Wall clock time and date at job start Tue Mar 31 2020 12:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46740 * 2 1 4 4 H 1.08997 * 109.46929 * 305.00151 * 3 2 1 5 5 C 1.50699 * 109.46600 * 185.00154 * 3 2 1 6 6 H 1.08000 * 120.00045 * 239.99721 * 5 3 2 7 7 C 1.37878 * 120.00171 * 60.00592 * 5 3 2 8 8 N 1.31511 * 120.00111 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 120.00024 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.47203 * 89.99636 * 9 7 5 11 11 H 1.48499 * 109.47055 * 209.99593 * 9 7 5 12 12 H 1.48501 * 109.46990 * 329.99473 * 9 7 5 13 13 N 1.46497 * 109.47020 * 65.00319 * 3 2 1 14 14 C 1.34776 * 119.99901 * 274.99850 * 13 3 2 15 15 O 1.21589 * 119.99989 * 359.97438 * 14 13 3 16 16 N 1.34775 * 120.00010 * 180.02562 * 14 13 3 17 17 C 1.39946 * 120.00276 * 174.68539 * 16 14 13 18 18 C 1.38862 * 120.06650 * 326.56519 * 17 16 14 19 19 C 1.38117 * 119.92596 * 179.76702 * 18 17 16 20 20 C 1.38281 * 120.07135 * 0.50581 * 19 18 17 21 21 C 1.50701 * 119.92853 * 179.71996 * 20 19 18 22 22 C 1.52998 * 109.47203 * 270.02315 * 21 20 19 23 23 C 1.53003 * 109.46589 * 180.02562 * 22 21 20 24 24 C 1.53009 * 109.46626 * 175.00074 * 23 22 21 25 25 C 1.52992 * 109.47449 * 294.99982 * 23 22 21 26 26 C 1.38282 * 120.13873 * 359.74816 * 20 19 18 27 27 C 1.38113 * 120.06621 * 359.97438 * 26 20 19 28 28 H 1.09006 * 109.47280 * 299.99830 * 1 2 3 29 29 H 1.09002 * 109.47363 * 59.99986 * 1 2 3 30 30 H 1.09007 * 109.47142 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46690 * 240.00617 * 2 1 3 32 32 H 1.08994 * 109.47412 * 119.99711 * 2 1 3 33 33 H 0.97001 * 120.00325 * 180.02562 * 8 7 5 34 34 H 0.97001 * 119.99766 * 94.99852 * 13 3 2 35 35 H 0.97003 * 119.99958 * 354.68572 * 16 14 13 36 36 H 1.07999 * 120.03965 * 359.97438 * 18 17 16 37 37 H 1.08008 * 119.96237 * 180.25285 * 19 18 17 38 38 H 1.09001 * 109.47279 * 30.03037 * 21 20 19 39 39 H 1.09006 * 109.46594 * 150.02218 * 21 20 19 40 40 H 1.08997 * 109.47465 * 300.00058 * 22 21 20 41 41 H 1.08994 * 109.47055 * 60.00472 * 22 21 20 42 42 H 1.08998 * 109.47353 * 55.00482 * 23 22 21 43 43 H 1.08998 * 109.46922 * 60.00143 * 24 23 22 44 44 H 1.09001 * 109.46552 * 179.97438 * 24 23 22 45 45 H 1.08992 * 109.47056 * 300.00026 * 24 23 22 46 46 H 1.09004 * 109.47436 * 300.00154 * 25 23 22 47 47 H 1.09000 * 109.47104 * 60.00157 * 25 23 22 48 48 H 1.08994 * 109.47554 * 180.02562 * 25 23 22 49 49 H 1.07998 * 119.96215 * 180.02562 * 26 20 19 50 50 H 1.08007 * 120.02746 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8889 0.6522 7 6 4.1432 0.8785 -1.2281 8 7 3.4061 0.3369 -2.1730 9 14 6.0049 0.8814 -1.3819 10 1 6.5548 -0.3500 -0.7604 11 1 6.3829 0.9226 -2.8174 12 1 6.5569 2.0740 -0.6903 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6643 1.3670 15 8 -0.3413 2.6325 0.4318 16 7 0.0787 3.2673 2.5185 17 6 -1.1391 3.9518 2.6022 18 6 -1.6431 4.6135 1.4904 19 6 -2.8476 5.2841 1.5749 20 6 -3.5463 5.3058 2.7680 21 6 -4.8571 6.0438 2.8584 22 6 -4.5990 7.4924 3.2777 23 6 -5.9299 8.2414 3.3700 24 6 -5.6847 9.6524 3.9086 25 6 -6.5634 8.3290 1.9801 26 6 -3.0444 4.6522 3.8785 27 6 -1.8433 3.9750 3.7988 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5137 0.8899 33 1 3.8292 -0.0615 -2.9497 34 1 2.2719 2.1231 1.9978 35 1 0.6663 3.2268 3.2892 36 1 -1.0955 4.6011 0.5595 37 1 -3.2421 5.7956 0.7093 38 1 -5.3501 6.0291 1.8864 39 1 -5.4961 5.5600 3.5972 40 1 -4.1060 7.5070 4.2497 41 1 -3.9600 7.9760 2.5389 42 1 -6.6014 7.7075 4.0424 43 1 -5.0132 10.1863 3.2362 44 1 -6.6329 10.1861 3.9740 45 1 -5.2335 9.5899 4.8988 46 1 -5.8919 8.8630 1.3077 47 1 -6.7380 7.3238 1.5964 48 1 -7.5113 8.8629 2.0458 49 1 -3.5927 4.6706 4.8088 50 1 -1.4517 3.4650 4.6666 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548442314.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:52 Heat of formation + Delta-G solvation = -51.941562 kcal Electronic energy + Delta-G solvation = -26229.390697 eV Core-core repulsion = 22640.625805 eV Total energy + Delta-G solvation = -3588.764892 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.60551 -39.99044 -37.88525 -37.03420 -35.67300 -34.35146 -33.10545 -32.15168 -31.79775 -29.27512 -28.32909 -27.94496 -25.28011 -24.56677 -23.86942 -22.65527 -21.61213 -21.32659 -20.73870 -19.76213 -18.72638 -17.85559 -17.13883 -16.68491 -16.47888 -16.17313 -15.94491 -15.67772 -15.11475 -14.96216 -14.75143 -14.57525 -14.44044 -14.30064 -14.13783 -13.71725 -13.51705 -13.45053 -13.18341 -13.02239 -12.89028 -12.69597 -12.64130 -12.52518 -12.27093 -12.16941 -12.06803 -11.87088 -11.63626 -11.58570 -11.36679 -11.30984 -11.17777 -11.03669 -10.81522 -10.54232 -9.79586 -9.68531 -8.80285 -8.16136 -6.33298 0.42191 0.54483 1.44841 1.45537 1.55724 1.83968 2.24574 2.42362 2.94935 3.13317 3.49141 3.84529 3.95953 4.09842 4.11215 4.16947 4.32649 4.41514 4.48966 4.55573 4.56768 4.65918 4.69498 4.75762 4.78471 4.86342 4.89946 4.92967 5.04241 5.05157 5.11818 5.15683 5.20976 5.25020 5.28753 5.40461 5.42490 5.43542 5.46076 5.54240 5.55077 5.59481 5.61099 5.70316 5.77005 5.81521 5.88471 6.16417 6.20749 6.31563 6.74711 7.27223 7.35309 7.73868 8.89310 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.026569 B = 0.002150 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.616819 B =13019.209548 C =13148.686377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.121 4.121 3 C 0.297 3.703 4 H -0.002 1.002 5 C -0.547 4.547 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.914 5.914 9 Si 0.971 3.029 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.266 1.266 13 N -0.716 5.716 14 C 0.692 3.308 15 O -0.613 6.613 16 N -0.680 5.680 17 C 0.151 3.849 18 C -0.145 4.145 19 C -0.106 4.106 20 C -0.104 4.104 21 C -0.073 4.073 22 C -0.104 4.104 23 C -0.096 4.096 24 C -0.148 4.148 25 C -0.152 4.152 26 C -0.095 4.095 27 C -0.146 4.146 28 H 0.040 0.960 29 H 0.024 0.976 30 H 0.043 0.957 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.265 0.735 34 H 0.401 0.599 35 H 0.419 0.581 36 H 0.100 0.900 37 H 0.126 0.874 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.077 0.923 43 H 0.048 0.952 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.048 0.952 47 H 0.057 0.943 48 H 0.057 0.943 49 H 0.154 0.846 50 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.598 13.161 16.350 26.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.160 4.160 3 C 0.193 3.807 4 H 0.016 0.984 5 C -0.585 4.585 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.552 5.552 9 Si 0.796 3.204 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.190 1.190 13 N -0.368 5.368 14 C 0.392 3.608 15 O -0.493 6.493 16 N -0.330 5.330 17 C 0.056 3.944 18 C -0.166 4.166 19 C -0.125 4.125 20 C -0.105 4.105 21 C -0.110 4.110 22 C -0.142 4.142 23 C -0.114 4.114 24 C -0.205 4.205 25 C -0.209 4.209 26 C -0.113 4.113 27 C -0.167 4.167 28 H 0.059 0.941 29 H 0.043 0.957 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.236 0.764 35 H 0.257 0.743 36 H 0.118 0.882 37 H 0.144 0.856 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.172 0.828 50 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -16.174 12.998 15.275 25.766 hybrid contribution 1.725 -0.269 -0.268 1.766 sum -14.450 12.729 15.007 24.414 Atomic orbital electron populations 1.21634 0.97124 0.98843 1.00081 1.21808 0.93576 0.99295 1.01330 1.18265 0.93475 0.88792 0.80176 0.98417 1.21550 0.91262 1.38981 1.06736 0.91014 1.25769 1.03323 0.94417 0.95005 1.70049 1.37045 1.38250 1.09873 0.85355 0.79073 0.78832 0.77114 1.19636 1.21321 1.18995 1.45450 1.13814 1.59083 1.18479 1.16203 0.82922 0.78605 0.83062 1.90889 1.52714 1.65660 1.40052 1.42559 1.20931 1.55389 1.14077 1.17771 0.86899 0.94061 0.95679 1.21125 0.98501 0.98624 0.98374 1.21012 0.94025 0.98975 0.98498 1.20085 0.97917 0.99552 0.92956 1.20628 0.92623 0.94794 1.02955 1.21596 0.97201 0.93851 1.01508 1.21132 0.96517 0.96359 0.97385 1.21844 1.01679 0.96112 1.00889 1.21917 1.00538 1.01901 0.96543 1.21125 0.94886 0.96323 0.99002 1.21104 0.95809 1.03001 0.96788 0.94138 0.95701 0.93786 0.90866 0.94010 0.92578 0.76398 0.74345 0.88222 0.85642 0.90955 0.89706 0.91600 0.92965 0.90502 0.93244 0.92257 0.92437 0.93296 0.92386 0.92362 0.82834 0.83402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.51 71.98 0.61 -4.95 16 2 C -0.12 -6.02 5.45 30.60 0.17 -5.86 16 3 C 0.30 15.28 2.24 44.25 0.10 15.38 16 4 H 0.00 -0.13 7.58 -2.39 -0.02 -0.15 16 5 C -0.55 -28.83 8.73 25.60 0.22 -28.61 16 6 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 7 C 0.02 0.81 5.29 84.66 0.45 1.26 16 8 N -0.91 -52.28 11.29 21.45 0.24 -52.03 16 9 Si 0.97 41.99 29.54 68.60 2.03 44.02 16 10 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 11 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 13 N -0.72 -29.69 5.03 -461.41 -2.32 -32.01 16 14 C 0.69 28.27 6.87 179.06 1.23 29.50 16 15 O -0.61 -30.15 11.17 -3.99 -0.04 -30.19 16 16 N -0.68 -20.91 5.35 -317.19 -1.70 -22.61 16 17 C 0.15 4.56 6.28 38.14 0.24 4.80 16 18 C -0.15 -4.90 8.65 22.39 0.19 -4.70 16 19 C -0.11 -2.88 9.69 22.25 0.22 -2.67 16 20 C -0.10 -2.21 5.14 -19.84 -0.10 -2.32 16 21 C -0.07 -1.11 5.10 29.85 0.15 -0.96 16 22 C -0.10 -1.44 4.67 30.59 0.14 -1.30 16 23 C -0.10 -1.10 2.92 -10.79 -0.03 -1.14 16 24 C -0.15 -1.62 9.19 71.99 0.66 -0.96 16 25 C -0.15 -1.82 8.95 71.98 0.64 -1.17 16 26 C -0.10 -1.85 9.69 22.25 0.22 -1.63 16 27 C -0.15 -3.29 9.96 22.39 0.22 -3.07 16 28 H 0.04 1.84 5.65 -2.38 -0.01 1.83 16 29 H 0.02 1.24 7.84 -2.39 -0.02 1.22 16 30 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.07 4.06 5.95 -2.39 -0.01 4.05 16 32 H 0.04 1.94 8.14 -2.39 -0.02 1.93 16 33 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 34 H 0.40 13.86 8.56 -92.71 -0.79 13.07 16 35 H 0.42 9.48 8.83 -92.71 -0.82 8.67 16 36 H 0.10 4.07 6.42 -2.91 -0.02 4.05 16 37 H 0.13 3.08 8.06 -2.91 -0.02 3.06 16 38 H 0.07 1.12 6.51 -2.39 -0.02 1.10 16 39 H 0.08 1.04 8.08 -2.38 -0.02 1.02 16 40 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 47 H 0.06 0.70 6.57 -2.39 -0.02 0.68 16 48 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 50 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -67.51 394.65 2.86 -64.65 By element: Atomic # 1 Polarization: 37.23 SS G_CDS: -0.68 Total: 36.55 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: 5.33 Total: -8.37 kcal Atomic # 7 Polarization: -102.88 SS G_CDS: -3.77 Total: -106.66 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.04 Total: -30.19 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -67.51 2.86 -64.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548442314.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.712 kcal (2) G-P(sol) polarization free energy of solvation -67.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds