Wall clock time and date at job start Tue Mar 31 2020 12:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.47267 * 2 1 4 4 N 1.46901 * 109.47286 * 239.99847 * 2 1 3 5 5 C 1.46902 * 111.00097 * 176.04064 * 4 2 1 6 6 C 1.39894 * 111.00114 * 299.99962 * 4 2 1 7 7 C 1.38712 * 120.09706 * 300.00125 * 6 4 2 8 8 C 1.38217 * 119.99236 * 179.97438 * 7 6 4 9 9 C 1.38291 * 120.19633 * 359.97438 * 8 7 6 10 10 C 1.38232 * 120.19652 * 0.02562 * 9 8 7 11 11 C 1.38665 * 120.00368 * 359.73995 * 10 9 8 12 12 N 1.40155 * 120.09764 * 180.25920 * 11 10 9 13 13 C 1.34777 * 120.00225 * 24.80169 * 12 11 10 14 14 O 1.21297 * 119.99514 * 5.54194 * 13 12 11 15 15 C 1.50692 * 120.00069 * 185.53475 * 13 12 11 16 16 C 1.53002 * 109.47224 * 180.02562 * 15 13 12 17 17 C 1.52995 * 109.47259 * 179.97438 * 16 15 13 18 18 C 1.53009 * 109.47102 * 179.97438 * 17 16 15 19 19 C 1.50692 * 109.47067 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00485 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00110 * 179.97438 * 19 18 17 22 22 N 1.31518 * 120.00453 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99796 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47088 * 89.99600 * 23 21 19 25 25 H 1.48502 * 109.47026 * 209.99748 * 23 21 19 26 26 H 1.48497 * 109.47005 * 329.99804 * 23 21 19 27 27 H 1.09001 * 109.46528 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46764 * 300.00125 * 1 2 3 29 29 H 1.08992 * 109.47027 * 59.99816 * 1 2 3 30 30 H 1.09002 * 109.47323 * 119.99735 * 2 1 3 31 31 H 1.08999 * 109.46901 * 60.00057 * 3 2 1 32 32 H 1.08993 * 109.47180 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46732 * 300.00097 * 3 2 1 34 34 H 1.09003 * 109.46503 * 60.00422 * 5 4 2 35 35 H 1.09000 * 109.46801 * 180.02562 * 5 4 2 36 36 H 1.08993 * 109.47719 * 300.00508 * 5 4 2 37 37 H 1.08001 * 120.00697 * 359.95099 * 7 6 4 38 38 H 1.07998 * 119.90514 * 179.97438 * 8 7 6 39 39 H 1.07994 * 119.90232 * 179.97438 * 9 8 7 40 40 H 1.08001 * 119.99559 * 180.02562 * 10 9 8 41 41 H 0.97005 * 119.99813 * 204.80984 * 12 11 10 42 42 H 1.09007 * 109.47133 * 300.00144 * 15 13 12 43 43 H 1.09004 * 109.47516 * 60.00096 * 15 13 12 44 44 H 1.09007 * 109.46773 * 299.99863 * 16 15 13 45 45 H 1.09004 * 109.47206 * 59.99403 * 16 15 13 46 46 H 1.08994 * 109.47394 * 299.99831 * 17 16 15 47 47 H 1.09003 * 109.47417 * 60.00147 * 17 16 15 48 48 H 1.08998 * 109.46722 * 299.99859 * 18 17 16 49 49 H 1.08993 * 109.46694 * 59.99801 * 18 17 16 50 50 H 0.96997 * 120.00220 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 3.4852 -0.6306 -1.2816 6 6 1.5712 -2.0172 -1.2317 7 6 1.9087 -2.8910 -0.2086 8 6 1.4639 -4.1992 -0.2425 9 6 0.6820 -4.6410 -1.2940 10 6 0.3409 -3.7771 -2.3178 11 6 0.7786 -2.4616 -2.2897 12 7 0.4294 -1.5825 -3.3239 13 6 -0.6813 -1.8074 -4.0534 14 8 -1.4320 -2.7112 -3.7521 15 6 -0.9905 -0.9359 -5.2433 16 6 -2.2973 -1.4002 -5.8896 17 6 -2.6116 -0.5150 -7.0972 18 6 -3.9182 -0.9797 -7.7439 19 6 -4.2274 -0.1082 -8.9338 20 1 -3.5592 0.6969 -9.2018 21 6 -5.3634 -0.3386 -9.6804 22 7 -5.6336 0.4222 -10.7186 23 14 -6.5195 -1.7307 -9.2165 24 1 -7.5453 -1.2270 -8.2681 25 1 -7.1865 -2.2481 -10.4383 26 1 -5.7458 -2.8234 -8.5744 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6768 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 3.9187 -1.1063 -0.4019 35 1 3.8209 -1.1505 -2.1789 36 1 3.8030 0.4110 -1.3252 37 1 2.5192 -2.5493 0.6141 38 1 1.7278 -4.8785 0.5546 39 1 0.3374 -5.6643 -1.3159 40 1 -0.2703 -4.1255 -3.1372 41 1 0.9873 -0.8122 -3.5147 42 1 -1.0941 0.0994 -4.9183 43 1 -0.1799 -1.0098 -5.9683 44 1 -2.1941 -2.4355 -6.2145 45 1 -3.1077 -1.3260 -5.1644 46 1 -2.7149 0.5201 -6.7720 47 1 -1.8013 -0.5888 -7.8226 48 1 -3.8144 -2.0148 -8.0693 49 1 -4.7286 -0.9063 -7.0188 50 1 -6.4330 0.2603 -11.2436 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591833173.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:25 Heat of formation + Delta-G solvation = -38.794395 kcal Electronic energy + Delta-G solvation = -26529.872569 eV Core-core repulsion = 22941.677781 eV Total energy + Delta-G solvation = -3588.194788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.84805 -40.35337 -38.10100 -36.71544 -35.72979 -34.61335 -33.31376 -32.15848 -30.88429 -30.34522 -28.15554 -27.50678 -26.08488 -24.61958 -23.66961 -22.64595 -21.70286 -21.25160 -20.77890 -18.91276 -18.79208 -17.88122 -17.54390 -16.96634 -16.62027 -16.34646 -16.08989 -15.76555 -15.62162 -15.31364 -15.09200 -14.81102 -14.56197 -14.11660 -14.04090 -13.68186 -13.56937 -13.53000 -13.47640 -13.16097 -13.02033 -12.86209 -12.79711 -12.61613 -12.33787 -12.24502 -12.08151 -12.05846 -11.75451 -11.74769 -11.51147 -11.46038 -11.32655 -11.25200 -10.75674 -10.71766 -9.72369 -9.50753 -8.95170 -8.29319 -6.32287 0.26305 0.36556 1.35003 1.36416 1.49287 1.63288 2.08944 2.36183 2.73938 2.85217 3.06128 3.70647 3.94635 3.98155 4.00186 4.01722 4.14699 4.16824 4.31849 4.35924 4.45119 4.49279 4.55263 4.64076 4.64856 4.70027 4.76383 4.76791 4.83683 4.86230 4.88015 4.93575 4.99858 5.08915 5.14287 5.19212 5.24488 5.27247 5.28222 5.35316 5.43223 5.52947 5.59718 5.61724 5.66386 5.69320 5.88119 6.00440 6.30067 6.39285 6.51665 6.75824 7.16037 7.32531 8.87306 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.018980 B = 0.002362 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.900568 B =11849.965717 C =12692.218209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.085 3.915 3 C -0.143 4.143 4 N -0.507 5.507 5 C 0.024 3.976 6 C 0.059 3.941 7 C -0.131 4.131 8 C -0.131 4.131 9 C -0.109 4.109 10 C -0.153 4.153 11 C 0.158 3.842 12 N -0.649 5.649 13 C 0.512 3.488 14 O -0.560 6.560 15 C -0.128 4.128 16 C -0.096 4.096 17 C -0.094 4.094 18 C -0.017 4.017 19 C -0.530 4.530 20 H 0.037 0.963 21 C 0.003 3.997 22 N -0.951 5.951 23 Si 0.947 3.053 24 H -0.267 1.267 25 H -0.282 1.282 26 H -0.252 1.252 27 H 0.033 0.967 28 H 0.071 0.929 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.036 0.964 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.138 0.862 38 H 0.145 0.855 39 H 0.137 0.863 40 H 0.125 0.875 41 H 0.427 0.573 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.057 0.943 47 H 0.057 0.943 48 H 0.014 0.986 49 H 0.012 0.988 50 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.888 -3.967 28.034 36.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.022 4.022 3 C -0.201 4.201 4 N -0.230 5.230 5 C -0.122 4.122 6 C -0.038 4.038 7 C -0.151 4.151 8 C -0.151 4.151 9 C -0.128 4.128 10 C -0.174 4.174 11 C 0.062 3.938 12 N -0.293 5.293 13 C 0.302 3.698 14 O -0.438 6.438 15 C -0.168 4.168 16 C -0.135 4.135 17 C -0.131 4.131 18 C -0.054 4.054 19 C -0.568 4.568 20 H 0.055 0.945 21 C -0.193 4.193 22 N -0.592 5.592 23 Si 0.771 3.229 24 H -0.193 1.193 25 H -0.208 1.208 26 H -0.176 1.176 27 H 0.052 0.948 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.156 0.844 38 H 0.163 0.837 39 H 0.155 0.845 40 H 0.143 0.857 41 H 0.266 0.734 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.032 0.968 49 H 0.031 0.969 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 22.048 -4.245 27.625 35.599 hybrid contribution -0.442 -0.512 0.106 0.685 sum 21.606 -4.757 27.731 35.475 Atomic orbital electron populations 1.21790 0.95061 1.00840 1.02204 1.21710 0.95036 0.95617 0.89802 1.21899 1.01712 0.93720 1.02753 1.59627 1.11828 1.10600 1.40911 1.22560 0.84743 1.03589 1.01309 1.18440 1.01180 0.90419 0.93713 1.21596 1.00739 0.94187 0.98570 1.21268 0.98519 0.96146 0.99119 1.21299 0.97640 1.00125 0.93738 1.21408 1.02363 0.92347 1.01278 1.17836 0.97319 0.89412 0.89247 1.43431 1.25814 1.28486 1.31598 1.21375 0.79525 0.84728 0.84212 1.90661 1.49017 1.33814 1.70309 1.21686 1.00084 1.00454 0.94563 1.21280 0.96229 0.99284 0.96658 1.21335 0.97139 0.98777 0.95887 1.19571 0.95563 0.95824 0.94450 1.21548 1.07733 1.15551 1.11959 0.94464 1.25995 0.99712 0.98966 0.94646 1.70061 1.27892 1.41481 1.19757 0.85698 0.79040 0.80168 0.78002 1.19252 1.20755 1.17550 0.94766 0.91008 0.92921 0.93342 0.91216 0.91193 0.92083 0.94499 0.91566 0.89010 0.84411 0.83675 0.84523 0.85731 0.73407 0.86461 0.86310 0.92771 0.92857 0.92427 0.92406 0.96768 0.96920 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.07 71.98 0.65 -1.63 16 2 C 0.08 1.06 2.45 44.92 0.11 1.17 16 3 C -0.14 -1.31 8.83 71.98 0.64 -0.67 16 4 N -0.51 -6.99 3.95 -695.44 -2.75 -9.74 16 5 C 0.02 0.24 8.84 127.69 1.13 1.37 16 6 C 0.06 1.04 3.33 38.26 0.13 1.17 16 7 C -0.13 -2.02 8.62 22.38 0.19 -1.82 16 8 C -0.13 -2.05 10.04 22.28 0.22 -1.83 16 9 C -0.11 -2.14 10.04 22.28 0.22 -1.92 16 10 C -0.15 -3.80 8.72 22.37 0.20 -3.61 16 11 C 0.16 3.55 6.45 38.21 0.25 3.80 16 12 N -0.65 -13.59 5.28 -303.03 -1.60 -15.19 16 13 C 0.51 13.33 7.64 87.65 0.67 14.00 16 14 O -0.56 -19.06 13.15 -3.08 -0.04 -19.11 16 15 C -0.13 -2.97 5.70 29.85 0.17 -2.80 16 16 C -0.10 -3.10 4.50 30.59 0.14 -2.96 16 17 C -0.09 -3.59 5.15 30.60 0.16 -3.44 16 18 C -0.02 -0.81 4.04 29.85 0.12 -0.69 16 19 C -0.53 -31.35 9.66 25.60 0.25 -31.10 16 20 H 0.04 2.38 7.99 -2.91 -0.02 2.35 16 21 C 0.00 0.20 5.47 84.65 0.46 0.67 16 22 N -0.95 -60.84 13.96 21.45 0.30 -60.54 16 23 Si 0.95 46.17 27.47 68.60 1.88 48.06 16 24 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 25 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 26 H -0.25 -11.66 6.54 99.48 0.65 -11.01 16 27 H 0.03 0.70 7.22 -2.39 -0.02 0.68 16 28 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.05 0.57 7.13 -2.39 -0.02 0.56 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.48 6.35 -2.39 -0.02 0.46 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.04 0.32 7.48 -2.39 -0.02 0.30 16 35 H 0.07 0.71 8.13 -2.39 -0.02 0.69 16 36 H 0.09 0.66 6.24 -2.39 -0.01 0.64 16 37 H 0.14 1.56 7.05 -2.91 -0.02 1.54 16 38 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 39 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 40 H 0.12 3.70 5.79 -2.91 -0.02 3.68 16 41 H 0.43 6.84 8.27 -92.70 -0.77 6.07 16 42 H 0.12 2.23 8.14 -2.38 -0.02 2.21 16 43 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.05 1.85 8.10 -2.38 -0.02 1.83 16 45 H 0.05 1.83 8.10 -2.39 -0.02 1.81 16 46 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 48 H 0.01 0.69 7.20 -2.39 -0.02 0.67 16 49 H 0.01 0.60 7.57 -2.39 -0.02 0.59 16 50 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -73.58 395.28 3.59 -69.99 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.09 Total: 16.82 kcal Atomic # 6 Polarization: -36.01 SS G_CDS: 5.70 Total: -30.31 kcal Atomic # 7 Polarization: -81.41 SS G_CDS: -4.05 Total: -85.46 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.04 Total: -19.11 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.88 Total: 48.06 kcal Total: -73.58 3.59 -69.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591833173.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.198 kcal (2) G-P(sol) polarization free energy of solvation -73.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds