Wall clock time and date at job start Tue Mar 31 2020 12:06:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52994 * 109.47348 * 2 1
4 4 H 1.09003 * 109.47005 * 175.73773 * 3 2 1
5 5 C 1.50700 * 109.46886 * 55.74400 * 3 2 1
6 6 H 1.08006 * 120.00020 * 239.99690 * 5 3 2
7 7 C 1.37870 * 120.00551 * 59.99890 * 5 3 2
8 8 N 1.31515 * 119.99782 * 359.97438 * 7 5 3
9 9 Si 1.86798 * 120.00589 * 179.97438 * 7 5 3
10 10 H 1.48501 * 109.46706 * 0.02562 * 9 7 5
11 11 H 1.48500 * 109.47349 * 119.99645 * 9 7 5
12 12 H 1.48497 * 109.47575 * 240.00273 * 9 7 5
13 13 N 1.46903 * 109.47258 * 295.74313 * 3 2 1
14 14 C 1.46905 * 110.99735 * 272.88198 * 13 3 2
15 15 H 1.08997 * 109.47238 * 36.44304 * 14 13 3
16 16 C 1.53003 * 109.47139 * 276.44451 * 14 13 3
17 17 C 1.50696 * 109.46756 * 156.44363 * 14 13 3
18 18 O 1.21275 * 120.00366 * 359.97438 * 17 14 13
19 19 N 1.34776 * 119.99718 * 179.97438 * 17 14 13
20 20 C 1.46499 * 120.00281 * 180.02562 * 19 17 14
21 21 C 1.52996 * 109.47490 * 180.02562 * 20 19 17
22 22 H 1.09004 * 109.46895 * 304.99742 * 21 20 19
23 23 C 1.52992 * 109.47399 * 64.99508 * 21 20 19
24 24 C 1.50702 * 109.47151 * 185.00220 * 21 20 19
25 25 C 1.38236 * 120.00208 * 119.99794 * 24 21 20
26 26 C 1.38232 * 119.99946 * 179.97438 * 25 24 21
27 27 C 1.38236 * 120.00218 * 359.97438 * 26 25 24
28 28 C 1.38237 * 119.99729 * 0.02562 * 27 26 25
29 29 C 1.38235 * 120.00355 * 0.06840 * 28 27 26
30 30 H 1.08999 * 109.46699 * 305.12050 * 1 2 3
31 31 H 1.09003 * 109.46892 * 65.11684 * 1 2 3
32 32 H 1.08997 * 109.47323 * 185.12177 * 1 2 3
33 33 H 1.09005 * 109.46508 * 239.99857 * 2 1 3
34 34 H 1.08999 * 109.46730 * 120.00484 * 2 1 3
35 35 H 0.97000 * 120.00434 * 180.02562 * 8 7 5
36 36 H 1.00894 * 111.00238 * 36.83512 * 13 3 2
37 37 H 1.08999 * 109.47155 * 60.00127 * 16 14 13
38 38 H 1.08995 * 109.46789 * 179.97438 * 16 14 13
39 39 H 1.08997 * 109.46936 * 300.00038 * 16 14 13
40 40 H 0.97003 * 120.00201 * 0.02562 * 19 17 14
41 41 H 1.08997 * 109.47127 * 59.99775 * 20 19 17
42 42 H 1.09008 * 109.47082 * 300.00377 * 20 19 17
43 43 H 1.09005 * 109.46664 * 60.00731 * 23 21 20
44 44 H 1.09004 * 109.46905 * 180.02562 * 23 21 20
45 45 H 1.08996 * 109.47307 * 300.00518 * 23 21 20
46 46 H 1.08001 * 119.99843 * 359.97254 * 25 24 21
47 47 H 1.08003 * 120.00183 * 179.97438 * 26 25 24
48 48 H 1.07997 * 120.00226 * 179.72040 * 27 26 25
49 49 H 1.08006 * 119.99871 * 179.97438 * 28 27 26
50 50 H 1.07994 * 120.00324 * 179.97438 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 3.1274 1.4433 0.0764
5 6 1.4535 2.1826 1.1744
6 1 0.8418 3.0575 1.0104
7 6 1.6976 1.7430 2.4581
8 7 2.4420 0.6774 2.6578
9 14 0.9711 2.6609 3.9138
10 1 0.1774 3.8165 3.4241
11 1 0.0904 1.7475 4.6854
12 1 2.0674 3.1481 4.7890
13 7 1.6362 2.1047 -1.2475
14 6 2.6236 1.8727 -2.3102
15 1 3.0237 0.8628 -2.2203
16 6 3.7625 2.8859 -2.1783
17 6 1.9618 2.0330 -3.6545
18 8 0.7835 2.3125 -3.7209
19 7 2.6793 1.8659 -4.7831
20 6 2.0361 2.0223 -6.0900
21 6 3.0644 1.7806 -7.1968
22 1 3.9180 2.4425 -7.0505
23 6 3.5335 0.3252 -7.1481
24 6 2.4352 2.0611 -8.5371
25 6 2.9642 3.0396 -9.3579
26 6 2.3873 3.2965 -10.5875
27 6 1.2817 2.5746 -10.9967
28 6 0.7527 1.5962 -10.1759
29 6 1.3284 1.3405 -8.9454
30 1 -0.3633 0.5912 0.8406
31 1 -0.3633 0.4324 -0.9323
32 1 -0.3634 -1.0235 0.0917
33 1 1.8933 -0.5139 -0.8900
34 1 1.8933 -0.5139 0.8900
35 1 2.6136 0.3678 3.5610
36 1 0.7174 1.8035 -1.5357
37 1 4.2412 2.7699 -1.2059
38 1 4.4953 2.7134 -2.9665
39 1 3.3624 3.8958 -2.2681
40 1 3.6216 1.6419 -4.7301
41 1 1.6360 3.0322 -6.1795
42 1 1.2247 1.3005 -6.1844
43 1 2.6799 -0.3367 -7.2945
44 1 4.2665 0.1531 -7.9364
45 1 3.9886 0.1223 -6.1787
46 1 3.8282 3.6033 -9.0383
47 1 2.8004 4.0613 -11.2286
48 1 0.8282 2.7785 -11.9554
49 1 -0.1114 1.0324 -10.4954
50 1 0.9148 0.5764 -8.3040
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000516191605.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:06:35
Heat of formation + Delta-G solvation = -45.944800 kcal
Electronic energy + Delta-G solvation = -26551.628606 eV
Core-core repulsion = 22963.123754 eV
Total energy + Delta-G solvation = -3588.504853 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 318.205 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-41.15329 -40.27948 -38.24472 -37.03876 -35.02483 -34.19065 -32.98976 -31.77609
-30.46521 -29.92888 -28.00695 -27.59956 -25.46009 -24.67220 -23.84916 -23.21269
-21.54808 -21.13451 -20.55601 -18.78591 -17.85477 -17.54660 -17.31934 -16.71460
-16.54137 -16.40803 -15.88802 -15.57390 -15.41564 -14.88376 -14.72653 -14.56201
-14.43656 -14.25016 -14.11592 -13.96394 -13.83382 -13.48090 -13.18568 -13.07200
-12.92235 -12.82193 -12.59948 -12.54509 -12.40486 -12.33549 -12.17637 -11.89142
-11.76262 -11.70458 -11.62007 -11.45045 -10.99457 -10.71732 -10.40373 -10.12002
-9.79233 -9.60969 -8.95983 -8.04352 -6.11020 0.44800 0.52687 1.41986
1.45173 1.56551 1.60987 2.13105 2.48001 2.90014 3.24581 3.62493
3.69508 3.73615 3.88637 4.04204 4.16367 4.19099 4.22929 4.31374
4.34706 4.41132 4.52013 4.59059 4.62269 4.65236 4.72136 4.72538
4.82671 4.82818 4.93366 4.96855 5.09252 5.10618 5.15392 5.19866
5.31225 5.35804 5.37357 5.41558 5.43148 5.61167 5.65824 5.67533
5.73107 5.74919 5.85230 6.14261 6.32700 6.48325 6.70197 6.83422
6.99630 7.23639 7.56089 9.01279
Molecular weight = 318.20amu
Principal moments of inertia in cm(-1)
A = 0.029549 B = 0.002230 C = 0.002214
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 947.354748 B =12553.366309 C =12645.252119
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C -0.139 4.139
3 C 0.223 3.777
4 H 0.014 0.986
5 C -0.497 4.497
6 H 0.046 0.954
7 C 0.016 3.984
8 N -0.917 5.917
9 Si 0.949 3.051
10 H -0.275 1.275
11 H -0.282 1.282
12 H -0.281 1.281
13 N -0.680 5.680
14 C 0.064 3.936
15 H 0.067 0.933
16 C -0.124 4.124
17 C 0.519 3.481
18 O -0.574 6.574
19 N -0.711 5.711
20 C 0.132 3.868
21 C -0.051 4.051
22 H 0.102 0.898
23 C -0.144 4.144
24 C -0.086 4.086
25 C -0.123 4.123
26 C -0.127 4.127
27 C -0.132 4.132
28 C -0.130 4.130
29 C -0.127 4.127
30 H 0.046 0.954
31 H 0.037 0.963
32 H 0.044 0.956
33 H 0.025 0.975
34 H 0.068 0.932
35 H 0.259 0.741
36 H 0.335 0.665
37 H 0.052 0.948
38 H 0.092 0.908
39 H 0.051 0.949
40 H 0.415 0.585
41 H 0.052 0.948
42 H 0.056 0.944
43 H 0.053 0.947
44 H 0.069 0.931
45 H 0.067 0.933
46 H 0.137 0.863
47 H 0.140 0.860
48 H 0.138 0.862
49 H 0.134 0.866
50 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.086 0.139 -26.990 27.465
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C -0.179 4.179
3 C 0.115 3.885
4 H 0.032 0.968
5 C -0.536 4.536
6 H 0.064 0.936
7 C -0.182 4.182
8 N -0.558 5.558
9 Si 0.776 3.224
10 H -0.199 1.199
11 H -0.208 1.208
12 H -0.207 1.207
13 N -0.314 5.314
14 C -0.050 4.050
15 H 0.084 0.916
16 C -0.182 4.182
17 C 0.305 3.695
18 O -0.453 6.453
19 N -0.365 5.365
20 C 0.008 3.992
21 C -0.070 4.070
22 H 0.120 0.880
23 C -0.201 4.201
24 C -0.086 4.086
25 C -0.141 4.141
26 C -0.145 4.145
27 C -0.150 4.150
28 C -0.148 4.148
29 C -0.145 4.145
30 H 0.065 0.935
31 H 0.056 0.944
32 H 0.063 0.937
33 H 0.044 0.956
34 H 0.087 0.913
35 H 0.069 0.931
36 H 0.156 0.844
37 H 0.071 0.929
38 H 0.110 0.890
39 H 0.070 0.930
40 H 0.253 0.747
41 H 0.071 0.929
42 H 0.075 0.925
43 H 0.072 0.928
44 H 0.088 0.912
45 H 0.086 0.914
46 H 0.155 0.845
47 H 0.158 0.842
48 H 0.156 0.844
49 H 0.151 0.849
50 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges 4.575 0.848 -26.736 27.137
hybrid contribution -0.355 -0.714 0.953 1.242
sum 4.221 0.135 -25.782 26.126
Atomic orbital electron populations
1.21492 0.96609 0.99571 1.00380 1.21987 0.95998 1.00311 0.99618
1.19039 0.94294 0.88966 0.86194 0.96811 1.21258 1.30304 1.11192
0.90880 0.93618 1.25519 0.95929 0.95916 1.00842 1.69984 1.39638
1.24693 1.21458 0.85642 0.78228 0.78743 0.79814 1.19926 1.20803
1.20714 1.60741 1.04561 1.63103 1.02989 1.21559 0.94986 0.99962
0.88453 0.91572 1.21686 0.95768 0.98026 1.02716 1.20866 0.86511
0.75342 0.86763 1.90652 1.17919 1.48895 1.87799 1.45805 1.14320
1.71617 1.04719 1.21362 0.95660 1.00964 0.81191 1.20289 0.97385
0.99493 0.89795 0.88020 1.21877 1.01674 0.93766 1.02824 1.19785
0.96292 0.96809 0.95737 1.21342 1.00726 0.97467 0.94602 1.21456
0.96404 1.00041 0.96618 1.21470 0.96767 0.96161 1.00552 1.21416
1.00441 0.98558 0.94419 1.21209 0.96257 1.00143 0.96940 0.93538
0.94354 0.93743 0.95610 0.91303 0.93143 0.84366 0.92851 0.88957
0.92963 0.74700 0.92924 0.92518 0.92760 0.91245 0.91378 0.84525
0.84199 0.84397 0.84853 0.86060
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.47 9.40 71.98 0.68 -4.79 16
2 C -0.14 -6.61 5.51 30.59 0.17 -6.44 16
3 C 0.22 11.15 2.13 44.17 0.09 11.25 16
4 H 0.01 0.75 7.01 -2.39 -0.02 0.73 16
5 C -0.50 -27.62 7.29 25.60 0.19 -27.43 16
6 H 0.05 2.65 7.81 -2.91 -0.02 2.62 16
7 C 0.02 0.89 5.30 84.65 0.45 1.34 16
8 N -0.92 -51.82 11.36 21.44 0.24 -51.57 16
9 Si 0.95 44.48 29.54 68.60 2.03 46.50 16
10 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16
11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16
12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16
13 N -0.68 -30.33 5.91 -477.15 -2.82 -33.15 16
14 C 0.06 2.22 2.84 44.17 0.13 2.35 16
15 H 0.07 2.22 7.26 -2.39 -0.02 2.20 16
16 C -0.12 -3.71 9.28 71.98 0.67 -3.04 16
17 C 0.52 16.86 7.18 87.66 0.63 17.49 16
18 O -0.57 -23.64 15.67 -3.01 -0.05 -23.69 16
19 N -0.71 -15.70 5.18 -463.07 -2.40 -18.09 16
20 C 0.13 2.72 4.80 86.38 0.41 3.14 16
21 C -0.05 -0.71 2.60 -11.54 -0.03 -0.74 16
22 H 0.10 1.13 7.88 -2.38 -0.02 1.11 16
23 C -0.14 -1.78 8.88 71.98 0.64 -1.15 16
24 C -0.09 -1.35 4.78 -19.86 -0.09 -1.45 16
25 C -0.12 -1.75 9.67 22.27 0.22 -1.54 16
26 C -0.13 -1.68 10.05 22.27 0.22 -1.46 16
27 C -0.13 -1.78 10.05 22.27 0.22 -1.56 16
28 C -0.13 -1.97 10.05 22.27 0.22 -1.74 16
29 C -0.13 -2.13 8.76 22.27 0.20 -1.93 16
30 H 0.05 2.26 6.90 -2.39 -0.02 2.24 16
31 H 0.04 1.61 6.59 -2.39 -0.02 1.60 16
32 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16
33 H 0.03 1.10 7.53 -2.38 -0.02 1.08 16
34 H 0.07 3.64 6.19 -2.39 -0.01 3.63 16
35 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16
36 H 0.34 15.60 5.34 -89.70 -0.48 15.12 16
37 H 0.05 1.81 7.35 -2.39 -0.02 1.80 16
38 H 0.09 1.86 7.56 -2.39 -0.02 1.85 16
39 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16
40 H 0.42 6.45 7.07 -92.71 -0.66 5.79 16
41 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16
42 H 0.06 1.32 7.57 -2.38 -0.02 1.30 16
43 H 0.05 0.75 7.39 -2.38 -0.02 0.73 16
44 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16
45 H 0.07 0.76 7.18 -2.39 -0.02 0.74 16
46 H 0.14 1.44 7.95 -2.91 -0.02 1.41 16
47 H 0.14 1.23 8.06 -2.91 -0.02 1.20 16
48 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16
49 H 0.13 1.56 8.06 -2.91 -0.02 1.53 16
50 H 0.12 1.94 7.16 -2.91 -0.02 1.92 16
Total: -1.00 -67.65 394.34 1.81 -65.84
By element:
Atomic # 1 Polarization: 32.08 SS G_CDS: -0.21 Total: 31.87 kcal
Atomic # 6 Polarization: -22.72 SS G_CDS: 5.01 Total: -17.71 kcal
Atomic # 7 Polarization: -97.85 SS G_CDS: -4.97 Total: -102.82 kcal
Atomic # 8 Polarization: -23.64 SS G_CDS: -0.05 Total: -23.69 kcal
Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal
Total: -67.65 1.81 -65.84 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000516191605.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.896 kcal
(2) G-P(sol) polarization free energy of solvation -67.650 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.754 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.809 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.841 kcal
(6) G-S(sol) free energy of system = (1) + (5) -45.945 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds