Wall clock time and date at job start Tue Mar 31 2020 12:06:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52994 * 109.47348 * 2 1
4 4 H 1.09003 * 109.47005 * 175.73773 * 3 2 1
5 5 C 1.50700 * 109.46886 * 55.74400 * 3 2 1
6 6 H 1.08006 * 120.00020 * 239.99690 * 5 3 2
7 7 C 1.37870 * 120.00551 * 59.99890 * 5 3 2
8 8 N 1.31515 * 119.99782 * 359.97438 * 7 5 3
9 9 Si 1.86798 * 120.00589 * 179.97438 * 7 5 3
10 10 H 1.48501 * 109.46706 * 0.02562 * 9 7 5
11 11 H 1.48500 * 109.47349 * 119.99645 * 9 7 5
12 12 H 1.48497 * 109.47575 * 240.00273 * 9 7 5
13 13 N 1.46903 * 109.47258 * 295.74313 * 3 2 1
14 14 C 1.46905 * 110.99735 * 272.88198 * 13 3 2
15 15 H 1.08997 * 109.47238 * 36.44304 * 14 13 3
16 16 C 1.53003 * 109.47139 * 276.44451 * 14 13 3
17 17 C 1.50696 * 109.46756 * 156.44363 * 14 13 3
18 18 O 1.21275 * 120.00366 * 359.97438 * 17 14 13
19 19 N 1.34776 * 119.99718 * 179.97438 * 17 14 13
20 20 C 1.46499 * 120.00281 * 180.02562 * 19 17 14
21 21 C 1.52996 * 109.47490 * 180.02562 * 20 19 17
22 22 H 1.09004 * 109.46895 * 304.99742 * 21 20 19
23 23 C 1.52992 * 109.47399 * 64.99508 * 21 20 19
24 24 C 1.50702 * 109.47151 * 185.00220 * 21 20 19
25 25 C 1.38236 * 120.00208 * 119.99794 * 24 21 20
26 26 C 1.38232 * 119.99946 * 179.97438 * 25 24 21
27 27 C 1.38236 * 120.00218 * 359.97438 * 26 25 24
28 28 C 1.38237 * 119.99729 * 0.02562 * 27 26 25
29 29 C 1.38235 * 120.00355 * 0.06840 * 28 27 26
30 30 H 1.08999 * 109.46699 * 305.12050 * 1 2 3
31 31 H 1.09003 * 109.46892 * 65.11684 * 1 2 3
32 32 H 1.08997 * 109.47323 * 185.12177 * 1 2 3
33 33 H 1.09005 * 109.46508 * 239.99857 * 2 1 3
34 34 H 1.08999 * 109.46730 * 120.00484 * 2 1 3
35 35 H 0.97000 * 120.00434 * 180.02562 * 8 7 5
36 36 H 1.00894 * 111.00238 * 36.83512 * 13 3 2
37 37 H 1.08999 * 109.47155 * 60.00127 * 16 14 13
38 38 H 1.08995 * 109.46789 * 179.97438 * 16 14 13
39 39 H 1.08997 * 109.46936 * 300.00038 * 16 14 13
40 40 H 0.97003 * 120.00201 * 0.02562 * 19 17 14
41 41 H 1.08997 * 109.47127 * 59.99775 * 20 19 17
42 42 H 1.09008 * 109.47082 * 300.00377 * 20 19 17
43 43 H 1.09005 * 109.46664 * 60.00731 * 23 21 20
44 44 H 1.09004 * 109.46905 * 180.02562 * 23 21 20
45 45 H 1.08996 * 109.47307 * 300.00518 * 23 21 20
46 46 H 1.08001 * 119.99843 * 359.97254 * 25 24 21
47 47 H 1.08003 * 120.00183 * 179.97438 * 26 25 24
48 48 H 1.07997 * 120.00226 * 179.72040 * 27 26 25
49 49 H 1.08006 * 119.99871 * 179.97438 * 28 27 26
50 50 H 1.07994 * 120.00324 * 179.97438 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 3.1274 1.4433 0.0764
5 6 1.4535 2.1826 1.1744
6 1 0.8418 3.0575 1.0104
7 6 1.6976 1.7430 2.4581
8 7 2.4420 0.6774 2.6578
9 14 0.9711 2.6609 3.9138
10 1 0.1774 3.8165 3.4241
11 1 0.0904 1.7475 4.6854
12 1 2.0674 3.1481 4.7890
13 7 1.6362 2.1047 -1.2475
14 6 2.6236 1.8727 -2.3102
15 1 3.0237 0.8628 -2.2203
16 6 3.7625 2.8859 -2.1783
17 6 1.9618 2.0330 -3.6545
18 8 0.7835 2.3125 -3.7209
19 7 2.6793 1.8659 -4.7831
20 6 2.0361 2.0223 -6.0900
21 6 3.0644 1.7806 -7.1968
22 1 3.9180 2.4425 -7.0505
23 6 3.5335 0.3252 -7.1481
24 6 2.4352 2.0611 -8.5371
25 6 2.9642 3.0396 -9.3579
26 6 2.3873 3.2965 -10.5875
27 6 1.2817 2.5746 -10.9967
28 6 0.7527 1.5962 -10.1759
29 6 1.3284 1.3405 -8.9454
30 1 -0.3633 0.5912 0.8406
31 1 -0.3633 0.4324 -0.9323
32 1 -0.3634 -1.0235 0.0917
33 1 1.8933 -0.5139 -0.8900
34 1 1.8933 -0.5139 0.8900
35 1 2.6136 0.3678 3.5610
36 1 0.7174 1.8035 -1.5357
37 1 4.2412 2.7699 -1.2059
38 1 4.4953 2.7134 -2.9665
39 1 3.3624 3.8958 -2.2681
40 1 3.6216 1.6419 -4.7301
41 1 1.6360 3.0322 -6.1795
42 1 1.2247 1.3005 -6.1844
43 1 2.6799 -0.3367 -7.2945
44 1 4.2665 0.1531 -7.9364
45 1 3.9886 0.1223 -6.1787
46 1 3.8282 3.6033 -9.0383
47 1 2.8004 4.0613 -11.2286
48 1 0.8282 2.7785 -11.9554
49 1 -0.1114 1.0324 -10.4954
50 1 0.9148 0.5764 -8.3040
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000516191605.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:06:36
Heat of formation + Delta-G solvation = -27.661368 kcal
Electronic energy + Delta-G solvation = -26550.835777 eV
Core-core repulsion = 22963.123754 eV
Total energy + Delta-G solvation = -3587.712023 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 318.205 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-40.09687 -39.39223 -36.70371 -35.93598 -33.51050 -32.90161 -31.21401 -31.14815
-29.64802 -28.48559 -26.69224 -26.08945 -23.96842 -23.37304 -22.92979 -22.33802
-20.49637 -19.97327 -18.91720 -17.37905 -17.02306 -16.21900 -15.77620 -15.53794
-15.43403 -15.12384 -14.66623 -14.53488 -14.12856 -13.85632 -13.71205 -13.51197
-13.23184 -12.94819 -12.81407 -12.66073 -12.50425 -12.36090 -12.10358 -11.78353
-11.69049 -11.55263 -11.40387 -11.16036 -11.11437 -10.99243 -10.90179 -10.68504
-10.47033 -9.95351 -9.84881 -9.53872 -9.37165 -9.20977 -9.00344 -8.99252
-8.90392 -8.31012 -7.20760 -5.94812 -3.95250 1.04467 1.11330 2.94267
3.24751 3.34515 3.42641 3.48950 3.51238 4.37610 4.39745 4.48367
4.69756 4.71520 4.80151 4.84695 5.03751 5.08813 5.18730 5.21253
5.24940 5.37224 5.44956 5.50881 5.60730 5.63793 5.72265 5.75027
5.76090 5.85425 5.89569 6.08749 6.17584 6.23059 6.31004 6.33738
6.39508 6.43981 6.49765 6.60443 6.68241 6.70666 6.95128 7.26649
7.30652 7.54260 7.60501 7.73886 7.93968 8.30953 8.45458 8.61276
8.66399 9.11546 9.68286 11.12455
Molecular weight = 318.20amu
Principal moments of inertia in cm(-1)
A = 0.029549 B = 0.002230 C = 0.002214
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 947.354748 B =12553.366309 C =12645.252119
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.146 4.146
3 C 0.215 3.785
4 H 0.035 0.965
5 C -0.483 4.483
6 H 0.063 0.937
7 C 0.056 3.944
8 N -0.897 5.897
9 Si 0.893 3.107
10 H -0.273 1.273
11 H -0.286 1.286
12 H -0.286 1.286
13 N -0.668 5.668
14 C 0.068 3.932
15 H 0.059 0.941
16 C -0.131 4.131
17 C 0.515 3.485
18 O -0.531 6.531
19 N -0.735 5.735
20 C 0.129 3.871
21 C -0.064 4.064
22 H 0.085 0.915
23 C -0.145 4.145
24 C -0.073 4.073
25 C -0.114 4.114
26 C -0.120 4.120
27 C -0.124 4.124
28 C -0.118 4.118
29 C -0.112 4.112
30 H 0.069 0.931
31 H 0.030 0.970
32 H 0.023 0.977
33 H 0.008 0.992
34 H 0.094 0.906
35 H 0.258 0.742
36 H 0.342 0.658
37 H 0.072 0.928
38 H 0.045 0.955
39 H 0.062 0.938
40 H 0.399 0.601
41 H 0.067 0.933
42 H 0.067 0.933
43 H 0.060 0.940
44 H 0.059 0.941
45 H 0.062 0.938
46 H 0.122 0.878
47 H 0.121 0.879
48 H 0.120 0.880
49 H 0.122 0.878
50 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.125 0.043 -25.374 25.707
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.186 4.186
3 C 0.107 3.893
4 H 0.052 0.948
5 C -0.522 4.522
6 H 0.081 0.919
7 C -0.145 4.145
8 N -0.538 5.538
9 Si 0.722 3.278
10 H -0.197 1.197
11 H -0.213 1.213
12 H -0.213 1.213
13 N -0.303 5.303
14 C -0.046 4.046
15 H 0.076 0.924
16 C -0.189 4.189
17 C 0.302 3.698
18 O -0.406 6.406
19 N -0.390 5.390
20 C 0.005 3.995
21 C -0.082 4.082
22 H 0.104 0.896
23 C -0.203 4.203
24 C -0.074 4.074
25 C -0.132 4.132
26 C -0.138 4.138
27 C -0.142 4.142
28 C -0.136 4.136
29 C -0.130 4.130
30 H 0.088 0.912
31 H 0.049 0.951
32 H 0.042 0.958
33 H 0.026 0.974
34 H 0.113 0.887
35 H 0.068 0.932
36 H 0.164 0.836
37 H 0.091 0.909
38 H 0.064 0.936
39 H 0.081 0.919
40 H 0.233 0.767
41 H 0.085 0.915
42 H 0.085 0.915
43 H 0.079 0.921
44 H 0.078 0.922
45 H 0.081 0.919
46 H 0.140 0.860
47 H 0.139 0.861
48 H 0.138 0.862
49 H 0.140 0.860
50 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges 3.564 0.759 -25.086 25.349
hybrid contribution -0.076 -0.687 0.561 0.890
sum 3.488 0.073 -24.525 24.772
Atomic orbital electron populations
1.21609 0.97614 0.98702 1.01022 1.22126 0.95158 1.01144 1.00131
1.19301 0.95884 0.88480 0.85609 0.94759 1.21095 1.30296 1.11414
0.89416 0.91861 1.24906 0.95593 0.95207 0.98749 1.69885 1.39003
1.23889 1.20982 0.86509 0.78864 0.79895 0.82579 1.19719 1.21281
1.21255 1.60853 1.03898 1.63183 1.02396 1.21449 0.95426 0.98879
0.88830 0.92367 1.21720 0.95792 0.99324 1.02056 1.21116 0.87071
0.75482 0.86153 1.90665 1.16126 1.46474 1.87290 1.46037 1.13791
1.73679 1.05455 1.21321 0.94902 1.02110 0.81157 1.20378 0.98022
0.98582 0.91253 0.89618 1.21879 1.01671 0.94559 1.02166 1.19686
0.95996 0.96318 0.95399 1.21084 1.00173 0.97582 0.94397 1.21141
0.96475 0.99727 0.96443 1.21165 0.96724 0.96521 0.99840 1.21166
0.99909 0.98111 0.94443 1.21064 0.95748 0.99718 0.96420 0.91209
0.95141 0.95765 0.97364 0.88735 0.93237 0.83612 0.90923 0.93571
0.91909 0.76675 0.91473 0.91498 0.92120 0.92196 0.91933 0.86021
0.86106 0.86215 0.86047 0.85930
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.95 9.40 37.16 0.35 -2.60 16
2 C -0.15 -3.46 5.51 -26.73 -0.15 -3.60 16
3 C 0.21 5.29 2.13 -68.87 -0.15 5.14 16
4 H 0.03 0.91 7.01 -51.93 -0.36 0.54 16
5 C -0.48 -13.17 7.29 -34.44 -0.25 -13.42 16
6 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16
7 C 0.06 1.52 5.30 -17.82 -0.09 1.43 16
8 N -0.90 -25.15 11.36 55.43 0.63 -24.52 16
9 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16
10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16
11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
13 N -0.67 -14.77 5.91 -102.17 -0.60 -15.37 16
14 C 0.07 1.21 2.84 -68.86 -0.20 1.01 16
15 H 0.06 1.02 7.26 -51.93 -0.38 0.64 16
16 C -0.13 -2.04 9.28 37.16 0.34 -1.70 16
17 C 0.52 8.60 7.18 -10.99 -0.08 8.52 16
18 O -0.53 -10.89 15.67 5.56 0.09 -10.81 16
19 N -0.74 -8.80 5.18 -60.30 -0.31 -9.11 16
20 C 0.13 1.41 4.80 -4.04 -0.02 1.39 16
21 C -0.06 -0.51 2.60 -91.78 -0.24 -0.75 16
22 H 0.09 0.61 7.88 -51.93 -0.41 0.20 16
23 C -0.15 -1.06 8.88 37.15 0.33 -0.73 16
24 C -0.07 -0.63 4.78 -104.62 -0.50 -1.13 16
25 C -0.11 -0.92 9.67 -39.58 -0.38 -1.30 16
26 C -0.12 -0.91 10.05 -39.58 -0.40 -1.30 16
27 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16
28 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16
29 C -0.11 -0.97 8.76 -39.58 -0.35 -1.31 16
30 H 0.07 1.69 6.90 -51.93 -0.36 1.33 16
31 H 0.03 0.64 6.59 -51.93 -0.34 0.30 16
32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16
33 H 0.01 0.17 7.53 -51.93 -0.39 -0.22 16
34 H 0.09 2.48 6.19 -51.93 -0.32 2.16 16
35 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16
36 H 0.34 7.86 5.34 -39.30 -0.21 7.65 16
37 H 0.07 1.25 7.35 -51.93 -0.38 0.87 16
38 H 0.05 0.54 7.56 -51.93 -0.39 0.14 16
39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16
40 H 0.40 3.71 7.07 -40.82 -0.29 3.42 16
41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
42 H 0.07 0.79 7.57 -51.92 -0.39 0.40 16
43 H 0.06 0.46 7.39 -51.93 -0.38 0.08 16
44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
45 H 0.06 0.44 7.18 -51.93 -0.37 0.06 16
46 H 0.12 0.79 7.95 -52.49 -0.42 0.38 16
47 H 0.12 0.68 8.06 -52.48 -0.42 0.25 16
48 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16
49 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16
50 H 0.12 0.99 7.16 -52.49 -0.38 0.61 16
LS Contribution 394.34 15.07 5.94 5.94
Total: -1.00 -30.97 394.34 -10.13 -41.10
By element:
Atomic # 1 Polarization: 17.59 SS G_CDS: -8.28 Total: 9.31 kcal
Atomic # 6 Polarization: -10.47 SS G_CDS: -2.57 Total: -13.04 kcal
Atomic # 7 Polarization: -48.72 SS G_CDS: -0.29 Total: -49.01 kcal
Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.81 kcal
Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal
Total LS contribution 5.94 Total: 5.94 kcal
Total: -30.97 -10.13 -41.10 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000516191605.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.443 kcal
(2) G-P(sol) polarization free energy of solvation -30.974 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.531 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.131 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.105 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.661 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds