Wall clock time and date at job start Tue Mar 31 2020 12:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47161 * 2 1 4 4 H 1.09005 * 109.47111 * 54.86935 * 3 2 1 5 5 C 1.50701 * 109.47030 * 174.86982 * 3 2 1 6 6 H 1.08001 * 120.00237 * 120.00593 * 5 3 2 7 7 C 1.37876 * 119.99992 * 299.99894 * 5 3 2 8 8 N 1.31514 * 120.00240 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00215 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47067 * 59.99971 * 9 7 5 11 11 H 1.48498 * 109.47427 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46726 * 300.00271 * 9 7 5 13 13 N 1.46895 * 109.47254 * 294.86988 * 3 2 1 14 14 C 1.46905 * 111.00121 * 153.77423 * 13 3 2 15 15 C 1.50699 * 109.47019 * 185.38256 * 14 13 3 16 16 O 1.21288 * 120.00290 * 0.02562 * 15 14 13 17 17 N 1.34776 * 119.99772 * 179.97438 * 15 14 13 18 18 C 1.39923 * 119.99928 * 175.13151 * 17 15 14 19 19 C 1.38900 * 120.07130 * 308.31178 * 18 17 15 20 20 C 1.50699 * 120.03465 * 359.97438 * 19 18 17 21 21 C 1.38087 * 119.92470 * 179.72199 * 19 18 17 22 22 C 1.38305 * 120.07599 * 0.52923 * 21 19 18 23 23 C 1.38259 * 120.13645 * 359.76925 * 22 21 19 24 24 C 1.38133 * 120.07261 * 359.95290 * 23 22 21 25 25 C 1.50700 * 120.03289 * 180.02562 * 24 23 22 26 26 C 1.53003 * 109.47228 * 300.02240 * 25 24 23 27 27 C 1.52999 * 109.47358 * 60.02538 * 25 24 23 28 28 H 1.08998 * 109.47582 * 65.08691 * 1 2 3 29 29 H 1.09006 * 109.47333 * 185.08840 * 1 2 3 30 30 H 1.09002 * 109.47579 * 305.08453 * 1 2 3 31 31 H 1.09002 * 109.47346 * 240.00246 * 2 1 3 32 32 H 1.09001 * 109.47197 * 120.00077 * 2 1 3 33 33 H 0.96997 * 120.00323 * 180.02562 * 8 7 5 34 34 H 1.00903 * 111.00054 * 277.72706 * 13 3 2 35 35 H 1.08995 * 109.46646 * 305.38556 * 14 13 3 36 36 H 1.08997 * 109.46998 * 65.38219 * 14 13 3 37 37 H 0.97001 * 120.00081 * 355.13746 * 17 15 14 38 38 H 1.08993 * 109.47262 * 97.78687 * 20 19 18 39 39 H 1.08999 * 109.46830 * 217.78899 * 20 19 18 40 40 H 1.08999 * 109.47170 * 337.78617 * 20 19 18 41 41 H 1.08005 * 119.96106 * 180.25689 * 21 19 18 42 42 H 1.07997 * 119.92779 * 179.74396 * 22 21 19 43 43 H 1.07999 * 119.96258 * 179.97438 * 23 22 21 44 44 H 1.08995 * 109.46952 * 180.02562 * 25 24 23 45 45 H 1.08995 * 109.47066 * 60.00178 * 26 25 24 46 46 H 1.09001 * 109.46987 * 180.02562 * 26 25 24 47 47 H 1.09000 * 109.46996 * 300.00016 * 26 25 24 48 48 H 1.08999 * 109.46884 * 59.99645 * 27 25 24 49 49 H 1.08996 * 109.47258 * 180.02562 * 27 25 24 50 50 H 1.09004 * 109.46668 * 299.99840 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6035 1.9822 0.8405 5 6 3.5416 1.4444 0.1270 6 1 4.1486 1.8884 -0.6481 7 6 4.1406 0.8793 1.2329 8 7 3.4015 0.3382 2.1766 9 14 6.0019 0.8822 1.3908 10 1 6.4965 2.2825 1.3911 11 1 6.3921 0.2186 2.6607 12 1 6.5969 0.1474 0.2457 13 7 1.6540 2.0983 -1.2565 14 6 1.5466 3.5528 -1.0799 15 6 1.0229 4.1755 -2.3483 16 8 0.7642 3.4765 -3.3052 17 7 0.8411 5.5090 -2.4192 18 6 0.4527 6.0990 -3.6270 19 6 1.1622 5.8333 -4.7912 20 6 2.3522 4.9095 -4.7551 21 6 0.7727 6.4127 -5.9826 22 6 -0.3158 7.2652 -6.0156 23 6 -1.0204 7.5364 -4.8573 24 6 -0.6394 6.9556 -3.6633 25 6 -1.4083 7.2515 -2.4015 26 6 -1.3587 8.7535 -2.1143 27 6 -2.8638 6.8136 -2.5766 28 1 -0.3634 0.4329 -0.9320 29 1 -0.3634 -1.0237 0.0911 30 1 -0.3634 0.5907 0.8409 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8229 -0.0590 2.9548 34 1 2.3010 1.8708 -1.9967 35 1 0.8626 3.7695 -0.2594 36 1 2.5296 3.9646 -0.8518 37 1 0.9797 6.0599 -1.6328 38 1 2.0480 3.9125 -5.0738 39 1 3.1246 5.2855 -5.4260 40 1 2.7448 4.8622 -3.7394 41 1 1.3215 6.2032 -6.8890 42 1 -0.6158 7.7202 -6.9479 43 1 -1.8697 8.2029 -4.8862 44 1 -0.9629 6.7075 -1.5686 45 1 -1.8041 9.2976 -2.9471 46 1 -1.9145 8.9674 -1.2013 47 1 -0.3218 9.0655 -1.9894 48 1 -2.8991 5.7435 -2.7812 49 1 -3.4201 7.0280 -1.6641 50 1 -3.3092 7.3577 -3.4095 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581140490.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:43 Heat of formation + Delta-G solvation = -27.171039 kcal Electronic energy + Delta-G solvation = -27344.607213 eV Core-core repulsion = 23756.916452 eV Total energy + Delta-G solvation = -3587.690761 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.74654 -38.64269 -36.02051 -35.75054 -34.49384 -32.52496 -31.77299 -31.09717 -29.43718 -27.34127 -27.30771 -26.70336 -24.95783 -23.28805 -22.67912 -21.72842 -20.18509 -19.59429 -19.46183 -17.73267 -16.89041 -16.60445 -16.00447 -15.53994 -14.81418 -14.78615 -14.39626 -14.15635 -13.87398 -13.84448 -13.56908 -13.47724 -13.25778 -13.10913 -12.60849 -12.46023 -12.31249 -12.14026 -12.00388 -11.97636 -11.72476 -11.40390 -11.25119 -11.20658 -11.16603 -10.93324 -10.87316 -10.77846 -10.68068 -10.20671 -9.90713 -9.75950 -9.58233 -9.31620 -9.09579 -8.58187 -8.42094 -8.18209 -7.31527 -6.04232 -4.18223 1.27196 1.35465 2.95629 3.23950 3.25409 3.30768 3.33201 3.71185 4.35405 4.48029 4.63719 4.91767 5.00566 5.02613 5.05770 5.19721 5.22365 5.25816 5.41222 5.44459 5.45716 5.54841 5.60495 5.65137 5.77207 5.83985 5.86032 5.88426 5.95224 6.02180 6.08537 6.09418 6.32574 6.41823 6.41949 6.42772 6.53330 6.55475 6.63996 6.73382 7.06730 7.08305 7.20282 7.37997 7.49576 7.59812 7.73936 8.04500 8.07132 8.25934 8.48550 8.60625 8.93959 9.49871 10.95607 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.015970 B = 0.003129 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.880141 B = 8947.784073 C = 9425.902298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 C 0.217 3.783 4 H 0.033 0.967 5 C -0.550 4.550 6 H 0.053 0.947 7 C 0.069 3.931 8 N -0.883 5.883 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.671 5.671 14 C 0.052 3.948 15 C 0.511 3.489 16 O -0.504 6.504 17 N -0.687 5.687 18 C 0.152 3.848 19 C -0.073 4.073 20 C -0.109 4.109 21 C -0.114 4.114 22 C -0.127 4.127 23 C -0.111 4.111 24 C -0.089 4.089 25 C -0.057 4.057 26 C -0.143 4.143 27 C -0.141 4.141 28 H 0.048 0.952 29 H 0.025 0.975 30 H 0.035 0.965 31 H 0.032 0.968 32 H 0.091 0.909 33 H 0.263 0.737 34 H 0.337 0.663 35 H 0.091 0.909 36 H 0.059 0.941 37 H 0.406 0.594 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.078 0.922 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.055 0.945 48 H 0.057 0.943 49 H 0.057 0.943 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.218 16.478 -10.308 21.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.143 4.143 3 C 0.109 3.891 4 H 0.051 0.949 5 C -0.589 4.589 6 H 0.071 0.929 7 C -0.134 4.134 8 N -0.521 5.521 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.301 5.301 14 C -0.082 4.082 15 C 0.299 3.701 16 O -0.376 6.376 17 N -0.337 5.337 18 C 0.058 3.942 19 C -0.075 4.075 20 C -0.165 4.165 21 C -0.133 4.133 22 C -0.145 4.145 23 C -0.130 4.130 24 C -0.091 4.091 25 C -0.075 4.075 26 C -0.200 4.200 27 C -0.199 4.199 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.109 0.891 33 H 0.073 0.927 34 H 0.154 0.846 35 H 0.109 0.891 36 H 0.077 0.923 37 H 0.242 0.758 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.096 0.904 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.076 0.924 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.036 15.674 -10.664 21.001 hybrid contribution 2.087 0.536 0.610 2.239 sum -6.949 16.210 -10.054 20.301 Atomic orbital electron populations 1.21695 0.98936 0.98369 1.00424 1.21481 0.92172 0.98936 1.01759 1.19196 0.92887 0.91446 0.85522 0.94935 1.21827 0.92657 1.38835 1.05613 0.92869 1.24920 0.97957 0.94829 0.95652 1.69864 1.34969 1.37919 1.09365 0.86708 0.85953 0.78192 0.77436 1.20401 1.21199 1.20226 1.60633 1.55721 1.03366 1.10425 1.21651 1.00386 0.92887 0.93226 1.21351 0.77060 0.80673 0.90998 1.90681 1.47688 1.60802 1.38416 1.43686 1.70389 1.08337 1.11268 1.17312 0.94022 0.96315 0.86513 1.19881 0.96877 0.98104 0.92606 1.20868 0.94282 0.99150 1.02232 1.20860 0.97705 0.97748 0.96963 1.21035 0.96326 0.99130 0.98050 1.20728 1.00051 1.00461 0.91754 1.19783 0.94333 0.99243 0.95744 1.20054 0.95763 0.96828 0.94894 1.21862 1.01916 0.94684 1.01547 1.21818 0.94656 1.01779 1.01607 0.93329 0.95617 0.94534 0.94938 0.89076 0.92736 0.84571 0.89066 0.92317 0.75767 0.89589 0.92364 0.92186 0.86047 0.86238 0.86144 0.90415 0.92489 0.92340 0.92605 0.92381 0.92386 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.74 37.15 0.36 -2.52 16 2 C -0.10 -2.51 5.45 -26.73 -0.15 -2.66 16 3 C 0.22 5.22 1.98 -68.87 -0.14 5.08 16 4 H 0.03 0.85 7.69 -51.93 -0.40 0.45 16 5 C -0.55 -14.36 8.49 -34.44 -0.29 -14.65 16 6 H 0.05 1.38 7.72 -52.49 -0.41 0.97 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.31 11.29 55.43 0.63 -23.69 16 9 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 13 N -0.67 -14.10 5.33 -109.22 -0.58 -14.68 16 14 C 0.05 0.91 6.00 -4.97 -0.03 0.88 16 15 C 0.51 8.36 5.98 -10.99 -0.07 8.29 16 16 O -0.50 -9.84 13.40 5.55 0.07 -9.77 16 17 N -0.69 -8.99 3.99 -9.86 -0.04 -9.03 16 18 C 0.15 2.04 5.85 -83.69 -0.49 1.55 16 19 C -0.07 -0.99 5.48 -104.43 -0.57 -1.56 16 20 C -0.11 -1.52 8.22 36.01 0.30 -1.22 16 21 C -0.11 -1.34 9.73 -39.61 -0.39 -1.72 16 22 C -0.13 -1.32 10.04 -39.55 -0.40 -1.71 16 23 C -0.11 -1.16 8.71 -39.61 -0.35 -1.50 16 24 C -0.09 -1.03 4.80 -104.43 -0.50 -1.53 16 25 C -0.06 -0.55 3.04 -91.77 -0.28 -0.83 16 26 C -0.14 -1.12 9.01 37.16 0.33 -0.78 16 27 C -0.14 -1.33 9.01 37.16 0.33 -0.99 16 28 H 0.05 1.01 7.90 -51.93 -0.41 0.60 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.09 2.41 5.95 -51.93 -0.31 2.10 16 33 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.34 7.33 8.29 -39.29 -0.33 7.00 16 35 H 0.09 1.51 7.92 -51.93 -0.41 1.10 16 36 H 0.06 1.02 8.13 -51.93 -0.42 0.60 16 37 H 0.41 4.22 8.07 -40.82 -0.33 3.89 16 38 H 0.09 1.36 7.08 -51.93 -0.37 0.99 16 39 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 40 H 0.06 0.89 6.14 -51.93 -0.32 0.57 16 41 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 42 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.12 1.00 7.10 -52.49 -0.37 0.63 16 44 H 0.08 0.78 6.45 -51.93 -0.33 0.45 16 45 H 0.06 0.41 7.39 -51.93 -0.38 0.03 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 50 H 0.06 0.47 7.39 -51.93 -0.38 0.09 16 LS Contribution 394.45 15.07 5.94 5.94 Total: -1.00 -29.40 394.45 -9.94 -39.34 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -8.54 Total: 10.41 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -2.41 Total: -14.14 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.00 Total: -47.39 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.07 Total: -9.77 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.40 -9.94 -39.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581140490.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.171 kcal (2) G-P(sol) polarization free energy of solvation -29.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds