Wall clock time and date at job start Tue Mar 31 2020 12:11:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53006 * 109.47047 * 2 1
4 4 H 1.08999 * 109.46912 * 54.73611 * 3 2 1
5 5 C 1.53000 * 109.47273 * 174.74077 * 3 2 1
6 6 N 1.46505 * 109.46712 * 294.29917 * 5 3 2
7 7 C 1.34780 * 119.99735 * 176.29888 * 6 5 3
8 8 O 1.21280 * 119.99703 * 0.02562 * 7 6 5
9 9 C 1.50695 * 120.00032 * 180.02562 * 7 6 5
10 10 H 1.09004 * 109.47174 * 320.00034 * 9 7 6
11 11 N 1.46896 * 109.47123 * 200.00004 * 9 7 6
12 12 C 1.53006 * 109.47073 * 79.99861 * 9 7 6
13 13 C 1.52997 * 109.46990 * 184.99778 * 12 9 7
14 14 C 1.53001 * 109.47209 * 180.02562 * 13 12 9
15 15 C 1.50700 * 109.47469 * 180.02562 * 14 13 12
16 16 H 1.08001 * 119.99886 * 359.97438 * 15 14 13
17 17 C 1.37873 * 119.99915 * 180.02562 * 15 14 13
18 18 N 1.31516 * 119.99723 * 179.97438 * 17 15 14
19 19 Si 1.86797 * 120.00268 * 359.97438 * 17 15 14
20 20 H 1.48502 * 109.47012 * 90.00260 * 19 17 15
21 21 H 1.48501 * 109.47265 * 210.00282 * 19 17 15
22 22 H 1.48499 * 109.46917 * 330.00081 * 19 17 15
23 23 C 1.50703 * 109.47016 * 294.73784 * 3 2 1
24 24 C 1.38232 * 119.99918 * 299.72978 * 23 3 2
25 25 C 1.38235 * 119.99696 * 179.81206 * 24 23 3
26 26 C 1.38241 * 120.00277 * 0.39148 * 25 24 23
27 27 C 1.38229 * 119.99766 * 359.85848 * 26 25 24
28 28 C 1.38239 * 119.99711 * 119.99891 * 23 3 2
29 29 H 1.08998 * 109.47141 * 65.42415 * 1 2 3
30 30 H 1.08999 * 109.46929 * 185.43172 * 1 2 3
31 31 H 1.09004 * 109.46919 * 305.42936 * 1 2 3
32 32 H 1.08994 * 109.47317 * 240.00231 * 2 1 3
33 33 H 1.08996 * 109.47363 * 119.99340 * 2 1 3
34 34 H 1.08997 * 109.47297 * 174.30458 * 5 3 2
35 35 H 1.08997 * 109.47157 * 54.29630 * 5 3 2
36 36 H 0.96998 * 120.00046 * 356.30176 * 6 5 3
37 37 H 1.00906 * 110.99552 * 176.04449 * 11 9 7
38 38 H 1.00898 * 111.00545 * 300.00130 * 11 9 7
39 39 H 1.09003 * 109.46703 * 65.00200 * 12 9 7
40 40 H 1.08993 * 109.47363 * 305.00377 * 12 9 7
41 41 H 1.09003 * 109.47052 * 60.00636 * 13 12 9
42 42 H 1.08993 * 109.47556 * 300.00480 * 13 12 9
43 43 H 1.09005 * 109.46879 * 300.00183 * 14 13 12
44 44 H 1.09002 * 109.47094 * 59.99767 * 14 13 12
45 45 H 0.96996 * 120.00167 * 179.97438 * 18 17 15
46 46 H 1.08003 * 120.00391 * 359.97438 * 24 23 3
47 47 H 1.08005 * 120.00250 * 180.22901 * 25 24 23
48 48 H 1.07996 * 119.99906 * 179.83581 * 26 25 24
49 49 H 1.08000 * 120.00338 * 179.97438 * 27 26 25
50 50 H 1.08000 * 120.00234 * 359.97438 * 28 23 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 1.6017 1.9828 0.8391
5 6 3.5643 1.4446 0.1322
6 7 3.9412 0.9156 1.4454
7 6 5.2420 0.7531 1.7583
8 8 6.1005 1.0452 0.9530
9 6 5.6298 0.2084 3.1089
10 1 4.9812 0.6366 3.8732
11 7 7.0260 0.5622 3.3970
12 6 5.4793 -1.3142 3.1070
13 6 5.7524 -1.8553 4.5118
14 6 5.6026 -3.3780 4.5099
15 6 5.8709 -3.9110 5.8937
16 1 6.1235 -3.2317 6.6945
17 6 5.7951 -5.2659 6.1373
18 7 6.0297 -5.7310 7.3449
19 14 5.3589 -6.4409 4.7522
20 1 6.6011 -6.8850 4.0703
21 1 4.6508 -7.6215 5.3091
22 1 4.4782 -5.7504 3.7762
23 6 1.6469 2.1143 -1.2905
24 6 2.0921 1.6076 -2.4970
25 6 1.7283 2.2215 -3.6809
26 6 0.9258 3.3470 -3.6578
27 6 0.4849 3.8567 -2.4510
28 6 0.8456 3.2406 -1.2672
29 1 -0.3633 0.4274 -0.9346
30 1 -0.3633 -1.0230 0.0973
31 1 -0.3633 0.5958 0.8374
32 1 1.8933 -0.5138 -0.8899
33 1 1.8934 -0.5137 0.8900
34 1 3.9364 2.4641 0.0308
35 1 3.9976 0.8202 -0.6490
36 1 3.2545 0.6823 2.0896
37 1 7.2906 0.2642 4.3241
38 1 7.6477 0.1766 2.7021
39 1 6.1915 -1.7488 2.4055
40 1 4.4657 -1.5789 2.8063
41 1 5.0402 -1.4208 5.2133
42 1 6.7661 -1.5907 4.8125
43 1 4.5890 -3.6430 4.2091
44 1 6.3150 -3.8123 3.8084
45 1 5.9760 -6.6842 7.5164
46 1 2.7220 0.7305 -2.5150
47 1 2.0730 1.8235 -4.6239
48 1 0.6438 3.8281 -4.5826
49 1 -0.1417 4.7362 -2.4328
50 1 0.5009 3.6387 -0.3243
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000594425541.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:11:09
Heat of formation + Delta-G solvation = -68.219446 kcal
Electronic energy + Delta-G solvation = -26075.239478 eV
Core-core repulsion = 22485.768724 eV
Total energy + Delta-G solvation = -3589.470754 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 318.205 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-41.15547 -40.33964 -37.71591 -37.14303 -35.20886 -34.68361 -33.24543 -31.79690
-31.69392 -30.02710 -29.25140 -26.91338 -24.81676 -23.85766 -23.63323 -23.10015
-21.80593 -21.29337 -20.74721 -18.88656 -18.52911 -17.75072 -17.19619 -16.54393
-16.36078 -16.17899 -16.07440 -15.96166 -15.67553 -15.17968 -14.98794 -14.93223
-14.71933 -14.35560 -14.22804 -14.13225 -13.80471 -13.76009 -13.64686 -13.42251
-13.01270 -12.83441 -12.58920 -12.42760 -12.38252 -12.04226 -11.92750 -11.79313
-11.70919 -11.58580 -11.53878 -11.44524 -11.32411 -10.78899 -10.76522 -10.10581
-9.78719 -9.66827 -9.57909 -8.29305 -6.33013 0.45787 0.53133 1.35510
1.36349 1.48113 1.61485 2.13327 2.35359 2.90394 3.06259 3.61774
3.68022 3.69628 3.83762 3.98688 4.02055 4.10431 4.12595 4.18143
4.29286 4.33846 4.39319 4.47447 4.51582 4.58446 4.64135 4.69462
4.72842 4.75252 4.95158 4.97482 5.00921 5.06557 5.08346 5.12417
5.19267 5.22260 5.26970 5.40161 5.45192 5.52408 5.59775 5.61792
5.66376 5.67425 5.73995 6.07461 6.14606 6.28698 6.48845 6.54920
6.75767 7.24696 7.31772 8.87264
Molecular weight = 318.20amu
Principal moments of inertia in cm(-1)
A = 0.016705 B = 0.002359 C = 0.002179
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1675.771804 B =11867.666667 C =12846.405812
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.117 4.117
3 C -0.048 4.048
4 H 0.100 0.900
5 C 0.133 3.867
6 N -0.716 5.716
7 C 0.523 3.477
8 O -0.575 6.575
9 C 0.082 3.918
10 H 0.121 0.879
11 N -0.836 5.836
12 C -0.136 4.136
13 C -0.093 4.093
14 C -0.013 4.013
15 C -0.530 4.530
16 H 0.034 0.966
17 C 0.001 3.999
18 N -0.951 5.951
19 Si 0.950 3.050
20 H -0.271 1.271
21 H -0.285 1.285
22 H -0.244 1.244
23 C -0.078 4.078
24 C -0.128 4.128
25 C -0.130 4.130
26 C -0.132 4.132
27 C -0.127 4.127
28 C -0.122 4.122
29 H 0.049 0.951
30 H 0.054 0.946
31 H 0.063 0.937
32 H 0.059 0.941
33 H 0.072 0.928
34 H 0.055 0.945
35 H 0.057 0.943
36 H 0.415 0.585
37 H 0.356 0.644
38 H 0.345 0.655
39 H 0.055 0.945
40 H 0.081 0.919
41 H 0.061 0.939
42 H 0.051 0.949
43 H 0.022 0.978
44 H 0.011 0.989
45 H 0.265 0.735
46 H 0.120 0.880
47 H 0.132 0.868
48 H 0.137 0.863
49 H 0.139 0.861
50 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.834 18.742 -21.533 32.172
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.155 4.155
3 C -0.067 4.067
4 H 0.119 0.881
5 C 0.010 3.990
6 N -0.369 5.369
7 C 0.309 3.691
8 O -0.453 6.453
9 C -0.033 4.033
10 H 0.138 0.862
11 N -0.368 5.368
12 C -0.176 4.176
13 C -0.131 4.131
14 C -0.050 4.050
15 C -0.568 4.568
16 H 0.053 0.947
17 C -0.196 4.196
18 N -0.592 5.592
19 Si 0.773 3.227
20 H -0.197 1.197
21 H -0.211 1.211
22 H -0.168 1.168
23 C -0.079 4.079
24 C -0.146 4.146
25 C -0.148 4.148
26 C -0.150 4.150
27 C -0.144 4.144
28 C -0.140 4.140
29 H 0.068 0.932
30 H 0.073 0.927
31 H 0.082 0.918
32 H 0.078 0.922
33 H 0.090 0.910
34 H 0.073 0.927
35 H 0.076 0.924
36 H 0.252 0.748
37 H 0.171 0.829
38 H 0.159 0.841
39 H 0.074 0.926
40 H 0.100 0.900
41 H 0.080 0.920
42 H 0.070 0.930
43 H 0.040 0.960
44 H 0.029 0.971
45 H 0.074 0.926
46 H 0.138 0.862
47 H 0.150 0.850
48 H 0.155 0.845
49 H 0.157 0.843
50 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges -14.457 19.576 -22.102 32.874
hybrid contribution 0.083 -2.041 0.264 2.060
sum -14.374 17.535 -21.838 31.480
Atomic orbital electron populations
1.21721 0.94904 1.01860 1.01942 1.21625 0.96728 0.94519 1.02611
1.20383 0.92940 0.97223 0.96105 0.88136 1.21311 0.94754 0.98544
0.84435 1.45883 1.07087 1.66028 1.17906 1.20798 0.82530 0.76731
0.89028 1.90653 1.50777 1.51816 1.52082 1.21405 0.93313 0.94036
0.94548 0.86156 1.58680 1.01931 1.67632 1.08559 1.22263 1.03242
0.94217 0.97876 1.21326 1.01006 0.95417 0.95343 1.19538 0.96455
0.94589 0.94446 1.21533 1.46622 0.92689 0.95989 0.94746 1.26039
0.94817 1.00591 0.98117 1.70070 1.51720 1.14458 1.22969 0.85668
0.79297 0.78108 0.79609 1.19668 1.21080 1.16767 1.19694 0.98055
0.95957 0.94164 1.21176 1.00349 1.00453 0.92580 1.21395 0.98417
0.96435 0.98515 1.21447 0.98067 0.96563 0.98923 1.21438 1.00121
1.00462 0.92420 1.21311 0.98182 0.95274 0.99243 0.93234 0.92670
0.91828 0.92190 0.90984 0.92651 0.92433 0.74786 0.82871 0.84112
0.92608 0.90010 0.91996 0.93039 0.95978 0.97059 0.92600 0.86211
0.84986 0.84530 0.84317 0.84677
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.79 9.64 71.98 0.69 -1.09 16
2 C -0.12 -1.52 5.24 30.60 0.16 -1.36 16
3 C -0.05 -0.62 2.05 -11.54 -0.02 -0.64 16
4 H 0.10 1.03 7.88 -2.39 -0.02 1.01 16
5 C 0.13 2.39 4.78 86.38 0.41 2.80 16
6 N -0.72 -13.15 5.18 -463.06 -2.40 -15.55 16
7 C 0.52 13.44 7.08 87.65 0.62 14.06 16
8 O -0.57 -19.50 16.25 -3.03 -0.05 -19.55 16
9 C 0.08 1.98 3.21 44.17 0.14 2.12 16
10 H 0.12 2.43 8.14 -2.38 -0.02 2.41 16
11 N -0.84 -21.87 8.94 -171.80 -1.54 -23.41 16
12 C -0.14 -3.65 4.84 30.60 0.15 -3.51 16
13 C -0.09 -3.20 4.92 30.59 0.15 -3.05 16
14 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16
15 C -0.53 -29.83 9.66 25.60 0.25 -29.58 16
16 H 0.03 2.12 7.99 -2.91 -0.02 2.10 16
17 C 0.00 0.05 5.47 84.65 0.46 0.52 16
18 N -0.95 -59.28 13.96 21.45 0.30 -58.98 16
19 Si 0.95 43.78 27.47 68.60 1.88 45.66 16
20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16
21 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16
22 H -0.24 -10.30 6.54 99.48 0.65 -9.65 16
23 C -0.08 -1.13 3.87 -19.86 -0.08 -1.20 16
24 C -0.13 -1.98 8.71 22.27 0.19 -1.79 16
25 C -0.13 -1.83 10.05 22.27 0.22 -1.60 16
26 C -0.13 -1.66 10.05 22.27 0.22 -1.44 16
27 C -0.13 -1.54 10.05 22.27 0.22 -1.32 16
28 C -0.12 -1.59 9.67 22.27 0.22 -1.37 16
29 H 0.05 0.66 7.57 -2.39 -0.02 0.64 16
30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16
31 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16
32 H 0.06 0.87 7.23 -2.39 -0.02 0.85 16
33 H 0.07 0.91 7.20 -2.39 -0.02 0.90 16
34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16
35 H 0.06 1.20 7.58 -2.39 -0.02 1.18 16
36 H 0.41 5.37 7.83 -92.71 -0.73 4.65 16
37 H 0.36 8.78 7.55 -89.69 -0.68 8.10 16
38 H 0.35 9.53 8.58 -89.70 -0.77 8.76 16
39 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16
40 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16
41 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16
42 H 0.05 1.78 6.87 -2.39 -0.02 1.77 16
43 H 0.02 0.95 7.20 -2.38 -0.02 0.93 16
44 H 0.01 0.49 7.57 -2.39 -0.02 0.47 16
45 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16
46 H 0.12 1.81 7.15 -2.91 -0.02 1.79 16
47 H 0.13 1.44 8.06 -2.91 -0.02 1.41 16
48 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16
49 H 0.14 1.10 8.06 -2.91 -0.02 1.08 16
50 H 0.14 1.29 7.95 -2.91 -0.02 1.27 16
Total: -1.00 -71.98 401.48 1.04 -70.93
By element:
Atomic # 1 Polarization: 31.10 SS G_CDS: -1.29 Total: 29.80 kcal
Atomic # 6 Polarization: -33.04 SS G_CDS: 4.14 Total: -28.90 kcal
Atomic # 7 Polarization: -94.31 SS G_CDS: -3.64 Total: -97.94 kcal
Atomic # 8 Polarization: -19.50 SS G_CDS: -0.05 Total: -19.55 kcal
Atomic # 14 Polarization: 43.78 SS G_CDS: 1.88 Total: 45.66 kcal
Total: -71.98 1.04 -70.93 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000594425541.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.714 kcal
(2) G-P(sol) polarization free energy of solvation -71.978 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.264 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.045 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.933 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.219 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds