Wall clock time and date at job start Tue Mar 31 2020 12:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47252 * 2 1 4 4 H 1.09002 * 109.47507 * 179.81467 * 3 2 1 5 5 C 1.50701 * 109.47438 * 299.81939 * 3 2 1 6 6 H 1.07999 * 119.99950 * 116.03164 * 5 3 2 7 7 C 1.37874 * 119.99949 * 296.03057 * 5 3 2 8 8 N 1.31513 * 119.99993 * 353.67813 * 7 5 3 9 9 Si 1.86803 * 120.00198 * 173.68276 * 7 5 3 10 10 H 1.48497 * 109.47167 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.46771 * 299.99965 * 9 7 5 12 12 H 1.48500 * 109.46985 * 59.99581 * 9 7 5 13 13 N 1.46902 * 109.46852 * 59.82173 * 3 2 1 14 14 C 1.46895 * 111.00447 * 88.46034 * 13 3 2 15 15 C 1.50697 * 109.47516 * 185.18456 * 14 13 3 16 16 O 1.21284 * 119.99777 * 359.97438 * 15 14 13 17 17 N 1.34771 * 120.00102 * 180.02562 * 15 14 13 18 18 C 1.46510 * 119.99836 * 179.97438 * 17 15 14 19 19 H 1.09000 * 109.46896 * 324.99820 * 18 17 15 20 20 C 1.53001 * 109.46895 * 84.99719 * 18 17 15 21 21 C 1.52996 * 109.46902 * 204.99670 * 18 17 15 22 22 C 1.50700 * 109.47252 * 65.00233 * 21 18 17 23 23 C 1.38266 * 119.99811 * 264.99845 * 22 21 18 24 24 C 1.38210 * 119.99660 * 179.97438 * 23 22 21 25 25 C 1.38257 * 120.00122 * 0.02635 * 24 23 22 26 26 C 1.38201 * 120.00190 * 359.97255 * 25 24 23 27 27 C 1.38208 * 120.00321 * 84.72386 * 22 21 18 28 28 C 1.50701 * 119.99915 * 359.97438 * 27 22 21 29 29 H 1.09002 * 109.46843 * 305.06056 * 1 2 3 30 30 H 1.08999 * 109.47398 * 65.05781 * 1 2 3 31 31 H 1.08998 * 109.47266 * 185.06455 * 1 2 3 32 32 H 1.09007 * 109.47031 * 240.00113 * 2 1 3 33 33 H 1.08999 * 109.47311 * 120.00837 * 2 1 3 34 34 H 0.96997 * 120.00436 * 355.17325 * 8 7 5 35 35 H 1.00904 * 110.99982 * 212.41592 * 13 3 2 36 36 H 1.09003 * 109.47166 * 305.18742 * 14 13 3 37 37 H 1.09005 * 109.46986 * 65.18289 * 14 13 3 38 38 H 0.96996 * 120.00524 * 359.97438 * 17 15 14 39 39 H 1.09004 * 109.46819 * 179.97438 * 20 18 17 40 40 H 1.08996 * 109.47314 * 299.99692 * 20 18 17 41 41 H 1.09000 * 109.47266 * 60.00328 * 20 18 17 42 42 H 1.08998 * 109.47086 * 184.99866 * 21 18 17 43 43 H 1.09000 * 109.47584 * 305.00065 * 21 18 17 44 44 H 1.07994 * 119.99783 * 0.02562 * 23 22 21 45 45 H 1.08005 * 119.99648 * 179.97438 * 24 23 22 46 46 H 1.08002 * 119.99807 * 179.97438 * 25 24 23 47 47 H 1.08004 * 120.00123 * 179.97438 * 26 25 24 48 48 H 1.08997 * 109.47070 * 89.99803 * 28 27 22 49 49 H 1.08999 * 109.47422 * 209.99508 * 28 27 22 50 50 H 1.09003 * 109.47106 * 330.00254 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1300 1.4425 0.0033 5 6 1.5414 2.1516 -1.2327 6 1 0.8684 2.9910 -1.1377 7 6 1.9443 1.7289 -2.4816 8 7 2.8580 0.7899 -2.5949 9 14 1.1925 2.4902 -4.0129 10 1 1.7915 1.8673 -5.2205 11 1 -0.2743 2.2585 -4.0117 12 1 1.4630 3.9503 -4.0237 13 7 1.5468 2.1361 1.1973 14 6 2.4699 1.9590 2.3262 15 6 1.8719 2.5738 3.5654 16 8 0.7840 3.1074 3.5131 17 7 2.5465 2.5315 4.7313 18 6 1.9653 3.1297 5.9359 19 1 1.3999 4.0206 5.6626 20 6 1.0326 2.1198 6.6077 21 6 3.0848 3.5135 6.9056 22 6 3.9319 4.5978 6.2910 23 6 5.0872 4.2681 5.6067 24 6 5.8638 5.2625 5.0426 25 6 5.4858 6.5869 5.1631 26 6 4.3310 6.9165 5.8470 27 6 3.5511 5.9213 6.4065 28 6 2.2883 6.2802 7.1466 29 1 -0.3633 0.5904 0.8412 30 1 -0.3634 0.4334 -0.9318 31 1 -0.3634 -1.0236 0.0907 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 3.2989 0.4441 -1.8032 35 1 1.3894 3.1149 1.0091 36 1 2.6392 0.8953 2.4937 37 1 3.4182 2.4466 2.1000 38 1 3.4167 2.1051 4.7731 39 1 0.6006 2.5647 7.5041 40 1 0.2351 1.8463 5.9169 41 1 1.5981 1.2289 6.8810 42 1 2.6501 3.8762 7.8370 43 1 3.7043 2.6402 7.1095 44 1 5.3822 3.2335 5.5123 45 1 6.7665 5.0050 4.5084 46 1 6.0929 7.3640 4.7226 47 1 4.0359 7.9511 5.9415 48 1 2.5183 6.4442 8.1993 49 1 1.8640 7.1898 6.7215 50 1 1.5693 5.4662 7.0543 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577384621.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:31 Heat of formation + Delta-G solvation = -34.178014 kcal Electronic energy + Delta-G solvation = -27064.441786 eV Core-core repulsion = 23476.447179 eV Total energy + Delta-G solvation = -3587.994606 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.18154 -39.16779 -36.57354 -35.80767 -33.24169 -32.70578 -32.08244 -30.91382 -30.41671 -27.55875 -27.00750 -26.32233 -24.44030 -23.40097 -22.38408 -21.74744 -20.62870 -20.22875 -19.22316 -17.45978 -16.66368 -16.50380 -16.15809 -15.47145 -15.29863 -15.05541 -14.40250 -14.11679 -13.89529 -13.83690 -13.69331 -13.36354 -13.28166 -13.15918 -12.96340 -12.58697 -12.56065 -12.27809 -12.26348 -12.10053 -11.95197 -11.64179 -11.56143 -11.19582 -11.09787 -11.04812 -10.94511 -10.77010 -10.14387 -10.07774 -9.99166 -9.66800 -9.37328 -8.99171 -8.95349 -8.69917 -8.48967 -8.32599 -7.36346 -6.34098 -4.05431 1.17928 1.22659 3.01453 3.28228 3.45817 3.48269 3.56478 3.66164 4.45291 4.53852 4.57934 4.68609 4.75775 4.84701 4.99058 5.09559 5.15196 5.19648 5.27242 5.31091 5.37157 5.40081 5.41442 5.49019 5.53592 5.58325 5.61955 5.79251 5.83566 5.87610 5.89551 6.02645 6.13084 6.31092 6.31658 6.35664 6.44586 6.49841 6.62655 6.65543 6.85195 6.96907 7.06862 7.30149 7.49480 7.59645 7.66081 7.89305 8.10702 8.49255 8.56598 8.61897 8.87653 9.64358 11.02285 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.014688 B = 0.003048 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.913855 B = 9183.370987 C =10137.340262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.106 4.106 3 C 0.205 3.795 4 H -0.007 1.007 5 C -0.594 4.594 6 H 0.054 0.946 7 C 0.025 3.975 8 N -0.911 5.911 9 Si 1.064 2.936 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.289 1.289 13 N -0.661 5.661 14 C 0.043 3.957 15 C 0.516 3.484 16 O -0.523 6.523 17 N -0.732 5.732 18 C 0.148 3.852 19 H 0.088 0.912 20 C -0.164 4.164 21 C -0.089 4.089 22 C -0.080 4.080 23 C -0.111 4.111 24 C -0.123 4.123 25 C -0.120 4.120 26 C -0.119 4.119 27 C -0.082 4.082 28 C -0.120 4.120 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.016 0.984 32 H 0.062 0.938 33 H 0.016 0.984 34 H 0.270 0.730 35 H 0.343 0.657 36 H 0.090 0.910 37 H 0.046 0.954 38 H 0.395 0.605 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.120 0.880 48 H 0.069 0.931 49 H 0.066 0.934 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.986 7.013 22.297 23.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.144 4.144 3 C 0.097 3.903 4 H 0.010 0.990 5 C -0.632 4.632 6 H 0.073 0.927 7 C -0.180 4.180 8 N -0.547 5.547 9 Si 0.893 3.107 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.216 1.216 13 N -0.294 5.294 14 C -0.091 4.091 15 C 0.303 3.697 16 O -0.397 6.397 17 N -0.387 5.387 18 C 0.043 3.957 19 H 0.106 0.894 20 C -0.222 4.222 21 C -0.127 4.127 22 C -0.080 4.080 23 C -0.129 4.129 24 C -0.141 4.141 25 C -0.139 4.139 26 C -0.137 4.137 27 C -0.082 4.082 28 C -0.176 4.176 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.035 0.965 32 H 0.080 0.920 33 H 0.035 0.965 34 H 0.081 0.919 35 H 0.162 0.838 36 H 0.108 0.892 37 H 0.064 0.936 38 H 0.228 0.772 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.138 0.862 48 H 0.088 0.912 49 H 0.085 0.915 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.740 6.802 20.767 22.170 hybrid contribution 1.369 0.424 1.404 2.006 sum 5.109 7.225 22.172 23.872 Atomic orbital electron populations 1.21425 0.96438 0.97579 1.02348 1.21493 0.96449 0.98136 0.98357 1.19266 0.92386 0.91585 0.87058 0.98961 1.21984 1.31656 1.17834 0.91731 0.92737 1.25691 0.95624 0.95554 1.01113 1.70794 1.23682 1.26616 1.33603 0.83615 0.75950 0.75503 0.75677 1.20881 1.21313 1.21566 1.60300 1.45042 1.18573 1.05466 1.21796 0.95158 1.00953 0.91143 1.20966 0.85382 0.79032 0.84367 1.90667 1.20439 1.43299 1.85322 1.46090 1.22718 1.60911 1.08933 1.20850 0.93465 0.96867 0.84492 0.89361 1.22199 1.00060 0.99249 1.00731 1.20949 0.96411 0.97019 0.98333 1.19636 0.95621 0.93696 0.99062 1.20991 0.94752 0.99180 0.97935 1.21129 0.99983 0.93055 0.99890 1.21125 0.97026 0.96508 0.99192 1.21019 0.95209 0.98895 0.98594 1.19760 0.96805 0.92752 0.98885 1.20883 0.94706 1.02497 0.99551 0.92696 0.92586 0.96498 0.91991 0.96480 0.91888 0.83844 0.89226 0.93620 0.77165 0.91901 0.91587 0.92491 0.89398 0.90464 0.86306 0.86136 0.86229 0.86239 0.91218 0.91484 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.77 9.48 37.16 0.35 -2.42 16 2 C -0.11 -2.52 5.51 -26.74 -0.15 -2.67 16 3 C 0.20 5.09 1.94 -68.87 -0.13 4.95 16 4 H -0.01 -0.19 7.22 -51.93 -0.38 -0.56 16 5 C -0.59 -16.34 7.35 -34.44 -0.25 -16.60 16 6 H 0.05 1.53 7.61 -52.49 -0.40 1.13 16 7 C 0.02 0.69 5.24 -17.82 -0.09 0.60 16 8 N -0.91 -26.75 12.83 55.43 0.71 -26.04 16 9 Si 1.06 25.16 29.91 -169.99 -5.08 20.08 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 13 N -0.66 -14.60 4.99 -109.22 -0.54 -15.15 16 14 C 0.04 0.76 5.93 -4.98 -0.03 0.73 16 15 C 0.52 8.58 7.85 -10.99 -0.09 8.49 16 16 O -0.52 -10.71 15.98 5.55 0.09 -10.62 16 17 N -0.73 -8.81 4.67 -53.80 -0.25 -9.06 16 18 C 0.15 1.57 2.31 -67.93 -0.16 1.41 16 19 H 0.09 1.15 6.43 -51.93 -0.33 0.81 16 20 C -0.16 -1.61 9.48 37.16 0.35 -1.26 16 21 C -0.09 -0.72 4.19 -27.89 -0.12 -0.84 16 22 C -0.08 -0.79 4.89 -104.62 -0.51 -1.30 16 23 C -0.11 -1.08 9.36 -39.58 -0.37 -1.45 16 24 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 25 C -0.12 -1.21 10.05 -39.59 -0.40 -1.60 16 26 C -0.12 -1.20 9.70 -39.59 -0.38 -1.58 16 27 C -0.08 -0.83 5.88 -104.62 -0.62 -1.44 16 28 C -0.12 -0.97 9.22 36.01 0.33 -0.64 16 29 H 0.05 1.27 7.44 -51.93 -0.39 0.88 16 30 H 0.06 1.38 7.41 -51.93 -0.38 0.99 16 31 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 1.61 6.18 -51.93 -0.32 1.29 16 33 H 0.02 0.37 7.63 -51.93 -0.40 -0.03 16 34 H 0.27 7.87 6.06 -40.82 -0.25 7.62 16 35 H 0.34 7.96 8.06 -39.29 -0.32 7.65 16 36 H 0.09 1.50 7.59 -51.93 -0.39 1.11 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.39 3.79 8.35 -40.82 -0.34 3.45 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.59 7.01 -51.93 -0.36 0.23 16 43 H 0.08 0.52 8.05 -51.93 -0.42 0.10 16 44 H 0.12 0.94 8.00 -52.49 -0.42 0.52 16 45 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 46 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 47 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 48 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 49 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 50 H 0.07 0.58 5.46 -51.93 -0.28 0.30 16 LS Contribution 397.75 15.07 5.99 5.99 Total: -1.00 -32.40 397.75 -10.15 -42.55 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -8.40 Total: 9.49 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -2.66 Total: -17.24 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: -0.09 Total: -50.25 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.09 Total: -10.62 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -5.08 Total: 20.08 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.40 -10.15 -42.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577384621.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.368 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds