Wall clock time and date at job start Tue Mar 31 2020 12:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47157 * 2 1 4 4 N 1.46506 * 109.47079 * 179.97438 * 3 2 1 5 5 C 1.36940 * 119.99874 * 275.65949 * 4 3 2 6 6 H 1.07998 * 119.99851 * 33.99087 * 5 4 3 7 7 C 1.38812 * 119.99803 * 213.98462 * 5 4 3 8 8 N 1.31623 * 120.00071 * 22.95802 * 7 5 4 9 9 Si 1.86799 * 120.00274 * 202.95050 * 7 5 4 10 10 H 1.48507 * 109.46777 * 60.00312 * 9 7 5 11 11 H 1.48495 * 109.47131 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47180 * 300.00943 * 9 7 5 13 13 C 1.46494 * 119.99977 * 95.65845 * 4 3 2 14 14 C 1.50700 * 109.47231 * 270.00155 * 13 4 3 15 15 C 1.38238 * 119.99773 * 269.72601 * 14 13 4 16 16 C 1.38243 * 119.99522 * 179.74191 * 15 14 13 17 17 C 1.38223 * 120.00281 * 0.55307 * 16 15 14 18 18 C 1.50699 * 120.00515 * 179.72416 * 17 16 15 19 19 N 1.46899 * 109.47168 * 269.97976 * 18 17 16 20 20 C 1.47009 * 111.00070 * 293.63123 * 19 18 17 21 21 C 1.53099 * 109.26216 * 177.60640 * 20 19 18 22 22 O 1.43019 * 109.25815 * 56.84646 * 21 20 19 23 23 C 1.43015 * 113.73545 * 301.33586 * 22 21 20 24 24 C 1.47011 * 111.00363 * 169.99280 * 19 18 17 25 25 C 1.38239 * 119.99981 * 359.70164 * 17 16 15 26 26 C 1.38233 * 120.00160 * 90.00119 * 14 13 4 27 27 H 1.08997 * 109.47405 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46815 * 299.99994 * 1 2 3 29 29 H 1.09002 * 109.46937 * 59.99938 * 1 2 3 30 30 H 1.09006 * 109.46994 * 240.00311 * 2 1 3 31 31 H 1.08997 * 109.46983 * 120.00550 * 2 1 3 32 32 H 1.09002 * 109.47370 * 60.00464 * 3 2 1 33 33 H 1.08997 * 109.47623 * 300.00158 * 3 2 1 34 34 H 0.96990 * 120.00505 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.47475 * 30.00056 * 13 4 3 36 36 H 1.09001 * 109.47252 * 150.00335 * 13 4 3 37 37 H 1.07999 * 120.00159 * 0.02562 * 15 14 13 38 38 H 1.08004 * 119.99568 * 180.27174 * 16 15 14 39 39 H 1.09006 * 109.46694 * 29.97674 * 18 17 16 40 40 H 1.08999 * 109.47859 * 149.97441 * 18 17 16 41 41 H 1.08997 * 109.51023 * 297.54294 * 20 19 18 42 42 H 1.09007 * 109.50721 * 57.66920 * 20 19 18 43 43 H 1.08998 * 109.50415 * 296.91687 * 21 20 19 44 44 H 1.08997 * 109.54528 * 176.80254 * 21 20 19 45 45 H 1.09000 * 109.50420 * 298.72671 * 23 22 21 46 46 H 1.09005 * 109.53550 * 178.62393 * 23 22 21 47 47 H 1.09003 * 109.50936 * 302.33090 * 24 19 18 48 48 H 1.09009 * 109.50494 * 62.41433 * 24 19 18 49 49 H 1.08003 * 120.00075 * 180.02562 * 25 17 16 50 50 H 1.08000 * 119.99926 * 0.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1892 1.3257 1.1811 6 1 3.7873 0.7211 1.9806 7 6 5.3995 1.9843 1.3499 8 7 5.6807 3.0420 0.6188 9 14 6.6289 1.3696 2.6149 10 1 7.0218 -0.0244 2.2865 11 1 7.8318 2.2401 2.5997 12 1 6.0100 1.4045 3.9643 13 6 4.2381 1.5674 -1.2616 14 6 4.4894 0.1963 -1.8343 15 6 5.6440 -0.4891 -1.5053 16 6 5.8720 -1.7491 -2.0265 17 6 4.9511 -2.3188 -2.8856 18 6 5.2025 -3.6897 -3.4587 19 7 5.9374 -3.5640 -4.7244 20 6 5.1121 -2.9095 -5.7500 21 6 5.9345 -2.7453 -7.0309 22 8 6.4091 -4.0263 -7.4542 23 6 7.2170 -4.6917 -6.4796 24 6 6.4077 -4.8756 -5.1932 25 6 3.7990 -1.6311 -3.2187 26 6 3.5682 -0.3736 -2.6931 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 6.5261 3.5024 0.7370 35 1 3.6493 2.1535 -1.9673 36 1 5.1904 2.0658 -1.0809 37 1 6.3656 -0.0422 -0.8376 38 1 6.7719 -2.2864 -1.7660 39 1 5.7916 -4.2758 -2.7532 40 1 4.2503 -4.1884 -3.6393 41 1 4.2348 -3.5223 -5.9569 42 1 4.7962 -1.9296 -5.3922 43 1 6.7827 -2.0888 -6.8372 44 1 5.3099 -2.3123 -7.8122 45 1 8.1025 -4.0917 -6.2699 46 1 7.5200 -5.6667 -6.8615 47 1 7.0374 -5.3310 -4.4288 48 1 5.5510 -5.5203 -5.3904 49 1 3.0793 -2.0764 -3.8896 50 1 2.6686 0.1640 -2.9539 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420916266.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:31 Heat of formation + Delta-G solvation = -16.497250 kcal Electronic energy + Delta-G solvation = -27428.612564 eV Core-core repulsion = 23841.384653 eV Total energy + Delta-G solvation = -3587.227911 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.86164 -39.94481 -37.93600 -36.63127 -34.68249 -33.37841 -32.20514 -31.97619 -31.58942 -29.41806 -27.34487 -27.15676 -25.05770 -24.82898 -23.41712 -23.25247 -21.86712 -21.44858 -21.27270 -18.69022 -17.58248 -17.26941 -16.99589 -16.75498 -16.38904 -16.10368 -15.97825 -15.86890 -15.71799 -15.37600 -15.17962 -14.96734 -14.82188 -14.30354 -14.16765 -13.68371 -13.43537 -13.34311 -13.09130 -13.03308 -12.95659 -12.68480 -12.60670 -12.46665 -12.35346 -12.19637 -12.16723 -11.93761 -11.86521 -11.68136 -11.56269 -11.48502 -11.30790 -10.66906 -10.50293 -9.63975 -9.46542 -9.19926 -8.59154 -7.82715 -5.40309 0.57382 0.66291 1.42615 1.45880 1.51904 2.49213 2.70570 2.93765 3.16637 3.26414 3.79173 3.86344 3.96612 3.98861 4.06560 4.19880 4.24123 4.25332 4.27986 4.32305 4.36029 4.42030 4.49578 4.63400 4.64871 4.68343 4.74163 4.76035 4.81045 4.82326 4.83629 4.91243 4.96217 4.97943 5.02553 5.19214 5.25576 5.29071 5.31826 5.45263 5.60791 5.64642 5.67325 5.73783 5.78083 5.95672 6.00663 6.07623 6.17900 6.28463 6.47735 7.15998 7.87093 8.37678 9.12563 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.014205 B = 0.003467 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.725117 B = 8074.202487 C = 9138.244607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.133 4.133 3 C 0.146 3.854 4 N -0.590 5.590 5 C -0.258 4.258 6 H 0.049 0.951 7 C -0.029 4.029 8 N -0.913 5.913 9 Si 0.943 3.057 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.277 1.277 13 C 0.173 3.827 14 C -0.080 4.080 15 C -0.122 4.122 16 C -0.105 4.105 17 C -0.095 4.095 18 C 0.107 3.893 19 N -0.544 5.544 20 C 0.017 3.983 21 C 0.064 3.936 22 O -0.404 6.404 23 C 0.061 3.939 24 C 0.019 3.981 25 C -0.111 4.111 26 C -0.119 4.119 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.031 0.969 32 H 0.029 0.971 33 H 0.047 0.953 34 H 0.252 0.748 35 H 0.034 0.966 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.122 0.878 39 H 0.089 0.911 40 H 0.051 0.949 41 H 0.044 0.956 42 H 0.085 0.915 43 H 0.053 0.947 44 H 0.112 0.888 45 H 0.056 0.944 46 H 0.118 0.882 47 H 0.098 0.902 48 H 0.044 0.956 49 H 0.135 0.865 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.291 -15.053 -13.610 20.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.173 4.173 3 C 0.021 3.979 4 N -0.310 5.310 5 C -0.388 4.388 6 H 0.067 0.933 7 C -0.226 4.226 8 N -0.557 5.557 9 Si 0.771 3.229 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.202 1.202 13 C 0.048 3.952 14 C -0.083 4.083 15 C -0.142 4.142 16 C -0.124 4.124 17 C -0.096 4.096 18 C -0.019 4.019 19 N -0.270 5.270 20 C -0.111 4.111 21 C -0.013 4.013 22 O -0.322 6.322 23 C -0.016 4.016 24 C -0.109 4.109 25 C -0.129 4.129 26 C -0.138 4.138 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.140 0.860 39 H 0.107 0.893 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.103 0.897 43 H 0.071 0.929 44 H 0.130 0.870 45 H 0.074 0.926 46 H 0.136 0.864 47 H 0.117 0.883 48 H 0.062 0.938 49 H 0.153 0.847 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.800 -14.690 -13.681 20.155 hybrid contribution 0.282 -0.121 1.290 1.326 sum -1.518 -14.811 -12.391 19.370 Atomic orbital electron populations 1.21654 0.94407 1.01735 1.01835 1.21987 0.96130 0.98565 1.00608 1.21023 0.83440 0.94820 0.98627 1.43914 1.00623 1.84671 1.01770 1.19084 1.03631 1.22365 0.93736 0.93298 1.25564 1.01801 0.95166 1.00111 1.70075 1.23832 1.17824 1.43981 0.85720 0.79233 0.77942 0.79962 1.20716 1.21633 1.20243 1.19924 0.99088 0.90703 0.85523 1.20925 0.93641 0.99021 0.94739 1.20960 0.97720 0.95772 0.99705 1.21006 0.99215 0.94570 0.97572 1.19660 0.94770 0.96827 0.98311 1.20928 0.97428 0.92735 0.90858 1.62187 1.39826 1.21713 1.03259 1.22829 0.95118 1.00653 0.92455 1.22732 0.97905 0.84904 0.95765 1.87943 1.69541 1.32724 1.42035 1.22806 0.92664 0.98604 0.87484 1.22845 0.99794 0.89719 0.98557 1.21093 0.97293 0.94412 1.00104 1.21012 0.98708 0.96126 0.97959 0.92165 0.93036 0.92013 0.92450 0.94985 0.95214 0.93504 0.93861 0.94757 0.90809 0.89466 0.85966 0.89284 0.93109 0.93794 0.89697 0.92910 0.86954 0.92603 0.86404 0.88336 0.93805 0.84704 0.86073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.91 71.98 0.71 -3.04 16 2 C -0.13 -4.75 6.23 30.59 0.19 -4.56 16 3 C 0.15 6.11 5.72 86.38 0.49 6.60 16 4 N -0.59 -29.22 2.44 -706.34 -1.73 -30.95 16 5 C -0.26 -14.16 9.48 84.03 0.80 -13.36 16 6 H 0.05 2.74 7.93 -2.91 -0.02 2.71 16 7 C -0.03 -1.60 4.95 84.86 0.42 -1.18 16 8 N -0.91 -52.82 11.31 21.65 0.24 -52.58 16 9 Si 0.94 44.73 29.61 68.60 2.03 46.76 16 10 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 11 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 C 0.17 8.21 5.46 85.63 0.47 8.68 16 14 C -0.08 -3.29 5.44 -19.87 -0.11 -3.40 16 15 C -0.12 -5.06 9.70 22.27 0.22 -4.84 16 16 C -0.11 -3.54 9.70 22.27 0.22 -3.33 16 17 C -0.09 -2.69 4.90 -19.87 -0.10 -2.79 16 18 C 0.11 2.35 5.12 85.56 0.44 2.79 16 19 N -0.54 -11.54 4.72 -899.78 -4.24 -15.78 16 20 C 0.02 0.36 5.28 86.32 0.46 0.81 16 21 C 0.06 1.22 7.01 72.02 0.50 1.72 16 22 O -0.40 -8.37 10.83 -148.98 -1.61 -9.98 16 23 C 0.06 1.00 7.01 72.01 0.50 1.50 16 24 C 0.02 0.31 5.64 86.31 0.49 0.80 16 25 C -0.11 -3.11 7.94 22.27 0.18 -2.94 16 26 C -0.12 -4.00 7.87 22.27 0.18 -3.83 16 27 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.06 2.05 6.13 -2.38 -0.01 2.03 16 31 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.03 1.29 8.08 -2.39 -0.02 1.28 16 33 H 0.05 1.81 7.83 -2.39 -0.02 1.79 16 34 H 0.25 14.17 8.31 -92.72 -0.77 13.40 16 35 H 0.03 1.54 7.80 -2.38 -0.02 1.52 16 36 H 0.07 4.04 5.25 -2.39 -0.01 4.03 16 37 H 0.09 4.06 8.06 -2.91 -0.02 4.03 16 38 H 0.12 3.72 8.06 -2.91 -0.02 3.70 16 39 H 0.09 1.80 7.98 -2.38 -0.02 1.78 16 40 H 0.05 1.01 8.06 -2.39 -0.02 0.99 16 41 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.08 1.90 6.01 -2.38 -0.01 1.88 16 43 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.12 1.36 8.14 -2.38 -0.02 1.34 16 47 H 0.10 1.37 8.09 -2.39 -0.02 1.35 16 48 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 49 H 0.14 3.01 8.00 -2.91 -0.02 2.99 16 50 H 0.12 3.74 8.02 -2.91 -0.02 3.72 16 Total: -1.00 -62.81 392.64 1.63 -61.18 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.88 Total: 21.72 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: 6.05 Total: -20.37 kcal Atomic # 7 Polarization: -93.58 SS G_CDS: -5.73 Total: -99.31 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -1.61 Total: -9.98 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -62.81 1.63 -61.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420916266.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.685 kcal (2) G-P(sol) polarization free energy of solvation -62.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds