Wall clock time and date at job start Tue Mar 31 2020 12:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47024 * 2 1 4 4 H 1.09004 * 109.46678 * 54.87371 * 3 2 1 5 5 C 1.50701 * 109.46867 * 174.87240 * 3 2 1 6 6 H 1.08004 * 119.99558 * 120.00623 * 5 3 2 7 7 C 1.37877 * 120.00224 * 299.99682 * 5 3 2 8 8 N 1.31513 * 119.99755 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00060 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47179 * 59.99939 * 9 7 5 11 11 H 1.48498 * 109.47049 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47000 * 300.00465 * 9 7 5 13 13 N 1.46899 * 109.46964 * 294.87265 * 3 2 1 14 14 C 1.46897 * 110.99739 * 153.51398 * 13 3 2 15 15 C 1.50698 * 109.47133 * 176.65727 * 14 13 3 16 16 C 1.38260 * 119.99881 * 89.99888 * 15 14 13 17 17 C 1.38216 * 119.99465 * 180.02562 * 16 15 14 18 18 C 1.38255 * 120.00614 * 0.02562 * 17 16 15 19 19 C 1.38211 * 119.99811 * 359.94807 * 18 17 16 20 20 C 1.50696 * 119.99712 * 180.02562 * 19 18 17 21 21 N 1.46893 * 109.47218 * 90.00558 * 20 19 18 22 22 C 1.47012 * 111.00381 * 169.99591 * 21 20 19 23 23 C 1.53096 * 109.26429 * 177.60467 * 22 21 20 24 24 O 1.43013 * 109.29319 * 56.82311 * 23 22 21 25 25 C 1.43012 * 113.74129 * 301.40807 * 24 23 22 26 26 C 1.47021 * 111.00359 * 46.36001 * 21 20 19 27 27 C 1.38216 * 120.00053 * 270.21144 * 15 14 13 28 28 H 1.09002 * 109.47214 * 306.03446 * 1 2 3 29 29 H 1.09002 * 109.47016 * 66.03486 * 1 2 3 30 30 H 1.08998 * 109.47152 * 186.02969 * 1 2 3 31 31 H 1.09002 * 109.47288 * 240.00109 * 2 1 3 32 32 H 1.09002 * 109.46817 * 119.99513 * 2 1 3 33 33 H 0.97007 * 119.99640 * 179.97438 * 8 7 5 34 34 H 1.00896 * 110.99958 * 29.56170 * 13 3 2 35 35 H 1.08998 * 109.47236 * 56.66132 * 14 13 3 36 36 H 1.09005 * 109.47550 * 296.65953 * 14 13 3 37 37 H 1.07990 * 120.00102 * 0.02562 * 16 15 14 38 38 H 1.08010 * 119.99610 * 179.97438 * 17 16 15 39 39 H 1.08003 * 120.00137 * 179.97438 * 18 17 16 40 40 H 1.09000 * 109.47263 * 329.99789 * 20 19 18 41 41 H 1.09007 * 109.46922 * 209.99823 * 20 19 18 42 42 H 1.09008 * 109.50629 * 57.67146 * 22 21 20 43 43 H 1.08994 * 109.50749 * 297.54331 * 22 21 20 44 44 H 1.08993 * 109.51302 * 176.78770 * 23 22 21 45 45 H 1.09004 * 109.50532 * 296.87725 * 23 22 21 46 46 H 1.09008 * 109.47093 * 298.66077 * 25 24 23 47 47 H 1.08996 * 109.54798 * 178.57557 * 25 24 23 48 48 H 1.08993 * 109.50417 * 302.32902 * 26 21 20 49 49 H 1.08995 * 109.50073 * 62.41750 * 26 21 20 50 50 H 1.08003 * 120.00087 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6035 1.9821 0.8406 5 6 3.5416 1.4444 0.1270 6 1 4.1485 1.8885 -0.6482 7 6 4.1407 0.8794 1.2328 8 7 3.4016 0.3383 2.1766 9 14 6.0020 0.8823 1.3905 10 1 6.4965 2.2825 1.3908 11 1 6.3922 0.2188 2.6604 12 1 6.5970 0.1476 0.2453 13 7 1.6540 2.0983 -1.2565 14 6 1.5405 3.5521 -1.0783 15 6 1.2244 4.1974 -2.4030 16 6 -0.0913 4.3748 -2.7890 17 6 -0.3811 4.9662 -4.0042 18 6 0.6446 5.3798 -4.8339 19 6 1.9598 5.2029 -4.4477 20 6 3.0777 5.6543 -5.3518 21 7 3.4300 7.0454 -5.0379 22 6 4.6651 7.4448 -5.7280 23 6 4.9621 8.9151 -5.4215 24 8 5.0511 9.0939 -4.0054 25 6 3.8655 8.7143 -3.3015 26 6 3.5574 7.2420 -3.5864 27 6 2.2498 4.6078 -3.2339 28 1 -0.3634 0.6045 0.8310 29 1 -0.3633 0.4174 -0.9391 30 1 -0.3633 -1.0220 0.1079 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 3.8232 -0.0595 2.9544 34 1 0.7957 1.7103 -1.6181 35 1 2.4828 3.9462 -0.6979 36 1 0.7425 3.7700 -0.3684 37 1 -0.8924 4.0513 -2.1412 38 1 -1.4089 5.1044 -4.3060 39 1 0.4181 5.8415 -5.7836 40 1 2.7547 5.5868 -6.3906 41 1 3.9482 5.0160 -5.1998 42 1 4.5396 7.3153 -6.8030 43 1 5.4925 6.8263 -5.3805 44 1 5.9069 9.1998 -5.8845 45 1 4.1604 9.5385 -5.8173 46 1 3.0315 9.3319 -3.6350 47 1 4.0164 8.8540 -2.2311 48 1 2.6233 6.9645 -3.0982 49 1 4.3667 6.6197 -3.2046 50 1 3.2776 4.4658 -2.9340 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581318604.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:36 Heat of formation + Delta-G solvation = -37.128880 kcal Electronic energy + Delta-G solvation = -27006.785774 eV Core-core repulsion = 23418.663209 eV Total energy + Delta-G solvation = -3588.122566 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.04655 -39.97044 -38.14808 -36.82425 -34.76696 -33.48355 -32.61149 -31.97083 -31.30922 -29.00149 -28.49311 -26.11382 -25.41423 -24.98109 -24.34141 -22.82716 -21.69498 -21.47876 -20.85920 -18.40164 -17.66614 -17.43773 -17.04809 -16.86025 -16.68194 -16.39640 -16.07725 -15.97177 -15.79957 -15.38864 -15.22638 -14.93569 -14.65060 -14.20459 -14.10854 -13.90030 -13.56481 -13.45628 -13.17464 -13.11722 -12.96757 -12.82400 -12.78688 -12.56919 -12.44826 -12.35240 -12.03985 -11.96026 -11.77771 -11.57139 -11.53318 -11.34012 -11.09104 -10.68902 -10.45449 -9.75103 -9.61442 -9.35403 -9.02506 -8.09275 -6.21255 0.42420 0.52419 1.38666 1.39603 1.47554 2.40954 2.63129 2.90770 3.07330 3.15924 3.66866 3.75058 3.89281 3.94078 4.01485 4.12790 4.14356 4.22045 4.27099 4.32078 4.39081 4.43615 4.49121 4.55141 4.57716 4.61359 4.67132 4.68282 4.71046 4.81180 4.82784 4.84641 4.89963 4.99200 5.07267 5.16437 5.19403 5.22409 5.34506 5.55429 5.59066 5.67411 5.71592 5.77248 5.86877 5.87602 5.92534 6.14486 6.16516 6.33200 6.46891 6.91212 6.96187 7.47592 8.93668 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.011644 B = 0.003455 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.178869 B = 8101.866458 C = 9896.878201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.226 3.774 4 H -0.030 1.030 5 C -0.513 4.513 6 H 0.046 0.954 7 C 0.012 3.988 8 N -0.918 5.918 9 Si 0.952 3.048 10 H -0.276 1.276 11 H -0.281 1.281 12 H -0.274 1.274 13 N -0.680 5.680 14 C 0.110 3.890 15 C -0.082 4.082 16 C -0.120 4.120 17 C -0.116 4.116 18 C -0.102 4.102 19 C -0.090 4.090 20 C 0.098 3.902 21 N -0.528 5.528 22 C 0.014 3.986 23 C 0.061 3.939 24 O -0.408 6.408 25 C 0.066 3.934 26 C 0.018 3.982 27 C -0.104 4.104 28 H 0.037 0.963 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.035 0.965 32 H 0.069 0.931 33 H 0.261 0.739 34 H 0.329 0.671 35 H 0.052 0.948 36 H 0.025 0.975 37 H 0.126 0.874 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.107 0.893 41 H 0.033 0.967 42 H 0.109 0.891 43 H 0.030 0.970 44 H 0.116 0.884 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.102 0.898 48 H 0.085 0.915 49 H 0.022 0.978 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.155 14.881 -17.047 23.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C 0.118 3.882 4 H -0.012 1.012 5 C -0.552 4.552 6 H 0.064 0.936 7 C -0.186 4.186 8 N -0.558 5.558 9 Si 0.778 3.222 10 H -0.202 1.202 11 H -0.206 1.206 12 H -0.199 1.199 13 N -0.312 5.312 14 C -0.019 4.019 15 C -0.082 4.082 16 C -0.139 4.139 17 C -0.134 4.134 18 C -0.120 4.120 19 C -0.090 4.090 20 C -0.029 4.029 21 N -0.253 5.253 22 C -0.114 4.114 23 C -0.015 4.015 24 O -0.327 6.327 25 C -0.011 4.011 26 C -0.111 4.111 27 C -0.123 4.123 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.147 0.853 35 H 0.070 0.930 36 H 0.043 0.957 37 H 0.144 0.856 38 H 0.167 0.833 39 H 0.163 0.837 40 H 0.125 0.875 41 H 0.051 0.949 42 H 0.128 0.872 43 H 0.049 0.951 44 H 0.134 0.866 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.120 0.880 48 H 0.103 0.897 49 H 0.040 0.960 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.682 15.190 -17.179 23.404 hybrid contribution 0.856 -1.059 1.512 2.035 sum -3.826 14.131 -15.666 21.442 Atomic orbital electron populations 1.21745 0.96122 1.01222 1.00516 1.21599 0.94356 0.98839 1.01190 1.18940 0.93947 0.90694 0.84625 1.01223 1.21421 0.92845 1.36642 1.04317 0.93613 1.25638 1.02156 0.95292 0.95520 1.69984 1.36275 1.39623 1.09932 0.85703 0.80966 0.78152 0.77333 1.20187 1.20615 1.19946 1.60603 1.37319 1.02203 1.31082 1.20674 0.99211 0.89127 0.92909 1.19818 0.94086 0.98417 0.95909 1.21218 0.95200 0.99724 0.97734 1.21377 1.00472 0.98030 0.93488 1.21216 0.91183 0.99085 1.00532 1.19750 0.95505 0.99250 0.94542 1.21103 0.94759 0.87530 0.99489 1.62449 1.33526 1.21528 1.07824 1.22913 0.90063 0.97339 1.01039 1.22838 1.03521 0.94331 0.80820 1.87959 1.38234 1.86247 1.20269 1.22713 0.87758 0.93050 0.97569 1.22813 1.01151 0.97674 0.89447 1.20862 0.98155 0.98812 0.94464 0.94367 0.92397 0.92327 0.94644 0.91294 0.92982 0.85298 0.92975 0.95678 0.85581 0.83292 0.83672 0.87524 0.94922 0.87242 0.95121 0.86635 0.91378 0.91394 0.88005 0.89676 0.95952 0.88551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.20 9.63 71.98 0.69 -4.51 16 2 C -0.12 -5.79 5.35 30.60 0.16 -5.62 16 3 C 0.23 11.53 2.03 44.17 0.09 11.62 16 4 H -0.03 -1.68 7.82 -2.39 -0.02 -1.70 16 5 C -0.51 -29.23 8.63 25.60 0.22 -29.01 16 6 H 0.05 2.67 7.81 -2.91 -0.02 2.64 16 7 C 0.01 0.69 5.29 84.65 0.45 1.14 16 8 N -0.92 -53.34 11.29 21.45 0.24 -53.09 16 9 Si 0.95 45.01 29.54 68.60 2.03 47.04 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 13 N -0.68 -29.39 6.27 -499.46 -3.13 -32.52 16 14 C 0.11 4.28 5.58 85.56 0.48 4.76 16 15 C -0.08 -2.61 5.42 -19.86 -0.11 -2.71 16 16 C -0.12 -3.12 9.70 22.27 0.22 -2.90 16 17 C -0.12 -2.42 10.05 22.27 0.22 -2.19 16 18 C -0.10 -2.10 9.70 22.27 0.22 -1.88 16 19 C -0.09 -2.20 4.14 -19.87 -0.08 -2.28 16 20 C 0.10 2.06 5.43 85.56 0.46 2.52 16 21 N -0.53 -10.89 4.87 -899.80 -4.38 -15.27 16 22 C 0.01 0.25 5.62 86.31 0.49 0.73 16 23 C 0.06 1.00 7.01 72.01 0.50 1.51 16 24 O -0.41 -9.31 10.83 -148.98 -1.61 -10.92 16 25 C 0.07 1.39 7.01 72.01 0.50 1.89 16 26 C 0.02 0.42 4.66 86.31 0.40 0.82 16 27 C -0.10 -3.18 7.53 22.27 0.17 -3.01 16 28 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 1.90 6.65 -2.39 -0.02 1.88 16 30 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.07 3.73 5.95 -2.39 -0.01 3.72 16 33 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 34 H 0.33 12.77 6.59 -89.70 -0.59 12.18 16 35 H 0.05 2.28 7.95 -2.39 -0.02 2.26 16 36 H 0.03 0.96 8.06 -2.38 -0.02 0.94 16 37 H 0.13 2.98 8.06 -2.92 -0.02 2.96 16 38 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 39 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 40 H 0.11 1.76 8.09 -2.39 -0.02 1.74 16 41 H 0.03 0.77 8.02 -2.38 -0.02 0.75 16 42 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 43 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 47 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.08 2.17 5.92 -2.39 -0.01 2.16 16 49 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 50 H 0.10 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -64.73 391.73 -1.46 -66.19 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: 0.31 Total: 27.72 kcal Atomic # 6 Polarization: -34.23 SS G_CDS: 5.09 Total: -29.14 kcal Atomic # 7 Polarization: -93.61 SS G_CDS: -7.27 Total: -100.88 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -1.61 Total: -10.92 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -64.73 -1.46 -66.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581318604.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.058 kcal (2) G-P(sol) polarization free energy of solvation -64.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds