Wall clock time and date at job start Tue Mar 31 2020 12:11:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53006 * 109.47047 * 2 1
4 4 H 1.08999 * 109.46912 * 54.73611 * 3 2 1
5 5 C 1.53000 * 109.47273 * 174.74077 * 3 2 1
6 6 N 1.46505 * 109.46712 * 294.29917 * 5 3 2
7 7 C 1.34780 * 119.99735 * 176.29888 * 6 5 3
8 8 O 1.21280 * 119.99703 * 0.02562 * 7 6 5
9 9 C 1.50695 * 120.00032 * 180.02562 * 7 6 5
10 10 H 1.09004 * 109.47174 * 320.00034 * 9 7 6
11 11 N 1.46896 * 109.47123 * 200.00004 * 9 7 6
12 12 C 1.53006 * 109.47073 * 79.99861 * 9 7 6
13 13 C 1.52997 * 109.46990 * 184.99778 * 12 9 7
14 14 C 1.53001 * 109.47209 * 180.02562 * 13 12 9
15 15 C 1.50700 * 109.47469 * 180.02562 * 14 13 12
16 16 H 1.08001 * 119.99886 * 359.97438 * 15 14 13
17 17 C 1.37873 * 119.99915 * 180.02562 * 15 14 13
18 18 N 1.31516 * 119.99723 * 179.97438 * 17 15 14
19 19 Si 1.86797 * 120.00268 * 359.97438 * 17 15 14
20 20 H 1.48502 * 109.47012 * 90.00260 * 19 17 15
21 21 H 1.48501 * 109.47265 * 210.00282 * 19 17 15
22 22 H 1.48499 * 109.46917 * 330.00081 * 19 17 15
23 23 C 1.50703 * 109.47016 * 294.73784 * 3 2 1
24 24 C 1.38232 * 119.99918 * 299.72978 * 23 3 2
25 25 C 1.38235 * 119.99696 * 179.81206 * 24 23 3
26 26 C 1.38241 * 120.00277 * 0.39148 * 25 24 23
27 27 C 1.38229 * 119.99766 * 359.85848 * 26 25 24
28 28 C 1.38239 * 119.99711 * 119.99891 * 23 3 2
29 29 H 1.08998 * 109.47141 * 65.42415 * 1 2 3
30 30 H 1.08999 * 109.46929 * 185.43172 * 1 2 3
31 31 H 1.09004 * 109.46919 * 305.42936 * 1 2 3
32 32 H 1.08994 * 109.47317 * 240.00231 * 2 1 3
33 33 H 1.08996 * 109.47363 * 119.99340 * 2 1 3
34 34 H 1.08997 * 109.47297 * 174.30458 * 5 3 2
35 35 H 1.08997 * 109.47157 * 54.29630 * 5 3 2
36 36 H 0.96998 * 120.00046 * 356.30176 * 6 5 3
37 37 H 1.00906 * 110.99552 * 176.04449 * 11 9 7
38 38 H 1.00898 * 111.00545 * 300.00130 * 11 9 7
39 39 H 1.09003 * 109.46703 * 65.00200 * 12 9 7
40 40 H 1.08993 * 109.47363 * 305.00377 * 12 9 7
41 41 H 1.09003 * 109.47052 * 60.00636 * 13 12 9
42 42 H 1.08993 * 109.47556 * 300.00480 * 13 12 9
43 43 H 1.09005 * 109.46879 * 300.00183 * 14 13 12
44 44 H 1.09002 * 109.47094 * 59.99767 * 14 13 12
45 45 H 0.96996 * 120.00167 * 179.97438 * 18 17 15
46 46 H 1.08003 * 120.00391 * 359.97438 * 24 23 3
47 47 H 1.08005 * 120.00250 * 180.22901 * 25 24 23
48 48 H 1.07996 * 119.99906 * 179.83581 * 26 25 24
49 49 H 1.08000 * 120.00338 * 179.97438 * 27 26 25
50 50 H 1.08000 * 120.00234 * 359.97438 * 28 23 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 1.6017 1.9828 0.8391
5 6 3.5643 1.4446 0.1322
6 7 3.9412 0.9156 1.4454
7 6 5.2420 0.7531 1.7583
8 8 6.1005 1.0452 0.9530
9 6 5.6298 0.2084 3.1089
10 1 4.9812 0.6366 3.8732
11 7 7.0260 0.5622 3.3970
12 6 5.4793 -1.3142 3.1070
13 6 5.7524 -1.8553 4.5118
14 6 5.6026 -3.3780 4.5099
15 6 5.8709 -3.9110 5.8937
16 1 6.1235 -3.2317 6.6945
17 6 5.7951 -5.2659 6.1373
18 7 6.0297 -5.7310 7.3449
19 14 5.3589 -6.4409 4.7522
20 1 6.6011 -6.8850 4.0703
21 1 4.6508 -7.6215 5.3091
22 1 4.4782 -5.7504 3.7762
23 6 1.6469 2.1143 -1.2905
24 6 2.0921 1.6076 -2.4970
25 6 1.7283 2.2215 -3.6809
26 6 0.9258 3.3470 -3.6578
27 6 0.4849 3.8567 -2.4510
28 6 0.8456 3.2406 -1.2672
29 1 -0.3633 0.4274 -0.9346
30 1 -0.3633 -1.0230 0.0973
31 1 -0.3633 0.5958 0.8374
32 1 1.8933 -0.5138 -0.8899
33 1 1.8934 -0.5137 0.8900
34 1 3.9364 2.4641 0.0308
35 1 3.9976 0.8202 -0.6490
36 1 3.2545 0.6823 2.0896
37 1 7.2906 0.2642 4.3241
38 1 7.6477 0.1766 2.7021
39 1 6.1915 -1.7488 2.4055
40 1 4.4657 -1.5789 2.8063
41 1 5.0402 -1.4208 5.2133
42 1 6.7661 -1.5907 4.8125
43 1 4.5890 -3.6430 4.2091
44 1 6.3150 -3.8123 3.8084
45 1 5.9760 -6.6842 7.5164
46 1 2.7220 0.7305 -2.5150
47 1 2.0730 1.8235 -4.6239
48 1 0.6438 3.8281 -4.5826
49 1 -0.1417 4.7362 -2.4328
50 1 0.5009 3.6387 -0.3243
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000594425541.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:11:10
Heat of formation + Delta-G solvation = -47.217662 kcal
Electronic energy + Delta-G solvation = -26074.328772 eV
Core-core repulsion = 22485.768724 eV
Total energy + Delta-G solvation = -3588.560048 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 318.205 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-40.31285 -39.56850 -36.86323 -35.98580 -33.83966 -33.35814 -31.48337 -31.26934
-31.14226 -29.04120 -27.96083 -25.64820 -23.82143 -23.30918 -22.71154 -22.07214
-20.43189 -20.22450 -19.99667 -17.56051 -17.09980 -16.74882 -16.36440 -15.73566
-15.45172 -15.13761 -14.93132 -14.74347 -14.58454 -14.36319 -14.00595 -13.86962
-13.66724 -13.52028 -13.22262 -13.06961 -12.88290 -12.62464 -12.43470 -12.13187
-12.02917 -11.84561 -11.51746 -11.44022 -11.30140 -11.05310 -11.01443 -10.97127
-10.80798 -10.10117 -9.95216 -9.81512 -9.54666 -9.25406 -9.25136 -9.16608
-9.03636 -8.59113 -8.53283 -6.08860 -4.07344 1.00402 1.07077 2.69000
3.03826 3.26853 3.34531 3.37197 3.45486 4.25155 4.31379 4.40720
4.60837 4.65618 4.67828 4.77662 4.78446 4.80293 4.88199 5.08470
5.13501 5.14403 5.20303 5.22497 5.25351 5.29783 5.34268 5.58679
5.61265 5.63165 5.67404 5.71794 5.77106 5.81487 5.85922 5.96623
6.10908 6.13333 6.19056 6.29136 6.32080 6.40927 6.52603 6.66274
6.78981 7.11342 7.20969 7.33719 7.44880 7.56498 7.74053 8.23483
8.48384 8.95647 9.53564 11.04490
Molecular weight = 318.20amu
Principal moments of inertia in cm(-1)
A = 0.016705 B = 0.002359 C = 0.002179
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1675.771804 B =11867.666667 C =12846.405812
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.119 4.119
3 C -0.061 4.061
4 H 0.086 0.914
5 C 0.130 3.870
6 N -0.733 5.733
7 C 0.524 3.476
8 O -0.534 6.534
9 C 0.076 3.924
10 H 0.100 0.900
11 N -0.830 5.830
12 C -0.150 4.150
13 C -0.101 4.101
14 C -0.013 4.013
15 C -0.522 4.522
16 H 0.072 0.928
17 C 0.066 3.934
18 N -0.903 5.903
19 Si 0.880 3.120
20 H -0.277 1.277
21 H -0.288 1.288
22 H -0.266 1.266
23 C -0.069 4.069
24 C -0.112 4.112
25 C -0.118 4.118
26 C -0.125 4.125
27 C -0.119 4.119
28 C -0.114 4.114
29 H 0.054 0.946
30 H 0.055 0.945
31 H 0.054 0.946
32 H 0.067 0.933
33 H 0.070 0.930
34 H 0.066 0.934
35 H 0.069 0.931
36 H 0.401 0.599
37 H 0.353 0.647
38 H 0.349 0.651
39 H 0.064 0.936
40 H 0.065 0.935
41 H 0.057 0.943
42 H 0.054 0.946
43 H 0.015 0.985
44 H 0.010 0.990
45 H 0.263 0.737
46 H 0.122 0.878
47 H 0.121 0.879
48 H 0.120 0.880
49 H 0.121 0.879
50 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.065 18.082 -19.948 29.926
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.156 4.156
3 C -0.079 4.079
4 H 0.104 0.896
5 C 0.006 3.994
6 N -0.387 5.387
7 C 0.310 3.690
8 O -0.409 6.409
9 C -0.039 4.039
10 H 0.118 0.882
11 N -0.363 5.363
12 C -0.189 4.189
13 C -0.139 4.139
14 C -0.050 4.050
15 C -0.560 4.560
16 H 0.090 0.910
17 C -0.136 4.136
18 N -0.541 5.541
19 Si 0.708 3.292
20 H -0.203 1.203
21 H -0.214 1.214
22 H -0.191 1.191
23 C -0.069 4.069
24 C -0.130 4.130
25 C -0.136 4.136
26 C -0.143 4.143
27 C -0.137 4.137
28 C -0.132 4.132
29 H 0.073 0.927
30 H 0.074 0.926
31 H 0.073 0.927
32 H 0.085 0.915
33 H 0.089 0.911
34 H 0.085 0.915
35 H 0.088 0.912
36 H 0.236 0.764
37 H 0.168 0.832
38 H 0.163 0.837
39 H 0.082 0.918
40 H 0.084 0.916
41 H 0.076 0.924
42 H 0.073 0.927
43 H 0.033 0.967
44 H 0.028 0.972
45 H 0.073 0.927
46 H 0.140 0.860
47 H 0.139 0.861
48 H 0.138 0.862
49 H 0.139 0.861
50 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges -12.647 18.896 -20.521 30.628
hybrid contribution -0.472 -1.910 -0.275 1.987
sum -13.119 16.986 -20.796 29.885
Atomic orbital electron populations
1.21764 0.95353 1.01815 1.01895 1.21642 0.96402 0.94675 1.02904
1.20485 0.94806 0.96992 0.95653 0.89562 1.21329 0.93207 0.99619
0.85269 1.45999 1.07793 1.67450 1.17424 1.20715 0.81942 0.76993
0.89350 1.90665 1.49448 1.49782 1.51037 1.21419 0.93241 0.95136
0.94141 0.88185 1.58668 1.01561 1.67581 1.08452 1.22444 1.02591
0.93307 1.00606 1.21480 1.00878 0.98596 0.92949 1.19558 0.96337
0.91393 0.97746 1.21135 1.47514 0.92952 0.94390 0.91030 1.25047
0.94710 0.98388 0.95423 1.69913 1.49879 1.13900 1.20446 0.86771
0.79052 0.80627 0.82766 1.20322 1.21366 1.19103 1.19620 0.97598
0.95520 0.94209 1.21049 0.99872 1.00118 0.91990 1.21160 0.98195
0.96085 0.98141 1.21159 0.98416 0.96711 0.97980 1.21138 1.00120
0.99932 0.92553 1.21073 0.98320 0.95462 0.98339 0.92675 0.92557
0.92660 0.91462 0.91130 0.91522 0.91226 0.76435 0.83228 0.83735
0.91772 0.91592 0.92394 0.92738 0.96679 0.97202 0.92714 0.85996
0.86086 0.86242 0.86135 0.86083
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.06 9.64 37.16 0.36 -0.70 16
2 C -0.12 -0.88 5.24 -26.73 -0.14 -1.02 16
3 C -0.06 -0.44 2.05 -91.77 -0.19 -0.63 16
4 H 0.09 0.56 7.88 -51.93 -0.41 0.15 16
5 C 0.13 1.24 4.78 -4.04 -0.02 1.22 16
6 N -0.73 -7.47 5.18 -60.29 -0.31 -7.79 16
7 C 0.52 7.16 7.08 -10.99 -0.08 7.08 16
8 O -0.53 -9.23 16.25 5.56 0.09 -9.14 16
9 C 0.08 0.99 3.21 -68.87 -0.22 0.77 16
10 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16
11 N -0.83 -11.36 8.94 -5.65 -0.05 -11.41 16
12 C -0.15 -2.19 4.84 -26.73 -0.13 -2.31 16
13 C -0.10 -1.82 4.92 -26.73 -0.13 -1.95 16
14 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16
15 C -0.52 -14.58 9.66 -34.44 -0.33 -14.91 16
16 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16
17 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16
18 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16
19 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16
20 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16
21 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16
22 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16
23 C -0.07 -0.54 3.87 -104.62 -0.41 -0.94 16
24 C -0.11 -0.90 8.71 -39.58 -0.34 -1.25 16
25 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16
26 C -0.12 -0.88 10.05 -39.58 -0.40 -1.27 16
27 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16
28 C -0.11 -0.84 9.67 -39.58 -0.38 -1.22 16
29 H 0.05 0.41 7.57 -51.93 -0.39 0.02 16
30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16
32 H 0.07 0.52 7.23 -51.93 -0.38 0.15 16
33 H 0.07 0.53 7.20 -51.93 -0.37 0.16 16
34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
35 H 0.07 0.74 7.58 -51.93 -0.39 0.35 16
36 H 0.40 3.19 7.83 -40.82 -0.32 2.87 16
37 H 0.35 4.54 7.55 -39.29 -0.30 4.24 16
38 H 0.35 4.93 8.58 -39.29 -0.34 4.60 16
39 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16
40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16
41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16
42 H 0.05 0.97 6.87 -51.93 -0.36 0.61 16
43 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16
44 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16
45 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16
46 H 0.12 0.92 7.15 -52.48 -0.38 0.54 16
47 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16
48 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16
49 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16
50 H 0.12 0.72 7.95 -52.49 -0.42 0.30 16
LS Contribution 401.48 15.07 6.05 6.05
Total: -1.00 -33.12 401.48 -10.16 -43.28
By element:
Atomic # 1 Polarization: 15.85 SS G_CDS: -8.63 Total: 7.23 kcal
Atomic # 6 Polarization: -14.86 SS G_CDS: -3.42 Total: -18.27 kcal
Atomic # 7 Polarization: -46.43 SS G_CDS: 0.41 Total: -46.02 kcal
Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.14 kcal
Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal
Total LS contribution 6.05 Total: 6.05 kcal
Total: -33.12 -10.16 -43.28 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000594425541.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -3.935 kcal
(2) G-P(sol) polarization free energy of solvation -33.119 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.054 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.163 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.282 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.218 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds