Wall clock time and date at job start Tue Mar 31 2020 12:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.47267 * 2 1 4 4 N 1.46901 * 109.47286 * 239.99847 * 2 1 3 5 5 C 1.46902 * 111.00097 * 176.04064 * 4 2 1 6 6 C 1.39894 * 111.00114 * 299.99962 * 4 2 1 7 7 C 1.38712 * 120.09706 * 300.00125 * 6 4 2 8 8 C 1.38217 * 119.99236 * 179.97438 * 7 6 4 9 9 C 1.38291 * 120.19633 * 359.97438 * 8 7 6 10 10 C 1.38232 * 120.19652 * 0.02562 * 9 8 7 11 11 C 1.38665 * 120.00368 * 359.73995 * 10 9 8 12 12 N 1.40155 * 120.09764 * 180.25920 * 11 10 9 13 13 C 1.34777 * 120.00225 * 24.80169 * 12 11 10 14 14 O 1.21297 * 119.99514 * 5.54194 * 13 12 11 15 15 C 1.50692 * 120.00069 * 185.53475 * 13 12 11 16 16 C 1.53002 * 109.47224 * 180.02562 * 15 13 12 17 17 C 1.52995 * 109.47259 * 179.97438 * 16 15 13 18 18 C 1.53009 * 109.47102 * 179.97438 * 17 16 15 19 19 C 1.50692 * 109.47067 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00485 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00110 * 179.97438 * 19 18 17 22 22 N 1.31518 * 120.00453 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99796 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47088 * 89.99600 * 23 21 19 25 25 H 1.48502 * 109.47026 * 209.99748 * 23 21 19 26 26 H 1.48497 * 109.47005 * 329.99804 * 23 21 19 27 27 H 1.09001 * 109.46528 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46764 * 300.00125 * 1 2 3 29 29 H 1.08992 * 109.47027 * 59.99816 * 1 2 3 30 30 H 1.09002 * 109.47323 * 119.99735 * 2 1 3 31 31 H 1.08999 * 109.46901 * 60.00057 * 3 2 1 32 32 H 1.08993 * 109.47180 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46732 * 300.00097 * 3 2 1 34 34 H 1.09003 * 109.46503 * 60.00422 * 5 4 2 35 35 H 1.09000 * 109.46801 * 180.02562 * 5 4 2 36 36 H 1.08993 * 109.47719 * 300.00508 * 5 4 2 37 37 H 1.08001 * 120.00697 * 359.95099 * 7 6 4 38 38 H 1.07998 * 119.90514 * 179.97438 * 8 7 6 39 39 H 1.07994 * 119.90232 * 179.97438 * 9 8 7 40 40 H 1.08001 * 119.99559 * 180.02562 * 10 9 8 41 41 H 0.97005 * 119.99813 * 204.80984 * 12 11 10 42 42 H 1.09007 * 109.47133 * 300.00144 * 15 13 12 43 43 H 1.09004 * 109.47516 * 60.00096 * 15 13 12 44 44 H 1.09007 * 109.46773 * 299.99863 * 16 15 13 45 45 H 1.09004 * 109.47206 * 59.99403 * 16 15 13 46 46 H 1.08994 * 109.47394 * 299.99831 * 17 16 15 47 47 H 1.09003 * 109.47417 * 60.00147 * 17 16 15 48 48 H 1.08998 * 109.46722 * 299.99859 * 18 17 16 49 49 H 1.08993 * 109.46694 * 59.99801 * 18 17 16 50 50 H 0.96997 * 120.00220 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 3.4852 -0.6306 -1.2816 6 6 1.5712 -2.0172 -1.2317 7 6 1.9087 -2.8910 -0.2086 8 6 1.4639 -4.1992 -0.2425 9 6 0.6820 -4.6410 -1.2940 10 6 0.3409 -3.7771 -2.3178 11 6 0.7786 -2.4616 -2.2897 12 7 0.4294 -1.5825 -3.3239 13 6 -0.6813 -1.8074 -4.0534 14 8 -1.4320 -2.7112 -3.7521 15 6 -0.9905 -0.9359 -5.2433 16 6 -2.2973 -1.4002 -5.8896 17 6 -2.6116 -0.5150 -7.0972 18 6 -3.9182 -0.9797 -7.7439 19 6 -4.2274 -0.1082 -8.9338 20 1 -3.5592 0.6969 -9.2018 21 6 -5.3634 -0.3386 -9.6804 22 7 -5.6336 0.4222 -10.7186 23 14 -6.5195 -1.7307 -9.2165 24 1 -7.5453 -1.2270 -8.2681 25 1 -7.1865 -2.2481 -10.4383 26 1 -5.7458 -2.8234 -8.5744 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6768 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 3.9187 -1.1063 -0.4019 35 1 3.8209 -1.1505 -2.1789 36 1 3.8030 0.4110 -1.3252 37 1 2.5192 -2.5493 0.6141 38 1 1.7278 -4.8785 0.5546 39 1 0.3374 -5.6643 -1.3159 40 1 -0.2703 -4.1255 -3.1372 41 1 0.9873 -0.8122 -3.5147 42 1 -1.0941 0.0994 -4.9183 43 1 -0.1799 -1.0098 -5.9683 44 1 -2.1941 -2.4355 -6.2145 45 1 -3.1077 -1.3260 -5.1644 46 1 -2.7149 0.5201 -6.7720 47 1 -1.8013 -0.5888 -7.8226 48 1 -3.8144 -2.0148 -8.0693 49 1 -4.7286 -0.9063 -7.0188 50 1 -6.4330 0.2603 -11.2436 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591833173.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:25 Heat of formation + Delta-G solvation = -19.340104 kcal Electronic energy + Delta-G solvation = -26529.028968 eV Core-core repulsion = 22941.677781 eV Total energy + Delta-G solvation = -3587.351186 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.02227 -39.48709 -37.39893 -35.19106 -34.72824 -32.70625 -32.60130 -30.70742 -30.10455 -29.33279 -27.49741 -25.97834 -25.47977 -23.55289 -22.56828 -21.55445 -20.41041 -20.04966 -19.95983 -18.05870 -16.97929 -16.84527 -16.53169 -16.05311 -15.81295 -15.40152 -14.92894 -14.77657 -14.37481 -14.20576 -14.00544 -13.71953 -13.54523 -13.03296 -12.87944 -12.64955 -12.58422 -12.53198 -12.32267 -12.17823 -12.07194 -11.98058 -11.74118 -11.59636 -11.47494 -11.16728 -11.11567 -10.73985 -10.61114 -10.53256 -9.92100 -9.79026 -9.63922 -9.43070 -9.11167 -8.96381 -8.91756 -8.48359 -8.13819 -5.99551 -3.97003 1.02380 1.15204 2.59525 2.98163 3.36174 3.37047 3.43166 3.49088 3.59986 4.50998 4.51450 4.57206 4.64048 4.70207 4.86170 4.90095 4.94808 4.98789 5.10929 5.20659 5.26702 5.28286 5.30391 5.35303 5.36031 5.43278 5.47867 5.51535 5.59320 5.66780 5.77339 5.82829 5.96115 6.01235 6.02361 6.10869 6.14778 6.29095 6.36595 6.42762 6.54690 6.64937 6.68185 6.82005 6.99668 7.09913 7.36602 7.39108 7.51805 7.85800 8.09535 8.59340 9.05535 9.63840 11.13956 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.018980 B = 0.002362 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.900568 B =11849.965717 C =12692.218209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.083 3.917 3 C -0.148 4.148 4 N -0.501 5.501 5 C 0.024 3.976 6 C 0.052 3.948 7 C -0.129 4.129 8 C -0.136 4.136 9 C -0.100 4.100 10 C -0.131 4.131 11 C 0.181 3.819 12 N -0.664 5.664 13 C 0.511 3.489 14 O -0.519 6.519 15 C -0.137 4.137 16 C -0.106 4.106 17 C -0.103 4.103 18 C -0.015 4.015 19 C -0.519 4.519 20 H 0.071 0.929 21 C 0.064 3.936 22 N -0.906 5.906 23 Si 0.880 3.120 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.264 1.264 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.029 0.971 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.150 0.850 41 H 0.417 0.583 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.053 0.947 47 H 0.053 0.947 48 H 0.015 0.985 49 H 0.011 0.989 50 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.261 -3.663 25.588 33.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 C -0.206 4.206 4 N -0.224 5.224 5 C -0.123 4.123 6 C -0.044 4.044 7 C -0.150 4.150 8 C -0.156 4.156 9 C -0.119 4.119 10 C -0.151 4.151 11 C 0.084 3.916 12 N -0.307 5.307 13 C 0.300 3.700 14 O -0.394 6.394 15 C -0.177 4.177 16 C -0.144 4.144 17 C -0.140 4.140 18 C -0.053 4.053 19 C -0.557 4.557 20 H 0.089 0.911 21 C -0.136 4.136 22 N -0.545 5.545 23 Si 0.707 3.293 24 H -0.203 1.203 25 H -0.215 1.215 26 H -0.189 1.189 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.048 0.952 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.143 0.857 40 H 0.167 0.833 41 H 0.254 0.746 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.034 0.966 49 H 0.029 0.971 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 20.372 -3.961 25.159 32.614 hybrid contribution -0.014 -0.667 0.840 1.073 sum 20.358 -4.628 26.000 33.344 Atomic orbital electron populations 1.21821 0.93820 1.02402 1.02197 1.21691 0.96117 0.94611 0.89901 1.21936 1.00985 0.95013 1.02662 1.59622 1.10700 1.11586 1.40463 1.22509 0.86031 1.02577 1.01146 1.18359 1.02195 0.89492 0.94338 1.21315 1.00970 0.94287 0.98395 1.20957 0.99766 0.95644 0.99223 1.21103 0.97300 0.99683 0.93807 1.21466 1.01515 0.91236 1.00931 1.17678 0.96115 0.89475 0.88290 1.43643 1.26544 1.28423 1.32116 1.21303 0.79378 0.85274 0.84008 1.90665 1.47513 1.32066 1.69146 1.21793 1.01661 0.99728 0.94541 1.21496 0.94264 1.00524 0.98134 1.21476 0.99569 0.98113 0.94861 1.19573 0.92901 0.96850 0.95940 1.21183 1.08298 1.15820 1.10410 0.91102 1.25045 0.97708 0.96123 0.94749 1.69921 1.26898 1.39378 1.18352 0.86775 0.81250 0.83378 0.77901 1.20324 1.21473 1.18891 0.92515 0.92158 0.91765 0.93867 0.91992 0.92414 0.91457 0.95192 0.91233 0.90422 0.86408 0.86262 0.85745 0.83280 0.74618 0.88681 0.88610 0.91719 0.91722 0.92817 0.92795 0.96624 0.97065 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.07 37.16 0.34 -0.92 16 2 C 0.08 0.62 2.45 -67.71 -0.17 0.45 16 3 C -0.15 -0.87 8.83 37.16 0.33 -0.54 16 4 N -0.50 -3.96 3.95 -171.16 -0.68 -4.64 16 5 C 0.02 0.15 8.84 60.07 0.53 0.68 16 6 C 0.05 0.50 3.33 -83.55 -0.28 0.22 16 7 C -0.13 -1.14 8.62 -39.41 -0.34 -1.48 16 8 C -0.14 -1.20 10.04 -39.57 -0.40 -1.60 16 9 C -0.10 -1.01 10.04 -39.56 -0.40 -1.40 16 10 C -0.13 -1.59 8.72 -39.43 -0.34 -1.93 16 11 C 0.18 2.06 6.45 -83.44 -0.54 1.52 16 12 N -0.66 -7.14 5.28 -9.71 -0.05 -7.19 16 13 C 0.51 6.73 7.64 -10.99 -0.08 6.64 16 14 O -0.52 -8.61 13.15 5.54 0.07 -8.53 16 15 C -0.14 -1.69 5.70 -27.89 -0.16 -1.85 16 16 C -0.11 -1.74 4.50 -26.73 -0.12 -1.86 16 17 C -0.10 -2.00 5.15 -26.73 -0.14 -2.13 16 18 C -0.02 -0.37 4.04 -27.88 -0.11 -0.49 16 19 C -0.52 -15.10 9.66 -34.44 -0.33 -15.43 16 20 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 21 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 22 N -0.91 -28.44 13.96 55.43 0.77 -27.67 16 23 Si 0.88 22.38 27.47 -169.99 -4.67 17.72 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 27 H 0.06 0.60 7.22 -51.93 -0.37 0.22 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.04 0.32 7.13 -51.93 -0.37 -0.05 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.29 6.35 -51.93 -0.33 -0.04 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.03 0.18 7.48 -51.93 -0.39 -0.21 16 35 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 36 H 0.08 0.40 6.24 -51.93 -0.32 0.07 16 37 H 0.12 0.86 7.05 -52.49 -0.37 0.49 16 38 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 40 H 0.15 2.07 5.79 -52.49 -0.30 1.77 16 41 H 0.42 3.62 8.27 -40.82 -0.34 3.28 16 42 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.06 1.11 8.10 -51.93 -0.42 0.69 16 45 H 0.06 1.12 8.10 -51.93 -0.42 0.70 16 46 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 49 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 50 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 395.28 15.07 5.96 5.96 Total: -1.00 -33.18 395.28 -9.54 -42.72 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -8.64 Total: -0.07 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: -2.31 Total: -18.29 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.05 Total: -39.50 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.07 Total: -8.53 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.67 Total: 17.72 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.18 -9.54 -42.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591833173.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.382 kcal (2) G-P(sol) polarization free energy of solvation -33.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds