Wall clock time and date at job start Tue Mar 31 2020 12:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47157 * 2 1 4 4 N 1.46506 * 109.47079 * 179.97438 * 3 2 1 5 5 C 1.36940 * 119.99874 * 275.65949 * 4 3 2 6 6 H 1.07998 * 119.99851 * 33.99087 * 5 4 3 7 7 C 1.38812 * 119.99803 * 213.98462 * 5 4 3 8 8 N 1.31623 * 120.00071 * 22.95802 * 7 5 4 9 9 Si 1.86799 * 120.00274 * 202.95050 * 7 5 4 10 10 H 1.48507 * 109.46777 * 60.00312 * 9 7 5 11 11 H 1.48495 * 109.47131 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47180 * 300.00943 * 9 7 5 13 13 C 1.46494 * 119.99977 * 95.65845 * 4 3 2 14 14 C 1.50700 * 109.47231 * 270.00155 * 13 4 3 15 15 C 1.38238 * 119.99773 * 269.72601 * 14 13 4 16 16 C 1.38243 * 119.99522 * 179.74191 * 15 14 13 17 17 C 1.38223 * 120.00281 * 0.55307 * 16 15 14 18 18 C 1.50699 * 120.00515 * 179.72416 * 17 16 15 19 19 N 1.46899 * 109.47168 * 269.97976 * 18 17 16 20 20 C 1.47009 * 111.00070 * 293.63123 * 19 18 17 21 21 C 1.53099 * 109.26216 * 177.60640 * 20 19 18 22 22 O 1.43019 * 109.25815 * 56.84646 * 21 20 19 23 23 C 1.43015 * 113.73545 * 301.33586 * 22 21 20 24 24 C 1.47011 * 111.00363 * 169.99280 * 19 18 17 25 25 C 1.38239 * 119.99981 * 359.70164 * 17 16 15 26 26 C 1.38233 * 120.00160 * 90.00119 * 14 13 4 27 27 H 1.08997 * 109.47405 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46815 * 299.99994 * 1 2 3 29 29 H 1.09002 * 109.46937 * 59.99938 * 1 2 3 30 30 H 1.09006 * 109.46994 * 240.00311 * 2 1 3 31 31 H 1.08997 * 109.46983 * 120.00550 * 2 1 3 32 32 H 1.09002 * 109.47370 * 60.00464 * 3 2 1 33 33 H 1.08997 * 109.47623 * 300.00158 * 3 2 1 34 34 H 0.96990 * 120.00505 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.47475 * 30.00056 * 13 4 3 36 36 H 1.09001 * 109.47252 * 150.00335 * 13 4 3 37 37 H 1.07999 * 120.00159 * 0.02562 * 15 14 13 38 38 H 1.08004 * 119.99568 * 180.27174 * 16 15 14 39 39 H 1.09006 * 109.46694 * 29.97674 * 18 17 16 40 40 H 1.08999 * 109.47859 * 149.97441 * 18 17 16 41 41 H 1.08997 * 109.51023 * 297.54294 * 20 19 18 42 42 H 1.09007 * 109.50721 * 57.66920 * 20 19 18 43 43 H 1.08998 * 109.50415 * 296.91687 * 21 20 19 44 44 H 1.08997 * 109.54528 * 176.80254 * 21 20 19 45 45 H 1.09000 * 109.50420 * 298.72671 * 23 22 21 46 46 H 1.09005 * 109.53550 * 178.62393 * 23 22 21 47 47 H 1.09003 * 109.50936 * 302.33090 * 24 19 18 48 48 H 1.09009 * 109.50494 * 62.41433 * 24 19 18 49 49 H 1.08003 * 120.00075 * 180.02562 * 25 17 16 50 50 H 1.08000 * 119.99926 * 0.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1892 1.3257 1.1811 6 1 3.7873 0.7211 1.9806 7 6 5.3995 1.9843 1.3499 8 7 5.6807 3.0420 0.6188 9 14 6.6289 1.3696 2.6149 10 1 7.0218 -0.0244 2.2865 11 1 7.8318 2.2401 2.5997 12 1 6.0100 1.4045 3.9643 13 6 4.2381 1.5674 -1.2616 14 6 4.4894 0.1963 -1.8343 15 6 5.6440 -0.4891 -1.5053 16 6 5.8720 -1.7491 -2.0265 17 6 4.9511 -2.3188 -2.8856 18 6 5.2025 -3.6897 -3.4587 19 7 5.9374 -3.5640 -4.7244 20 6 5.1121 -2.9095 -5.7500 21 6 5.9345 -2.7453 -7.0309 22 8 6.4091 -4.0263 -7.4542 23 6 7.2170 -4.6917 -6.4796 24 6 6.4077 -4.8756 -5.1932 25 6 3.7990 -1.6311 -3.2187 26 6 3.5682 -0.3736 -2.6931 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 6.5261 3.5024 0.7370 35 1 3.6493 2.1535 -1.9673 36 1 5.1904 2.0658 -1.0809 37 1 6.3656 -0.0422 -0.8376 38 1 6.7719 -2.2864 -1.7660 39 1 5.7916 -4.2758 -2.7532 40 1 4.2503 -4.1884 -3.6393 41 1 4.2348 -3.5223 -5.9569 42 1 4.7962 -1.9296 -5.3922 43 1 6.7827 -2.0888 -6.8372 44 1 5.3099 -2.3123 -7.8122 45 1 8.1025 -4.0917 -6.2699 46 1 7.5200 -5.6667 -6.8615 47 1 7.0374 -5.3310 -4.4288 48 1 5.5510 -5.5203 -5.3904 49 1 3.0793 -2.0764 -3.8896 50 1 2.6686 0.1640 -2.9539 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420916266.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:32 Heat of formation + Delta-G solvation = -1.737523 kcal Electronic energy + Delta-G solvation = -27427.972534 eV Core-core repulsion = 23841.384653 eV Total energy + Delta-G solvation = -3586.587881 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.86897 -38.70420 -36.41940 -35.48751 -33.04519 -31.88033 -31.31948 -30.39037 -30.24044 -28.22831 -25.85475 -25.54092 -24.20615 -23.58948 -22.02054 -21.76020 -20.52307 -20.29603 -19.86546 -16.78195 -16.72088 -16.34502 -15.68598 -15.39982 -15.22013 -15.06840 -14.53730 -14.46852 -14.27622 -14.13569 -13.99701 -13.72342 -13.17327 -12.86836 -12.79620 -12.59032 -12.28659 -12.03794 -11.86987 -11.58407 -11.53850 -11.39630 -11.31094 -10.96295 -10.94046 -10.76818 -10.72806 -10.54115 -10.36931 -10.23525 -10.00636 -9.88110 -9.80624 -9.71066 -8.53607 -8.49664 -8.23715 -7.84781 -6.63740 -5.82071 -3.35034 1.94549 2.05936 3.34854 3.41498 3.44276 3.62005 3.77168 4.41549 4.52707 4.68316 4.83168 4.84742 4.96208 5.07180 5.20990 5.24214 5.27818 5.37070 5.47215 5.51796 5.53609 5.54690 5.59439 5.66092 5.68601 5.75937 5.76963 5.80464 5.93830 6.09501 6.20843 6.24493 6.27475 6.46076 6.51243 6.59312 6.63449 6.67972 6.78044 6.82827 6.85927 6.95855 6.97642 7.10322 7.16490 7.20975 7.44521 7.65986 7.75767 7.79780 8.47435 9.15018 9.79001 10.35098 11.17622 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.014205 B = 0.003467 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.725117 B = 8074.202487 C = 9138.244607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.147 4.147 3 C 0.149 3.851 4 N -0.575 5.575 5 C -0.251 4.251 6 H 0.060 0.940 7 C 0.011 3.989 8 N -0.885 5.885 9 Si 0.891 3.109 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.281 1.281 13 C 0.167 3.833 14 C -0.062 4.062 15 C -0.100 4.100 16 C -0.102 4.102 17 C -0.108 4.108 18 C 0.103 3.897 19 N -0.530 5.530 20 C 0.016 3.984 21 C 0.064 3.936 22 O -0.389 6.389 23 C 0.064 3.936 24 C 0.017 3.983 25 C -0.121 4.121 26 C -0.121 4.121 27 H 0.041 0.959 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.043 0.957 33 H 0.034 0.966 34 H 0.256 0.744 35 H 0.032 0.968 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.039 0.961 42 H 0.096 0.904 43 H 0.060 0.940 44 H 0.097 0.903 45 H 0.059 0.941 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.040 0.960 49 H 0.104 0.896 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.224 -12.385 -12.131 17.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.186 4.186 3 C 0.023 3.977 4 N -0.294 5.294 5 C -0.381 4.381 6 H 0.078 0.922 7 C -0.189 4.189 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.207 1.207 13 C 0.041 3.959 14 C -0.065 4.065 15 C -0.119 4.119 16 C -0.121 4.121 17 C -0.109 4.109 18 C -0.024 4.024 19 N -0.256 5.256 20 C -0.112 4.112 21 C -0.013 4.013 22 O -0.308 6.308 23 C -0.013 4.013 24 C -0.111 4.111 25 C -0.140 4.140 26 C -0.140 4.140 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.126 0.874 37 H 0.136 0.864 38 H 0.127 0.873 39 H 0.097 0.903 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.114 0.886 43 H 0.079 0.921 44 H 0.115 0.885 45 H 0.078 0.922 46 H 0.113 0.887 47 H 0.103 0.897 48 H 0.058 0.942 49 H 0.122 0.878 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.717 -12.001 -12.192 17.123 hybrid contribution -0.037 -0.901 0.924 1.292 sum -0.754 -12.902 -11.268 17.147 Atomic orbital electron populations 1.21723 0.97531 1.00255 1.00918 1.22186 0.93548 1.01063 1.01849 1.20905 0.85069 0.93005 0.98746 1.43730 0.99309 1.84273 1.02052 1.18982 1.03096 1.23043 0.92981 0.92228 1.25023 1.00555 0.94996 0.98318 1.69960 1.23770 1.16709 1.42356 0.86548 0.81127 0.78634 0.81676 1.20791 1.21529 1.20724 1.20154 1.00905 0.89039 0.85759 1.21249 0.92324 1.00200 0.92725 1.21096 0.97818 0.94185 0.98755 1.20881 0.98143 0.95630 0.97401 1.19327 0.95780 0.95751 1.00000 1.20960 0.96349 0.94725 0.90320 1.62227 1.39779 1.20235 1.03315 1.22858 0.94835 1.01234 0.92317 1.22689 0.97998 0.85116 0.95535 1.87958 1.69236 1.32448 1.41133 1.22641 0.93153 0.97700 0.87777 1.22788 0.99476 0.90805 0.98077 1.20799 0.96921 0.95481 1.00814 1.20937 0.99099 0.95258 0.98728 0.93948 0.93314 0.93517 0.92344 0.92683 0.93817 0.94786 0.93396 0.95000 0.87409 0.86366 0.87260 0.90279 0.94432 0.94320 0.88606 0.92136 0.88536 0.92221 0.88668 0.89688 0.94192 0.87806 0.87225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 37.16 0.37 -1.79 16 2 C -0.15 -2.68 6.23 -26.73 -0.17 -2.85 16 3 C 0.15 3.09 5.72 -4.04 -0.02 3.07 16 4 N -0.58 -13.82 2.44 -174.61 -0.43 -14.25 16 5 C -0.25 -6.66 9.48 -15.06 -0.14 -6.81 16 6 H 0.06 1.61 7.93 -52.49 -0.42 1.19 16 7 C 0.01 0.29 4.95 -17.43 -0.09 0.21 16 8 N -0.89 -24.55 11.31 55.49 0.63 -23.92 16 9 Si 0.89 21.08 29.61 -169.99 -5.03 16.05 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.17 3.82 5.46 -5.20 -0.03 3.79 16 14 C -0.06 -1.24 5.44 -104.62 -0.57 -1.81 16 15 C -0.10 -2.00 9.70 -39.58 -0.38 -2.38 16 16 C -0.10 -1.75 9.70 -39.58 -0.38 -2.14 16 17 C -0.11 -1.66 4.90 -104.63 -0.51 -2.17 16 18 C 0.10 1.30 5.12 -4.98 -0.03 1.28 16 19 N -0.53 -6.39 4.72 -235.75 -1.11 -7.50 16 20 C 0.02 0.18 5.28 -3.71 -0.02 0.16 16 21 C 0.06 0.67 7.01 37.21 0.26 0.93 16 22 O -0.39 -4.50 10.83 -35.23 -0.38 -4.88 16 23 C 0.06 0.61 7.01 37.20 0.26 0.87 16 24 C 0.02 0.17 5.64 -3.72 -0.02 0.15 16 25 C -0.12 -1.88 7.94 -39.58 -0.31 -2.19 16 26 C -0.12 -2.12 7.87 -39.58 -0.31 -2.43 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 1.09 6.13 -51.93 -0.32 0.77 16 31 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.04 0.94 8.08 -51.93 -0.42 0.52 16 33 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 34 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.03 0.69 7.80 -51.93 -0.41 0.29 16 36 H 0.11 2.78 5.25 -51.93 -0.27 2.51 16 37 H 0.12 2.57 8.06 -52.49 -0.42 2.14 16 38 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 39 H 0.08 0.94 7.98 -51.93 -0.41 0.53 16 40 H 0.04 0.45 8.06 -51.93 -0.42 0.04 16 41 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.10 1.19 6.01 -51.93 -0.31 0.88 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 48 H 0.04 0.40 8.14 -51.92 -0.42 -0.03 16 49 H 0.10 1.39 8.00 -52.48 -0.42 0.97 16 50 H 0.11 1.80 8.02 -52.49 -0.42 1.38 16 LS Contribution 392.64 15.07 5.92 5.92 Total: -1.00 -28.28 392.64 -11.36 -39.64 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -8.85 Total: 3.05 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -2.10 Total: -14.11 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: -0.91 Total: -45.67 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -0.38 Total: -4.88 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -28.28 -11.36 -39.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420916266.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.902 kcal (2) G-P(sol) polarization free energy of solvation -28.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds