Wall clock time and date at job start Tue Mar 31 2020 13:14:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.53002 * 109.47211 * 2 1
4 4 O 1.42902 * 109.47031 * 120.00207 * 2 1 3
5 5 C 1.42904 * 114.00011 * 144.16910 * 4 2 1
6 6 H 1.08996 * 109.47208 * 37.46354 * 5 4 2
7 7 C 1.53001 * 109.46861 * 157.46232 * 5 4 2
8 8 N 1.46894 * 109.47337 * 300.16329 * 7 5 4
9 9 C 1.46892 * 110.99851 * 182.47755 * 8 7 5
10 10 C 1.53243 * 109.34115 * 187.25868 * 9 8 7
11 11 N 1.47085 * 108.51846 * 306.16839 * 10 9 8
12 12 C 1.36931 * 120.88417 * 231.18417 * 11 10 9
13 13 H 1.08005 * 119.99810 * 28.00114 * 12 11 10
14 14 C 1.38803 * 120.00238 * 207.72028 * 12 11 10
15 15 N 1.31625 * 119.99750 * 18.44455 * 14 12 11
16 16 Si 1.86802 * 120.00400 * 198.43886 * 14 12 11
17 17 H 1.48503 * 109.46862 * 0.02562 * 16 14 12
18 18 H 1.48497 * 109.47086 * 119.99982 * 16 14 12
19 19 H 1.48498 * 109.47304 * 240.00222 * 16 14 12
20 20 C 1.47082 * 118.23364 * 51.45838 * 11 10 9
21 21 C 1.46896 * 111.00219 * 306.78376 * 8 7 5
22 22 C 1.50702 * 109.47018 * 277.46648 * 5 4 2
23 23 C 1.38233 * 119.99621 * 324.72330 * 22 5 4
24 24 C 1.38241 * 119.99624 * 179.79063 * 23 22 5
25 25 C 1.38234 * 119.99876 * 0.44555 * 24 23 22
26 26 C 1.38236 * 120.00061 * 359.80950 * 25 24 23
27 27 C 1.38232 * 120.00197 * 359.97438 * 26 25 24
28 28 H 1.08995 * 109.47189 * 300.00316 * 1 2 3
29 29 H 1.09010 * 109.46958 * 59.99868 * 1 2 3
30 30 H 1.09001 * 109.47298 * 179.97438 * 1 2 3
31 31 H 1.09008 * 109.47335 * 240.00016 * 2 1 3
32 32 H 1.08996 * 109.46729 * 64.25751 * 3 2 1
33 33 H 1.09003 * 109.47135 * 184.25154 * 3 2 1
34 34 H 1.08991 * 109.47204 * 304.25298 * 3 2 1
35 35 H 1.08998 * 109.46816 * 180.16404 * 7 5 4
36 36 H 1.09004 * 109.46868 * 60.17020 * 7 5 4
37 37 H 1.08999 * 109.49727 * 67.29718 * 9 8 7
38 38 H 1.08999 * 109.49923 * 307.21680 * 9 8 7
39 39 H 1.09001 * 109.62934 * 186.46171 * 10 9 8
40 40 H 1.09000 * 109.63202 * 65.88050 * 10 9 8
41 41 H 0.97001 * 119.99879 * 180.02562 * 15 14 12
42 42 H 1.09005 * 109.62957 * 68.25067 * 20 11 10
43 43 H 1.08999 * 109.62577 * 188.82886 * 20 11 10
44 44 H 1.09003 * 109.48927 * 292.70191 * 21 8 7
45 45 H 1.09004 * 109.49326 * 52.75700 * 21 8 7
46 46 H 1.08000 * 120.00663 * 359.97438 * 23 22 5
47 47 H 1.08000 * 119.99990 * 180.27743 * 24 23 22
48 48 H 1.08003 * 119.99894 * 179.83305 * 25 24 23
49 49 H 1.08002 * 119.99781 * 180.02562 * 26 25 24
50 50 H 1.07994 * 120.00459 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 8 2.0063 -0.6737 1.1668
5 6 3.1979 -1.4331 0.9537
6 1 3.8511 -0.8984 0.2641
7 6 3.9198 -1.6343 2.2876
8 7 4.2647 -0.3261 2.8599
9 6 5.0122 -0.4812 4.1149
10 6 5.1942 0.8920 4.7702
11 7 5.8075 1.8003 3.7892
12 6 6.9221 2.5294 4.1071
13 1 7.6175 2.1584 4.8455
14 6 7.1612 3.7425 3.4763
15 7 6.1804 4.3691 2.8616
16 14 8.8747 4.4858 3.4999
17 1 9.7921 3.5912 4.2505
18 1 9.3659 4.6417 2.1071
19 1 8.8287 5.8151 4.1602
20 6 5.1881 1.9091 2.4595
21 6 5.0098 0.4914 1.8933
22 6 2.8404 -2.7751 0.3685
23 6 1.6761 -3.4106 0.7574
24 6 1.3460 -4.6396 0.2173
25 6 2.1848 -5.2371 -0.7047
26 6 3.3517 -4.6039 -1.0897
27 6 3.6796 -3.3730 -0.5531
28 1 -0.3633 0.5139 0.8899
29 1 -0.3633 0.5139 -0.8901
30 1 -0.3634 -1.0277 -0.0005
31 1 1.8933 -0.5139 -0.8900
32 1 1.7403 1.9338 0.9257
33 1 3.1273 1.4434 -0.0762
34 1 1.6158 1.9778 -0.8494
35 1 4.8302 -2.2111 2.1247
36 1 3.2676 -2.1717 2.9762
37 1 5.9893 -0.9163 3.9049
38 1 4.4596 -1.1355 4.7891
39 1 5.8446 0.7994 5.6400
40 1 4.2238 1.2837 5.0752
41 1 6.3475 5.2167 2.4204
42 1 4.2171 2.3967 2.5467
43 1 5.8345 2.4892 1.8010
44 1 5.9869 0.0427 1.7143
45 1 4.4555 0.5421 0.9561
46 1 1.0229 -2.9458 1.4810
47 1 0.4341 -5.1342 0.5179
48 1 1.9283 -6.1986 -1.1247
49 1 4.0069 -5.0706 -1.8105
50 1 4.5915 -2.8784 -0.8535
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000589985014.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:14:03
Heat of formation + Delta-G solvation = -5.847555 kcal
Electronic energy + Delta-G solvation = -28092.653070 eV
Core-core repulsion = 24505.886965 eV
Total energy + Delta-G solvation = -3586.766106 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 318.205 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-40.95192 -39.53960 -38.66428 -36.31320 -34.36871 -33.06634 -32.18076 -31.72453
-31.64151 -29.59620 -28.11226 -27.31903 -25.17692 -24.30783 -23.50344 -23.29920
-22.18300 -21.49538 -20.79600 -18.75177 -18.06192 -17.73510 -17.05072 -16.56832
-16.29188 -15.82514 -15.70341 -15.60800 -15.35180 -15.23335 -15.06673 -14.77977
-14.70830 -14.22786 -14.13280 -13.73545 -13.62854 -13.39068 -13.17185 -13.07078
-13.04883 -12.78400 -12.67563 -12.53886 -12.44716 -12.21294 -12.05866 -11.93223
-11.91162 -11.84312 -11.51873 -11.47253 -11.24756 -10.59940 -10.46074 -9.79681
-9.66119 -9.20566 -8.67258 -7.88212 -5.33263 0.41106 0.52800 1.44954
1.46427 1.57579 2.50066 2.70591 2.84638 3.01660 3.26513 3.66620
3.80438 3.92870 3.97302 4.13320 4.15250 4.20041 4.24591 4.29603
4.33020 4.34177 4.36902 4.45605 4.61366 4.61673 4.65617 4.67855
4.70841 4.76576 4.82317 4.91312 4.94509 4.96786 5.01805 5.04839
5.09063 5.18810 5.19838 5.33335 5.34317 5.42025 5.58635 5.61776
5.64520 5.65754 5.68808 6.12536 6.20272 6.24559 6.37239 6.47221
7.12544 7.82916 8.39002 9.18640
Molecular weight = 318.20amu
Principal moments of inertia in cm(-1)
A = 0.017726 B = 0.003403 C = 0.003187
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1579.194274 B = 8226.377577 C = 8784.916547
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C 0.082 3.918
3 C -0.168 4.168
4 O -0.365 6.365
5 C 0.139 3.861
6 H 0.060 0.940
7 C 0.071 3.929
8 N -0.530 5.530
9 C 0.055 3.945
10 C 0.146 3.854
11 N -0.614 5.614
12 C -0.266 4.266
13 H 0.066 0.934
14 C -0.050 4.050
15 N -0.933 5.933
16 Si 0.967 3.033
17 H -0.267 1.267
18 H -0.289 1.289
19 H -0.291 1.291
20 C 0.195 3.805
21 C 0.050 3.950
22 C -0.122 4.122
23 C -0.103 4.103
24 C -0.127 4.127
25 C -0.122 4.122
26 C -0.126 4.126
27 C -0.125 4.125
28 H 0.054 0.946
29 H 0.082 0.918
30 H 0.063 0.937
31 H 0.060 0.940
32 H 0.045 0.955
33 H 0.042 0.958
34 H 0.079 0.921
35 H 0.045 0.955
36 H 0.084 0.916
37 H 0.024 0.976
38 H 0.091 0.909
39 H 0.061 0.939
40 H 0.013 0.987
41 H 0.250 0.750
42 H -0.004 1.004
43 H 0.050 0.950
44 H 0.015 0.985
45 H 0.078 0.922
46 H 0.122 0.878
47 H 0.141 0.859
48 H 0.145 0.855
49 H 0.141 0.859
50 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.341 -19.082 -9.583 23.726
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C 0.025 3.975
3 C -0.226 4.226
4 O -0.284 6.284
5 C 0.080 3.920
6 H 0.077 0.923
7 C -0.056 4.056
8 N -0.255 5.255
9 C -0.074 4.074
10 C 0.020 3.980
11 N -0.338 5.338
12 C -0.396 4.396
13 H 0.084 0.916
14 C -0.245 4.245
15 N -0.579 5.579
16 Si 0.795 3.205
17 H -0.191 1.191
18 H -0.215 1.215
19 H -0.218 1.218
20 C 0.069 3.931
21 C -0.079 4.079
22 C -0.123 4.123
23 C -0.121 4.121
24 C -0.145 4.145
25 C -0.139 4.139
26 C -0.144 4.144
27 C -0.143 4.143
28 H 0.073 0.927
29 H 0.101 0.899
30 H 0.082 0.918
31 H 0.078 0.922
32 H 0.065 0.935
33 H 0.061 0.939
34 H 0.097 0.903
35 H 0.063 0.937
36 H 0.103 0.897
37 H 0.042 0.958
38 H 0.110 0.890
39 H 0.079 0.921
40 H 0.031 0.969
41 H 0.059 0.941
42 H 0.015 0.985
43 H 0.069 0.931
44 H 0.033 0.967
45 H 0.096 0.904
46 H 0.140 0.860
47 H 0.159 0.841
48 H 0.163 0.837
49 H 0.159 0.841
50 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges -10.853 -18.675 -9.339 23.532
hybrid contribution 1.769 0.695 -0.281 1.922
sum -9.083 -17.980 -9.621 22.323
Atomic orbital electron populations
1.21840 0.92651 1.02673 1.02783 1.22137 0.95711 0.91781 0.87918
1.22271 1.00765 0.97289 1.02242 1.88044 1.41374 1.64747 1.34250
1.20935 0.86849 0.88435 0.95753 0.92254 1.22137 0.98086 0.90270
0.95140 1.61854 1.44478 1.14543 1.04585 1.22465 0.95462 0.97710
0.91746 1.21103 0.95448 0.89529 0.91909 1.44437 1.30787 1.48780
1.09807 1.19539 0.98372 0.99117 1.22550 0.91587 1.25813 1.00944
0.96139 1.01625 1.70223 1.31329 1.15952 1.40367 0.85215 0.80261
0.77793 0.77209 1.19119 1.21524 1.21834 1.20570 0.94376 0.91857
0.86268 1.22731 0.94442 0.95315 0.95377 1.20405 0.96620 0.96868
0.98373 1.21083 0.96289 0.95175 0.99529 1.21447 1.00545 0.95150
0.97313 1.21507 0.94372 1.00672 0.97380 1.21393 0.97815 0.94868
1.00319 1.21205 0.99482 0.96589 0.97004 0.92663 0.89900 0.91784
0.92175 0.93536 0.93932 0.90264 0.93691 0.89732 0.95751 0.89033
0.92079 0.96929 0.94081 0.98547 0.93129 0.96655 0.90407 0.85992
0.84137 0.83729 0.84102 0.85924
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.93 9.56 71.98 0.69 -2.24 16
2 C 0.08 2.06 3.12 30.59 0.10 2.15 16
3 C -0.17 -4.73 9.53 71.98 0.69 -4.04 16
4 O -0.37 -10.64 8.68 -148.98 -1.29 -11.93 16
5 C 0.14 3.74 1.64 29.85 0.05 3.79 16
6 H 0.06 1.69 5.86 -2.39 -0.01 1.67 16
7 C 0.07 2.08 4.77 86.30 0.41 2.50 16
8 N -0.53 -19.32 4.59 -894.34 -4.10 -23.42 16
9 C 0.06 2.01 5.62 86.39 0.49 2.49 16
10 C 0.15 6.47 6.69 86.35 0.58 7.05 16
11 N -0.61 -32.59 3.02 -697.22 -2.11 -34.70 16
12 C -0.27 -15.13 9.61 84.03 0.81 -14.32 16
13 H 0.07 3.66 7.89 -2.91 -0.02 3.64 16
14 C -0.05 -2.84 4.89 84.86 0.41 -2.43 16
15 N -0.93 -56.55 11.31 21.65 0.24 -56.30 16
16 Si 0.97 45.64 29.59 68.60 2.03 47.67 16
17 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16
18 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16
19 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16
20 C 0.20 9.99 5.45 86.50 0.47 10.46 16
21 C 0.05 2.04 5.27 86.54 0.46 2.50 16
22 C -0.12 -2.80 4.63 -19.87 -0.09 -2.89 16
23 C -0.10 -2.17 9.35 22.27 0.21 -1.96 16
24 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16
25 C -0.12 -1.85 10.05 22.27 0.22 -1.63 16
26 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16
27 C -0.12 -2.56 9.68 22.27 0.22 -2.34 16
28 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16
29 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16
30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16
31 H 0.06 1.41 7.56 -2.38 -0.02 1.39 16
32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16
33 H 0.04 1.32 6.31 -2.39 -0.02 1.30 16
34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16
35 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16
36 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16
37 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16
38 H 0.09 2.78 8.11 -2.39 -0.02 2.76 16
39 H 0.06 2.58 7.95 -2.39 -0.02 2.56 16
40 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16
41 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16
42 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16
43 H 0.05 2.87 6.24 -2.39 -0.01 2.85 16
44 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16
45 H 0.08 2.89 3.92 -2.39 -0.01 2.88 16
46 H 0.12 2.68 7.64 -2.91 -0.02 2.66 16
47 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16
48 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16
49 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16
50 H 0.12 2.35 8.06 -2.91 -0.02 2.33 16
Total: -1.00 -67.12 390.04 1.80 -65.31
By element:
Atomic # 1 Polarization: 17.21 SS G_CDS: 0.89 Total: 18.10 kcal
Atomic # 6 Polarization: -10.87 SS G_CDS: 6.15 Total: -4.73 kcal
Atomic # 7 Polarization: -108.46 SS G_CDS: -5.97 Total: -114.43 kcal
Atomic # 8 Polarization: -10.64 SS G_CDS: -1.29 Total: -11.93 kcal
Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal
Total: -67.12 1.80 -65.31 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000589985014.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 59.466 kcal
(2) G-P(sol) polarization free energy of solvation -67.118 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.652 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.804 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.313 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.848 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds