Wall clock time and date at job start Tue Mar 31 2020 12:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47024 * 2 1 4 4 H 1.09004 * 109.46678 * 54.87371 * 3 2 1 5 5 C 1.50701 * 109.46867 * 174.87240 * 3 2 1 6 6 H 1.08004 * 119.99558 * 120.00623 * 5 3 2 7 7 C 1.37877 * 120.00224 * 299.99682 * 5 3 2 8 8 N 1.31513 * 119.99755 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00060 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47179 * 59.99939 * 9 7 5 11 11 H 1.48498 * 109.47049 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47000 * 300.00465 * 9 7 5 13 13 N 1.46899 * 109.46964 * 294.87265 * 3 2 1 14 14 C 1.46897 * 110.99739 * 153.51398 * 13 3 2 15 15 C 1.50698 * 109.47133 * 176.65727 * 14 13 3 16 16 C 1.38260 * 119.99881 * 89.99888 * 15 14 13 17 17 C 1.38216 * 119.99465 * 180.02562 * 16 15 14 18 18 C 1.38255 * 120.00614 * 0.02562 * 17 16 15 19 19 C 1.38211 * 119.99811 * 359.94807 * 18 17 16 20 20 C 1.50696 * 119.99712 * 180.02562 * 19 18 17 21 21 N 1.46893 * 109.47218 * 90.00558 * 20 19 18 22 22 C 1.47012 * 111.00381 * 169.99591 * 21 20 19 23 23 C 1.53096 * 109.26429 * 177.60467 * 22 21 20 24 24 O 1.43013 * 109.29319 * 56.82311 * 23 22 21 25 25 C 1.43012 * 113.74129 * 301.40807 * 24 23 22 26 26 C 1.47021 * 111.00359 * 46.36001 * 21 20 19 27 27 C 1.38216 * 120.00053 * 270.21144 * 15 14 13 28 28 H 1.09002 * 109.47214 * 306.03446 * 1 2 3 29 29 H 1.09002 * 109.47016 * 66.03486 * 1 2 3 30 30 H 1.08998 * 109.47152 * 186.02969 * 1 2 3 31 31 H 1.09002 * 109.47288 * 240.00109 * 2 1 3 32 32 H 1.09002 * 109.46817 * 119.99513 * 2 1 3 33 33 H 0.97007 * 119.99640 * 179.97438 * 8 7 5 34 34 H 1.00896 * 110.99958 * 29.56170 * 13 3 2 35 35 H 1.08998 * 109.47236 * 56.66132 * 14 13 3 36 36 H 1.09005 * 109.47550 * 296.65953 * 14 13 3 37 37 H 1.07990 * 120.00102 * 0.02562 * 16 15 14 38 38 H 1.08010 * 119.99610 * 179.97438 * 17 16 15 39 39 H 1.08003 * 120.00137 * 179.97438 * 18 17 16 40 40 H 1.09000 * 109.47263 * 329.99789 * 20 19 18 41 41 H 1.09007 * 109.46922 * 209.99823 * 20 19 18 42 42 H 1.09008 * 109.50629 * 57.67146 * 22 21 20 43 43 H 1.08994 * 109.50749 * 297.54331 * 22 21 20 44 44 H 1.08993 * 109.51302 * 176.78770 * 23 22 21 45 45 H 1.09004 * 109.50532 * 296.87725 * 23 22 21 46 46 H 1.09008 * 109.47093 * 298.66077 * 25 24 23 47 47 H 1.08996 * 109.54798 * 178.57557 * 25 24 23 48 48 H 1.08993 * 109.50417 * 302.32902 * 26 21 20 49 49 H 1.08995 * 109.50073 * 62.41750 * 26 21 20 50 50 H 1.08003 * 120.00087 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6035 1.9821 0.8406 5 6 3.5416 1.4444 0.1270 6 1 4.1485 1.8885 -0.6482 7 6 4.1407 0.8794 1.2328 8 7 3.4016 0.3383 2.1766 9 14 6.0020 0.8823 1.3905 10 1 6.4965 2.2825 1.3908 11 1 6.3922 0.2188 2.6604 12 1 6.5970 0.1476 0.2453 13 7 1.6540 2.0983 -1.2565 14 6 1.5405 3.5521 -1.0783 15 6 1.2244 4.1974 -2.4030 16 6 -0.0913 4.3748 -2.7890 17 6 -0.3811 4.9662 -4.0042 18 6 0.6446 5.3798 -4.8339 19 6 1.9598 5.2029 -4.4477 20 6 3.0777 5.6543 -5.3518 21 7 3.4300 7.0454 -5.0379 22 6 4.6651 7.4448 -5.7280 23 6 4.9621 8.9151 -5.4215 24 8 5.0511 9.0939 -4.0054 25 6 3.8655 8.7143 -3.3015 26 6 3.5574 7.2420 -3.5864 27 6 2.2498 4.6078 -3.2339 28 1 -0.3634 0.6045 0.8310 29 1 -0.3633 0.4174 -0.9391 30 1 -0.3633 -1.0220 0.1079 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 3.8232 -0.0595 2.9544 34 1 0.7957 1.7103 -1.6181 35 1 2.4828 3.9462 -0.6979 36 1 0.7425 3.7700 -0.3684 37 1 -0.8924 4.0513 -2.1412 38 1 -1.4089 5.1044 -4.3060 39 1 0.4181 5.8415 -5.7836 40 1 2.7547 5.5868 -6.3906 41 1 3.9482 5.0160 -5.1998 42 1 4.5396 7.3153 -6.8030 43 1 5.4925 6.8263 -5.3805 44 1 5.9069 9.1998 -5.8845 45 1 4.1604 9.5385 -5.8173 46 1 3.0315 9.3319 -3.6350 47 1 4.0164 8.8540 -2.2311 48 1 2.6233 6.9645 -3.0982 49 1 4.3667 6.6197 -3.2046 50 1 3.2776 4.4658 -2.9340 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581318604.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:36 Heat of formation + Delta-G solvation = -19.004058 kcal Electronic energy + Delta-G solvation = -27005.999823 eV Core-core repulsion = 23418.663209 eV Total energy + Delta-G solvation = -3587.336614 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.10258 -38.97608 -36.51238 -35.77895 -33.09913 -31.79518 -31.58041 -31.04232 -29.90759 -28.00233 -26.68351 -24.58513 -24.48637 -24.09428 -22.58563 -21.73655 -20.75848 -19.86222 -19.51483 -16.79843 -16.45955 -16.30891 -16.13853 -15.59924 -15.41896 -15.19785 -14.93565 -14.76987 -14.34579 -14.24146 -13.92706 -13.75437 -13.16370 -12.96831 -12.63767 -12.55961 -12.38867 -12.27874 -12.00075 -11.89865 -11.55911 -11.54780 -11.31061 -11.20575 -10.91694 -10.80837 -10.69618 -10.68407 -10.59460 -9.96965 -9.85214 -9.70257 -9.64281 -9.13022 -8.76590 -8.49234 -8.38249 -8.35170 -7.24219 -5.97560 -4.01785 1.46753 1.60522 3.33184 3.37546 3.40840 3.54365 3.71143 4.06249 4.44298 4.58467 4.74164 4.82388 4.92060 4.96351 5.07006 5.09861 5.12181 5.27501 5.30923 5.34146 5.40434 5.44597 5.50872 5.58117 5.58950 5.69658 5.74988 5.78060 5.82479 5.95714 6.12898 6.14833 6.17377 6.29746 6.39300 6.47701 6.60914 6.67011 6.76556 6.78354 6.82573 6.93936 6.96016 7.06322 7.17025 7.20105 7.46965 7.76682 7.90377 8.27606 8.38291 8.73807 9.05495 9.63184 11.07772 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.011644 B = 0.003455 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.178869 B = 8101.866458 C = 9896.878201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.219 3.781 4 H 0.002 0.998 5 C -0.494 4.494 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.680 5.680 14 C 0.102 3.898 15 C -0.063 4.063 16 C -0.115 4.115 17 C -0.124 4.124 18 C -0.108 4.108 19 C -0.092 4.092 20 C 0.096 3.904 21 N -0.531 5.531 22 C 0.015 3.985 23 C 0.065 3.935 24 O -0.387 6.387 25 C 0.064 3.936 26 C 0.013 3.987 27 C -0.090 4.090 28 H 0.042 0.958 29 H 0.035 0.965 30 H 0.037 0.963 31 H 0.041 0.959 32 H 0.100 0.900 33 H 0.260 0.740 34 H 0.318 0.682 35 H 0.081 0.919 36 H 0.024 0.976 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.083 0.917 41 H 0.046 0.954 42 H 0.085 0.915 43 H 0.044 0.956 44 H 0.096 0.904 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.098 0.902 48 H 0.095 0.905 49 H 0.046 0.954 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.991 13.826 -14.547 20.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.112 3.888 4 H 0.020 0.980 5 C -0.532 4.532 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.311 5.311 14 C -0.027 4.027 15 C -0.064 4.064 16 C -0.134 4.134 17 C -0.142 4.142 18 C -0.127 4.127 19 C -0.092 4.092 20 C -0.030 4.030 21 N -0.256 5.256 22 C -0.113 4.113 23 C -0.012 4.012 24 O -0.306 6.306 25 C -0.013 4.013 26 C -0.115 4.115 27 C -0.109 4.109 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.118 0.882 33 H 0.070 0.930 34 H 0.135 0.865 35 H 0.099 0.901 36 H 0.042 0.958 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.101 0.899 41 H 0.064 0.936 42 H 0.103 0.897 43 H 0.063 0.937 44 H 0.114 0.886 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.116 0.884 48 H 0.113 0.887 49 H 0.064 0.936 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.511 14.128 -14.663 20.662 hybrid contribution 0.503 -0.783 0.797 1.225 sum -3.008 13.345 -13.865 19.478 Atomic orbital electron populations 1.21883 0.99614 0.99761 0.99501 1.21776 0.91214 1.00337 1.03109 1.19174 0.95438 0.89937 0.84244 0.98010 1.21162 0.91192 1.36506 1.04381 0.92195 1.24949 0.98076 0.95626 0.95815 1.69861 1.34808 1.39289 1.09673 0.86621 0.85822 0.78139 0.77161 1.20438 1.21419 1.20332 1.60734 1.36523 1.00819 1.33027 1.20826 1.00659 0.90507 0.90728 1.20081 0.92648 0.96630 0.97023 1.21088 0.96185 0.99518 0.96637 1.21032 0.98770 0.99706 0.94687 1.20859 0.91985 1.00251 0.99639 1.19614 0.94199 1.00002 0.95416 1.21063 0.95677 0.87593 0.98711 1.62378 1.32732 1.21934 1.08560 1.22811 0.91263 0.97317 0.99906 1.22628 1.01985 0.94533 0.82071 1.87986 1.37725 1.86173 1.18676 1.22698 0.87582 0.93837 0.97163 1.22914 1.02614 0.97258 0.88743 1.20983 0.99412 0.97355 0.93162 0.93904 0.94629 0.94348 0.94040 0.88207 0.93017 0.86504 0.90086 0.95809 0.86557 0.86512 0.86530 0.89866 0.93624 0.89678 0.93750 0.88609 0.92400 0.92420 0.88363 0.88651 0.93602 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.63 37.16 0.36 -2.52 16 2 C -0.13 -2.95 5.35 -26.73 -0.14 -3.09 16 3 C 0.22 5.38 2.03 -68.86 -0.14 5.24 16 4 H 0.00 0.06 7.82 -51.93 -0.41 -0.34 16 5 C -0.49 -13.49 8.63 -34.44 -0.30 -13.79 16 6 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 7 C 0.06 1.53 5.29 -17.82 -0.09 1.44 16 8 N -0.90 -25.34 11.29 55.43 0.63 -24.72 16 9 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.68 -14.25 6.27 -109.22 -0.68 -14.93 16 14 C 0.10 1.89 5.58 -4.98 -0.03 1.87 16 15 C -0.06 -0.99 5.42 -104.62 -0.57 -1.56 16 16 C -0.12 -1.59 9.70 -39.58 -0.38 -1.98 16 17 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 18 C -0.11 -1.30 9.70 -39.58 -0.38 -1.68 16 19 C -0.09 -1.18 4.14 -104.63 -0.43 -1.61 16 20 C 0.10 1.08 5.43 -4.98 -0.03 1.05 16 21 N -0.53 -5.82 4.87 -235.76 -1.15 -6.97 16 22 C 0.02 0.14 5.62 -3.71 -0.02 0.12 16 23 C 0.06 0.59 7.01 37.21 0.26 0.85 16 24 O -0.39 -4.57 10.83 -35.23 -0.38 -4.95 16 25 C 0.06 0.69 7.01 37.21 0.26 0.95 16 26 C 0.01 0.15 4.66 -3.71 -0.02 0.13 16 27 C -0.09 -1.34 7.53 -39.58 -0.30 -1.64 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.03 0.61 6.65 -51.93 -0.35 0.27 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 33 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.32 6.19 6.59 -39.29 -0.26 5.93 16 35 H 0.08 1.63 7.95 -51.93 -0.41 1.22 16 36 H 0.02 0.43 8.06 -51.93 -0.42 0.02 16 37 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 39 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 40 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 41 H 0.05 0.54 8.02 -51.92 -0.42 0.12 16 42 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 43 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 47 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.10 1.19 5.92 -51.93 -0.31 0.88 16 49 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.12 1.89 8.06 -52.48 -0.42 1.47 16 LS Contribution 391.73 15.07 5.90 5.90 Total: -1.00 -29.02 391.73 -11.82 -40.84 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -8.76 Total: 6.51 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -2.35 Total: -18.11 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: -1.21 Total: -46.63 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -0.38 Total: -4.95 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.02 -11.82 -40.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581318604.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.836 kcal (2) G-P(sol) polarization free energy of solvation -29.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds