Wall clock time and date at job start Tue Mar 31 2020 12:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47161 * 2 1 4 4 H 1.09005 * 109.47111 * 54.86935 * 3 2 1 5 5 C 1.50701 * 109.47030 * 174.86982 * 3 2 1 6 6 H 1.08001 * 120.00237 * 120.00593 * 5 3 2 7 7 C 1.37876 * 119.99992 * 299.99894 * 5 3 2 8 8 N 1.31514 * 120.00240 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00215 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47067 * 59.99971 * 9 7 5 11 11 H 1.48498 * 109.47427 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46726 * 300.00271 * 9 7 5 13 13 N 1.46895 * 109.47254 * 294.86988 * 3 2 1 14 14 C 1.46905 * 111.00121 * 153.77423 * 13 3 2 15 15 C 1.50699 * 109.47019 * 185.38256 * 14 13 3 16 16 O 1.21288 * 120.00290 * 0.02562 * 15 14 13 17 17 N 1.34776 * 119.99772 * 179.97438 * 15 14 13 18 18 C 1.39923 * 119.99928 * 175.13151 * 17 15 14 19 19 C 1.38900 * 120.07130 * 308.31178 * 18 17 15 20 20 C 1.50699 * 120.03465 * 359.97438 * 19 18 17 21 21 C 1.38087 * 119.92470 * 179.72199 * 19 18 17 22 22 C 1.38305 * 120.07599 * 0.52923 * 21 19 18 23 23 C 1.38259 * 120.13645 * 359.76925 * 22 21 19 24 24 C 1.38133 * 120.07261 * 359.95290 * 23 22 21 25 25 C 1.50700 * 120.03289 * 180.02562 * 24 23 22 26 26 C 1.53003 * 109.47228 * 300.02240 * 25 24 23 27 27 C 1.52999 * 109.47358 * 60.02538 * 25 24 23 28 28 H 1.08998 * 109.47582 * 65.08691 * 1 2 3 29 29 H 1.09006 * 109.47333 * 185.08840 * 1 2 3 30 30 H 1.09002 * 109.47579 * 305.08453 * 1 2 3 31 31 H 1.09002 * 109.47346 * 240.00246 * 2 1 3 32 32 H 1.09001 * 109.47197 * 120.00077 * 2 1 3 33 33 H 0.96997 * 120.00323 * 180.02562 * 8 7 5 34 34 H 1.00903 * 111.00054 * 277.72706 * 13 3 2 35 35 H 1.08995 * 109.46646 * 305.38556 * 14 13 3 36 36 H 1.08997 * 109.46998 * 65.38219 * 14 13 3 37 37 H 0.97001 * 120.00081 * 355.13746 * 17 15 14 38 38 H 1.08993 * 109.47262 * 97.78687 * 20 19 18 39 39 H 1.08999 * 109.46830 * 217.78899 * 20 19 18 40 40 H 1.08999 * 109.47170 * 337.78617 * 20 19 18 41 41 H 1.08005 * 119.96106 * 180.25689 * 21 19 18 42 42 H 1.07997 * 119.92779 * 179.74396 * 22 21 19 43 43 H 1.07999 * 119.96258 * 179.97438 * 23 22 21 44 44 H 1.08995 * 109.46952 * 180.02562 * 25 24 23 45 45 H 1.08995 * 109.47066 * 60.00178 * 26 25 24 46 46 H 1.09001 * 109.46987 * 180.02562 * 26 25 24 47 47 H 1.09000 * 109.46996 * 300.00016 * 26 25 24 48 48 H 1.08999 * 109.46884 * 59.99645 * 27 25 24 49 49 H 1.08996 * 109.47258 * 180.02562 * 27 25 24 50 50 H 1.09004 * 109.46668 * 299.99840 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6035 1.9822 0.8405 5 6 3.5416 1.4444 0.1270 6 1 4.1486 1.8884 -0.6481 7 6 4.1406 0.8793 1.2329 8 7 3.4015 0.3382 2.1766 9 14 6.0019 0.8822 1.3908 10 1 6.4965 2.2825 1.3911 11 1 6.3921 0.2186 2.6607 12 1 6.5969 0.1474 0.2457 13 7 1.6540 2.0983 -1.2565 14 6 1.5466 3.5528 -1.0799 15 6 1.0229 4.1755 -2.3483 16 8 0.7642 3.4765 -3.3052 17 7 0.8411 5.5090 -2.4192 18 6 0.4527 6.0990 -3.6270 19 6 1.1622 5.8333 -4.7912 20 6 2.3522 4.9095 -4.7551 21 6 0.7727 6.4127 -5.9826 22 6 -0.3158 7.2652 -6.0156 23 6 -1.0204 7.5364 -4.8573 24 6 -0.6394 6.9556 -3.6633 25 6 -1.4083 7.2515 -2.4015 26 6 -1.3587 8.7535 -2.1143 27 6 -2.8638 6.8136 -2.5766 28 1 -0.3634 0.4329 -0.9320 29 1 -0.3634 -1.0237 0.0911 30 1 -0.3634 0.5907 0.8409 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8229 -0.0590 2.9548 34 1 2.3010 1.8708 -1.9967 35 1 0.8626 3.7695 -0.2594 36 1 2.5296 3.9646 -0.8518 37 1 0.9797 6.0599 -1.6328 38 1 2.0480 3.9125 -5.0738 39 1 3.1246 5.2855 -5.4260 40 1 2.7448 4.8622 -3.7394 41 1 1.3215 6.2032 -6.8890 42 1 -0.6158 7.7202 -6.9479 43 1 -1.8697 8.2029 -4.8862 44 1 -0.9629 6.7075 -1.5686 45 1 -1.8041 9.2976 -2.9471 46 1 -1.9145 8.9674 -1.2013 47 1 -0.3218 9.0655 -1.9894 48 1 -2.8991 5.7435 -2.7812 49 1 -3.4201 7.0280 -1.6641 50 1 -3.3092 7.3577 -3.4095 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581140490.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:42 Heat of formation + Delta-G solvation = -42.855024 kcal Electronic energy + Delta-G solvation = -27345.287322 eV Core-core repulsion = 23756.916452 eV Total energy + Delta-G solvation = -3588.370870 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.81432 -39.79507 -37.78134 -36.57209 -35.65641 -34.38349 -33.03270 -32.61322 -30.48016 -28.94442 -27.97198 -27.83470 -26.59529 -24.46631 -24.10394 -22.86189 -21.51380 -21.26584 -20.35957 -18.93988 -18.59916 -17.94068 -17.16981 -16.71924 -16.42515 -16.15030 -15.60830 -15.36152 -15.12348 -14.89184 -14.78570 -14.67650 -14.37816 -14.22827 -14.08239 -13.74791 -13.57274 -13.21787 -13.12076 -13.07549 -13.02312 -12.94371 -12.78334 -12.61885 -12.51233 -12.33295 -12.07983 -11.98942 -11.72710 -11.59861 -11.54421 -11.50065 -11.10346 -10.97141 -10.67196 -10.45440 -9.47140 -9.19330 -9.06275 -8.05633 -6.27961 0.35605 0.45448 1.40058 1.42138 1.48760 1.66629 2.09049 2.40963 2.81896 3.14745 3.65973 3.72655 3.84821 3.88994 4.06695 4.23211 4.31448 4.37252 4.40711 4.42192 4.54360 4.60492 4.62715 4.68762 4.69792 4.75158 4.76109 4.82675 4.92218 4.97645 5.01011 5.05190 5.15677 5.15990 5.27338 5.30426 5.40085 5.41058 5.49211 5.50522 5.57244 5.60696 5.65831 5.68654 5.74743 6.05658 6.13943 6.16132 6.30621 6.46100 6.74312 6.95956 7.26942 7.43553 8.90970 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.015970 B = 0.003129 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.880141 B = 8947.784073 C = 9425.902298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.102 4.102 3 C 0.225 3.775 4 H 0.012 0.988 5 C -0.563 4.563 6 H 0.050 0.950 7 C 0.025 3.975 8 N -0.908 5.908 9 Si 0.949 3.051 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.276 1.276 13 N -0.670 5.670 14 C 0.054 3.946 15 C 0.520 3.480 16 O -0.539 6.539 17 N -0.670 5.670 18 C 0.123 3.877 19 C -0.097 4.097 20 C -0.102 4.102 21 C -0.124 4.124 22 C -0.122 4.122 23 C -0.112 4.112 24 C -0.091 4.091 25 C -0.058 4.058 26 C -0.137 4.137 27 C -0.139 4.139 28 H 0.049 0.951 29 H 0.043 0.957 30 H 0.035 0.965 31 H 0.023 0.977 32 H 0.066 0.934 33 H 0.263 0.737 34 H 0.332 0.668 35 H 0.101 0.899 36 H 0.061 0.939 37 H 0.418 0.582 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.044 0.956 41 H 0.137 0.863 42 H 0.150 0.850 43 H 0.147 0.853 44 H 0.069 0.931 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.053 0.947 48 H 0.033 0.967 49 H 0.069 0.931 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.931 18.656 -11.179 23.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.141 4.141 3 C 0.117 3.883 4 H 0.029 0.971 5 C -0.602 4.602 6 H 0.068 0.932 7 C -0.176 4.176 8 N -0.546 5.546 9 Si 0.775 3.225 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.202 1.202 13 N -0.300 5.300 14 C -0.079 4.079 15 C 0.308 3.692 16 O -0.414 6.414 17 N -0.319 5.319 18 C 0.030 3.970 19 C -0.099 4.099 20 C -0.158 4.158 21 C -0.142 4.142 22 C -0.140 4.140 23 C -0.130 4.130 24 C -0.093 4.093 25 C -0.077 4.077 26 C -0.195 4.195 27 C -0.196 4.196 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.148 0.852 35 H 0.119 0.881 36 H 0.079 0.921 37 H 0.257 0.743 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.155 0.845 42 H 0.168 0.832 43 H 0.165 0.835 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.072 0.928 48 H 0.052 0.948 49 H 0.088 0.912 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.756 17.903 -11.529 23.423 hybrid contribution 2.258 -0.065 0.827 2.406 sum -7.498 17.838 -10.702 22.112 Atomic orbital electron populations 1.21544 0.96608 0.99583 1.00392 1.21370 0.94234 0.98519 0.99994 1.18970 0.91831 0.91520 0.85975 0.97053 1.22108 0.93848 1.38699 1.05573 0.93185 1.25613 1.01940 0.94594 0.95450 1.69982 1.36467 1.38476 1.09720 0.85759 0.81131 0.78339 0.77260 1.19705 1.20907 1.20167 1.60530 1.55133 1.05537 1.08823 1.21654 1.00884 0.90961 0.94447 1.20969 0.76774 0.81608 0.89852 1.90671 1.49585 1.61909 1.39253 1.43377 1.69227 1.07213 1.12092 1.17560 0.95447 0.97704 0.86263 1.20035 0.97249 0.98872 0.93711 1.20740 0.95235 0.98278 1.01569 1.21122 0.98452 0.97838 0.96799 1.21424 0.95221 0.97995 0.99340 1.21087 1.00530 1.00227 0.91191 1.20037 0.93665 0.98472 0.97106 1.20102 0.95556 0.98210 0.93788 1.21823 1.02144 0.93014 1.02483 1.21806 0.94699 1.00341 1.02790 0.93239 0.93774 0.94548 0.95777 0.91593 0.92768 0.85176 0.88113 0.92100 0.74332 0.92004 0.90579 0.93724 0.84531 0.83238 0.83543 0.91285 0.91455 0.91303 0.92779 0.94751 0.91180 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.19 9.74 71.98 0.70 -4.49 16 2 C -0.10 -5.00 5.45 30.59 0.17 -4.83 16 3 C 0.23 11.08 1.98 44.17 0.09 11.16 16 4 H 0.01 0.61 7.69 -2.38 -0.02 0.59 16 5 C -0.56 -29.84 8.49 25.60 0.22 -29.63 16 6 H 0.05 2.62 7.72 -2.91 -0.02 2.60 16 7 C 0.02 1.32 5.29 84.65 0.45 1.77 16 8 N -0.91 -50.65 11.29 21.45 0.24 -50.41 16 9 Si 0.95 42.48 29.54 68.60 2.03 44.50 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 13 N -0.67 -28.82 5.33 -499.46 -2.66 -31.49 16 14 C 0.05 1.90 6.00 85.56 0.51 2.42 16 15 C 0.52 17.34 5.98 87.66 0.52 17.86 16 16 O -0.54 -21.68 13.40 -3.06 -0.04 -21.73 16 17 N -0.67 -17.55 3.99 -303.50 -1.21 -18.76 16 18 C 0.12 3.25 5.85 38.15 0.22 3.47 16 19 C -0.10 -2.61 5.48 -19.74 -0.11 -2.72 16 20 C -0.10 -2.90 8.22 71.24 0.59 -2.31 16 21 C -0.12 -2.71 9.73 22.25 0.22 -2.49 16 22 C -0.12 -2.17 10.04 22.29 0.22 -1.95 16 23 C -0.11 -2.01 8.71 22.25 0.19 -1.82 16 24 C -0.09 -1.95 4.80 -19.74 -0.09 -2.04 16 25 C -0.06 -1.02 3.04 -11.54 -0.04 -1.06 16 26 C -0.14 -1.78 9.01 71.98 0.65 -1.14 16 27 C -0.14 -2.36 9.01 71.98 0.65 -1.71 16 28 H 0.05 2.05 7.90 -2.39 -0.02 2.03 16 29 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 3.57 5.95 -2.39 -0.01 3.55 16 33 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 34 H 0.33 14.87 8.29 -89.69 -0.74 14.12 16 35 H 0.10 3.36 7.92 -2.39 -0.02 3.34 16 36 H 0.06 2.15 8.13 -2.39 -0.02 2.13 16 37 H 0.42 8.58 8.07 -92.71 -0.75 7.83 16 38 H 0.06 2.05 7.08 -2.39 -0.02 2.03 16 39 H 0.08 1.79 8.13 -2.39 -0.02 1.77 16 40 H 0.04 1.36 6.14 -2.39 -0.01 1.35 16 41 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 42 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 43 H 0.15 1.84 7.10 -2.91 -0.02 1.82 16 44 H 0.07 1.32 6.45 -2.39 -0.02 1.30 16 45 H 0.07 0.74 7.39 -2.39 -0.02 0.72 16 46 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.07 0.97 7.39 -2.38 -0.02 0.95 16 Total: -1.00 -63.80 394.45 2.95 -60.85 By element: Atomic # 1 Polarization: 37.10 SS G_CDS: -0.56 Total: 36.54 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: 5.16 Total: -19.51 kcal Atomic # 7 Polarization: -97.02 SS G_CDS: -3.63 Total: -100.66 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.04 Total: -21.73 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -63.80 2.95 -60.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581140490.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.990 kcal (2) G-P(sol) polarization free energy of solvation -63.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds