Wall clock time and date at job start Tue Mar 31 2020 13:14:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.53002 * 109.47211 * 2 1
4 4 O 1.42902 * 109.47031 * 120.00207 * 2 1 3
5 5 C 1.42904 * 114.00011 * 144.16910 * 4 2 1
6 6 H 1.08996 * 109.47208 * 37.46354 * 5 4 2
7 7 C 1.53001 * 109.46861 * 157.46232 * 5 4 2
8 8 N 1.46894 * 109.47337 * 300.16329 * 7 5 4
9 9 C 1.46892 * 110.99851 * 182.47755 * 8 7 5
10 10 C 1.53243 * 109.34115 * 187.25868 * 9 8 7
11 11 N 1.47085 * 108.51846 * 306.16839 * 10 9 8
12 12 C 1.36931 * 120.88417 * 231.18417 * 11 10 9
13 13 H 1.08005 * 119.99810 * 28.00114 * 12 11 10
14 14 C 1.38803 * 120.00238 * 207.72028 * 12 11 10
15 15 N 1.31625 * 119.99750 * 18.44455 * 14 12 11
16 16 Si 1.86802 * 120.00400 * 198.43886 * 14 12 11
17 17 H 1.48503 * 109.46862 * 0.02562 * 16 14 12
18 18 H 1.48497 * 109.47086 * 119.99982 * 16 14 12
19 19 H 1.48498 * 109.47304 * 240.00222 * 16 14 12
20 20 C 1.47082 * 118.23364 * 51.45838 * 11 10 9
21 21 C 1.46896 * 111.00219 * 306.78376 * 8 7 5
22 22 C 1.50702 * 109.47018 * 277.46648 * 5 4 2
23 23 C 1.38233 * 119.99621 * 324.72330 * 22 5 4
24 24 C 1.38241 * 119.99624 * 179.79063 * 23 22 5
25 25 C 1.38234 * 119.99876 * 0.44555 * 24 23 22
26 26 C 1.38236 * 120.00061 * 359.80950 * 25 24 23
27 27 C 1.38232 * 120.00197 * 359.97438 * 26 25 24
28 28 H 1.08995 * 109.47189 * 300.00316 * 1 2 3
29 29 H 1.09010 * 109.46958 * 59.99868 * 1 2 3
30 30 H 1.09001 * 109.47298 * 179.97438 * 1 2 3
31 31 H 1.09008 * 109.47335 * 240.00016 * 2 1 3
32 32 H 1.08996 * 109.46729 * 64.25751 * 3 2 1
33 33 H 1.09003 * 109.47135 * 184.25154 * 3 2 1
34 34 H 1.08991 * 109.47204 * 304.25298 * 3 2 1
35 35 H 1.08998 * 109.46816 * 180.16404 * 7 5 4
36 36 H 1.09004 * 109.46868 * 60.17020 * 7 5 4
37 37 H 1.08999 * 109.49727 * 67.29718 * 9 8 7
38 38 H 1.08999 * 109.49923 * 307.21680 * 9 8 7
39 39 H 1.09001 * 109.62934 * 186.46171 * 10 9 8
40 40 H 1.09000 * 109.63202 * 65.88050 * 10 9 8
41 41 H 0.97001 * 119.99879 * 180.02562 * 15 14 12
42 42 H 1.09005 * 109.62957 * 68.25067 * 20 11 10
43 43 H 1.08999 * 109.62577 * 188.82886 * 20 11 10
44 44 H 1.09003 * 109.48927 * 292.70191 * 21 8 7
45 45 H 1.09004 * 109.49326 * 52.75700 * 21 8 7
46 46 H 1.08000 * 120.00663 * 359.97438 * 23 22 5
47 47 H 1.08000 * 119.99990 * 180.27743 * 24 23 22
48 48 H 1.08003 * 119.99894 * 179.83305 * 25 24 23
49 49 H 1.08002 * 119.99781 * 180.02562 * 26 25 24
50 50 H 1.07994 * 120.00459 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 8 2.0063 -0.6737 1.1668
5 6 3.1979 -1.4331 0.9537
6 1 3.8511 -0.8984 0.2641
7 6 3.9198 -1.6343 2.2876
8 7 4.2647 -0.3261 2.8599
9 6 5.0122 -0.4812 4.1149
10 6 5.1942 0.8920 4.7702
11 7 5.8075 1.8003 3.7892
12 6 6.9221 2.5294 4.1071
13 1 7.6175 2.1584 4.8455
14 6 7.1612 3.7425 3.4763
15 7 6.1804 4.3691 2.8616
16 14 8.8747 4.4858 3.4999
17 1 9.7921 3.5912 4.2505
18 1 9.3659 4.6417 2.1071
19 1 8.8287 5.8151 4.1602
20 6 5.1881 1.9091 2.4595
21 6 5.0098 0.4914 1.8933
22 6 2.8404 -2.7751 0.3685
23 6 1.6761 -3.4106 0.7574
24 6 1.3460 -4.6396 0.2173
25 6 2.1848 -5.2371 -0.7047
26 6 3.3517 -4.6039 -1.0897
27 6 3.6796 -3.3730 -0.5531
28 1 -0.3633 0.5139 0.8899
29 1 -0.3633 0.5139 -0.8901
30 1 -0.3634 -1.0277 -0.0005
31 1 1.8933 -0.5139 -0.8900
32 1 1.7403 1.9338 0.9257
33 1 3.1273 1.4434 -0.0762
34 1 1.6158 1.9778 -0.8494
35 1 4.8302 -2.2111 2.1247
36 1 3.2676 -2.1717 2.9762
37 1 5.9893 -0.9163 3.9049
38 1 4.4596 -1.1355 4.7891
39 1 5.8446 0.7994 5.6400
40 1 4.2238 1.2837 5.0752
41 1 6.3475 5.2167 2.4204
42 1 4.2171 2.3967 2.5467
43 1 5.8345 2.4892 1.8010
44 1 5.9869 0.0427 1.7143
45 1 4.4555 0.5421 0.9561
46 1 1.0229 -2.9458 1.4810
47 1 0.4341 -5.1342 0.5179
48 1 1.9283 -6.1986 -1.1247
49 1 4.0069 -5.0706 -1.8105
50 1 4.5915 -2.8784 -0.8535
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000589985014.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:14:04
Heat of formation + Delta-G solvation = 10.878449 kcal
Electronic energy + Delta-G solvation = -28091.927776 eV
Core-core repulsion = 24505.886965 eV
Total energy + Delta-G solvation = -3586.040812 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 318.205 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-39.94806 -38.27427 -37.41599 -34.64107 -33.07740 -31.41291 -31.07307 -30.92208
-29.88238 -28.15411 -27.06970 -25.72673 -23.56304 -22.72809 -22.55036 -22.01931
-21.09896 -20.44027 -19.02837 -17.26645 -16.72922 -16.61491 -15.77517 -15.15075
-14.86776 -14.72795 -14.47427 -14.23025 -14.03874 -13.89257 -13.49103 -13.38656
-13.17253 -13.10246 -12.87082 -12.66820 -12.55166 -12.26895 -12.06806 -11.63517
-11.59872 -11.46032 -11.27690 -11.11016 -10.94260 -10.88360 -10.68755 -10.47899
-10.34901 -10.23651 -9.99731 -9.67000 -9.53539 -9.40250 -9.02534 -8.82544
-8.46277 -7.68269 -6.60328 -5.74852 -3.15492 1.20471 1.29977 3.38500
3.46578 3.48893 3.63357 3.78776 4.33664 4.53410 4.79086 4.80492
4.89000 4.98901 5.04420 5.14124 5.27119 5.30209 5.35868 5.41503
5.42154 5.49659 5.50515 5.62178 5.72929 5.83433 5.89632 5.93059
5.94391 5.98667 5.99761 6.01332 6.08126 6.20842 6.25223 6.31751
6.34200 6.38973 6.39465 6.51205 6.53124 6.64518 6.75818 6.88580
7.01399 7.29245 7.46996 7.68640 7.71590 7.77510 7.87723 8.47752
9.25218 9.89020 10.48962 11.33799
Molecular weight = 318.20amu
Principal moments of inertia in cm(-1)
A = 0.017726 B = 0.003403 C = 0.003187
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1579.194274 B = 8226.377577 C = 8784.916547
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.082 3.918
3 C -0.172 4.172
4 O -0.347 6.347
5 C 0.133 3.867
6 H 0.070 0.930
7 C 0.067 3.933
8 N -0.519 5.519
9 C 0.045 3.955
10 C 0.150 3.850
11 N -0.595 5.595
12 C -0.251 4.251
13 H 0.065 0.935
14 C 0.002 3.998
15 N -0.900 5.900
16 Si 0.899 3.101
17 H -0.278 1.278
18 H -0.290 1.290
19 H -0.290 1.290
20 C 0.184 3.816
21 C 0.030 3.970
22 C -0.110 4.110
23 C -0.092 4.092
24 C -0.125 4.125
25 C -0.123 4.123
26 C -0.124 4.124
27 C -0.113 4.113
28 H 0.064 0.936
29 H 0.063 0.937
30 H 0.055 0.945
31 H 0.052 0.948
32 H 0.070 0.930
33 H 0.060 0.940
34 H 0.057 0.943
35 H 0.037 0.963
36 H 0.076 0.924
37 H 0.025 0.975
38 H 0.061 0.939
39 H 0.054 0.946
40 H 0.026 0.974
41 H 0.252 0.748
42 H 0.028 0.972
43 H 0.081 0.919
44 H 0.020 0.980
45 H 0.062 0.938
46 H 0.129 0.871
47 H 0.120 0.880
48 H 0.118 0.882
49 H 0.120 0.880
50 H 0.120 0.880
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.112 -16.479 -8.689 21.197
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C 0.024 3.976
3 C -0.229 4.229
4 O -0.266 6.266
5 C 0.074 3.926
6 H 0.087 0.913
7 C -0.061 4.061
8 N -0.244 5.244
9 C -0.084 4.084
10 C 0.023 3.977
11 N -0.319 5.319
12 C -0.381 4.381
13 H 0.082 0.918
14 C -0.197 4.197
15 N -0.545 5.545
16 Si 0.729 3.271
17 H -0.203 1.203
18 H -0.216 1.216
19 H -0.217 1.217
20 C 0.057 3.943
21 C -0.099 4.099
22 C -0.111 4.111
23 C -0.110 4.110
24 C -0.143 4.143
25 C -0.141 4.141
26 C -0.142 4.142
27 C -0.131 4.131
28 H 0.083 0.917
29 H 0.082 0.918
30 H 0.075 0.925
31 H 0.070 0.930
32 H 0.089 0.911
33 H 0.079 0.921
34 H 0.076 0.924
35 H 0.055 0.945
36 H 0.095 0.905
37 H 0.043 0.957
38 H 0.079 0.921
39 H 0.073 0.927
40 H 0.044 0.956
41 H 0.062 0.938
42 H 0.046 0.954
43 H 0.099 0.901
44 H 0.038 0.962
45 H 0.080 0.920
46 H 0.147 0.853
47 H 0.138 0.862
48 H 0.136 0.864
49 H 0.138 0.862
50 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges -10.615 -16.038 -8.458 21.010
hybrid contribution 1.768 -0.076 -0.579 1.862
sum -8.847 -16.113 -9.037 20.484
Atomic orbital electron populations
1.21869 0.94286 1.02044 1.02335 1.22051 0.94488 0.92908 0.88147
1.22296 1.01888 0.96098 1.02635 1.88073 1.41104 1.64359 1.33035
1.21067 0.87293 0.87379 0.96817 0.91252 1.22104 0.97541 0.92235
0.94267 1.61928 1.45081 1.12551 1.04800 1.22614 0.94847 0.99702
0.91277 1.20966 0.96359 0.88434 0.91928 1.44144 1.30755 1.48354
1.08618 1.19209 0.97529 0.98785 1.22557 0.91752 1.25022 0.97404
0.95607 1.01634 1.70068 1.29382 1.15658 1.39373 0.86276 0.84657
0.78840 0.77338 1.20327 1.21637 1.21741 1.20862 0.97030 0.89585
0.86777 1.23097 0.94136 0.97969 0.94694 1.20591 0.95658 0.97572
0.97244 1.21056 0.96493 0.94340 0.99136 1.21176 0.99701 0.95795
0.97634 1.21144 0.94997 0.99831 0.98139 1.21093 0.97287 0.95455
1.00329 1.21063 0.99353 0.95796 0.96861 0.91668 0.91801 0.92545
0.93019 0.91101 0.92099 0.92380 0.94479 0.90523 0.95658 0.92080
0.92741 0.95606 0.93763 0.95380 0.90053 0.96157 0.91977 0.85343
0.86212 0.86378 0.86220 0.86202
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.61 9.56 37.16 0.36 -1.25 16
2 C 0.08 1.05 3.12 -26.73 -0.08 0.96 16
3 C -0.17 -2.36 9.53 37.16 0.35 -2.01 16
4 O -0.35 -5.10 8.68 -35.23 -0.31 -5.41 16
5 C 0.13 1.84 1.64 -27.88 -0.05 1.79 16
6 H 0.07 0.99 5.86 -51.93 -0.30 0.69 16
7 C 0.07 1.01 4.77 -3.83 -0.02 1.00 16
8 N -0.52 -9.53 4.59 -234.03 -1.07 -10.60 16
9 C 0.04 0.84 5.62 -3.70 -0.02 0.82 16
10 C 0.15 3.29 6.69 -3.60 -0.02 3.27 16
11 N -0.60 -15.38 3.02 -171.73 -0.52 -15.90 16
12 C -0.25 -7.02 9.61 -15.07 -0.14 -7.16 16
13 H 0.06 1.77 7.89 -52.48 -0.41 1.36 16
14 C 0.00 0.05 4.89 -17.43 -0.09 -0.03 16
15 N -0.90 -26.37 11.31 55.49 0.63 -25.74 16
16 Si 0.90 21.85 29.59 -169.99 -5.03 16.82 16
17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
18 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16
19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16
20 C 0.18 4.48 5.45 -3.36 -0.02 4.47 16
21 C 0.03 0.59 5.27 -3.46 -0.02 0.58 16
22 C -0.11 -1.34 4.63 -104.62 -0.48 -1.82 16
23 C -0.09 -1.06 9.35 -39.58 -0.37 -1.43 16
24 C -0.13 -1.23 10.05 -39.58 -0.40 -1.63 16
25 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16
26 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16
27 C -0.11 -1.26 9.68 -39.58 -0.38 -1.64 16
28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16
29 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16
30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
31 H 0.05 0.63 7.56 -51.92 -0.39 0.24 16
32 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16
33 H 0.06 0.91 6.31 -51.93 -0.33 0.58 16
34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
35 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16
36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16
37 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16
38 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16
39 H 0.05 1.15 7.95 -51.93 -0.41 0.73 16
40 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16
41 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16
42 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16
43 H 0.08 2.19 6.24 -51.93 -0.32 1.87 16
44 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16
45 H 0.06 1.12 3.92 -51.93 -0.20 0.92 16
46 H 0.13 1.49 7.64 -52.49 -0.40 1.09 16
47 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16
48 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16
49 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16
50 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16
LS Contribution 390.04 15.07 5.88 5.88
Total: -1.00 -30.47 390.04 -11.28 -41.75
By element:
Atomic # 1 Polarization: 9.13 SS G_CDS: -8.68 Total: 0.45 kcal
Atomic # 6 Polarization: -5.07 SS G_CDS: -2.18 Total: -7.25 kcal
Atomic # 7 Polarization: -51.27 SS G_CDS: -0.97 Total: -52.23 kcal
Atomic # 8 Polarization: -5.10 SS G_CDS: -0.31 Total: -5.41 kcal
Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal
Total LS contribution 5.88 Total: 5.88 kcal
Total: -30.47 -11.28 -41.75 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000589985014.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 52.629 kcal
(2) G-P(sol) polarization free energy of solvation -30.470 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.159 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.281 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.751 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.878 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds