.87 -0.10 -3.28 16 24 C -0.11 -3.17 9.32 22.27 0.21 -2.97 16 25 C -0.12 -2.86 10.05 22.27 0.22 -2.64 16 26 C -0.13 -2.81 10.05 22.27 0.22 -2.58 16 27 C -0.13 -3.14 10.05 22.27 0.22 -2.92 16 28 C -0.13 -4.08 9.67 22.27 0.22 -3.86 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.69 6.56 -2.39 -0.02 0.67 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.05 0.77 7.18 -2.39 -0.02 0.76 16 36 H 0.07 0.83 6.56 -2.39 -0.02 0.81 16 37 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.41 8.50 7.67 -92.70 -0.71 7.79 16 40 H 0.41 11.70 8.62 -92.71 -0.80 10.90 16 41 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.00 0.20 7.75 -2.39 -0.02 0.19 16 44 H -0.02 -1.35 8.14 -2.39 -0.02 -1.37 16 45 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 46 H 0.13 3.11 7.73 -2.91 -0.02 3.09 16 47 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 48 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 49 H 0.14 2.78 8.06 -2.91 -0.02 2.75 16 50 H 0.11 3.57 8.04 -2.91 -0.02 3.55 16 Total: -1.00 -73.45 406.77 2.88 -70.56 By element: Atomic # 1 Polarization: 33.36 SS G_CDS: -0.60 Total: 32.76 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: 5.51 Total: -16.61 kcal Atomic # 7 Polarization: -100.36 SS G_CDS: -3.99 Total: -104.35 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -0.06 Total: -28.30 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -73.45 2.88 -70.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420846882.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.942 kcal (2) G-P(sol) polarization free energy of solvation -73.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds