Wall clock time and date at job start Tue Mar 31 2020 12:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47095 * 2 1 4 4 H 1.09007 * 109.47017 * 305.00517 * 3 2 1 5 5 C 1.52995 * 109.47198 * 185.00416 * 3 2 1 6 6 N 1.46900 * 109.47036 * 65.00113 * 3 2 1 7 7 C 1.46895 * 111.00008 * 66.04652 * 6 3 2 8 8 C 1.52998 * 109.47457 * 200.61448 * 7 6 3 9 9 C 1.46904 * 111.00054 * 190.00202 * 6 3 2 10 10 C 1.50693 * 109.47055 * 153.27377 * 9 6 3 11 11 O 1.21292 * 120.00403 * 352.35380 * 10 9 6 12 12 N 1.34781 * 119.99976 * 172.36174 * 10 9 6 13 13 C 1.46491 * 120.00149 * 185.22913 * 12 10 9 14 14 C 1.50698 * 109.47767 * 89.99566 * 13 12 10 15 15 H 1.08004 * 119.99556 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00469 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00101 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00019 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47333 * 60.00043 * 18 16 14 20 20 H 1.48505 * 109.47273 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47244 * 299.99817 * 18 16 14 22 22 C 1.39931 * 119.99674 * 5.22153 * 12 10 9 23 23 C 1.38868 * 120.07179 * 293.15603 * 22 12 10 24 24 C 1.38115 * 119.92632 * 179.75006 * 23 22 12 25 25 C 1.38274 * 120.07346 * 0.52799 * 24 23 22 26 26 C 1.38286 * 120.13770 * 359.74614 * 25 24 23 27 27 C 1.38117 * 120.07291 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.47565 * 59.99818 * 1 2 3 29 29 H 1.08995 * 109.46742 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47139 * 299.99582 * 1 2 3 31 31 H 1.09003 * 109.47139 * 240.00418 * 2 1 3 32 32 H 1.08995 * 109.47470 * 119.99793 * 2 1 3 33 33 H 1.09002 * 109.47156 * 180.02562 * 5 3 2 34 34 H 1.08999 * 109.47141 * 299.99608 * 5 3 2 35 35 H 1.09001 * 109.47268 * 60.00198 * 5 3 2 36 36 H 1.09006 * 109.46872 * 80.61244 * 7 6 3 37 37 H 1.09001 * 109.47159 * 320.61635 * 7 6 3 38 38 H 1.08997 * 109.47279 * 291.43827 * 8 7 6 39 39 H 1.09003 * 109.47047 * 51.43740 * 8 7 6 40 40 H 1.09002 * 109.47165 * 171.43684 * 8 7 6 41 41 H 1.09003 * 109.46634 * 273.27155 * 9 6 3 42 42 H 1.09001 * 109.46992 * 33.26855 * 9 6 3 43 43 H 1.09002 * 109.47248 * 210.00032 * 13 12 10 44 44 H 1.09007 * 109.47100 * 329.99402 * 13 12 10 45 45 H 0.96999 * 120.00202 * 180.02562 * 17 16 14 46 46 H 1.08005 * 120.03335 * 0.02562 * 23 22 12 47 47 H 1.07998 * 119.96020 * 180.27496 * 24 23 22 48 48 H 1.07999 * 119.93545 * 179.72315 * 25 24 23 49 49 H 1.08003 * 119.96181 * 179.97438 * 26 25 24 50 50 H 1.07997 * 120.03143 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1258 6 7 1.6514 2.0993 1.2552 7 6 2.3341 1.4872 2.4029 8 6 1.5641 1.8087 3.6853 9 6 1.9124 3.5438 1.1964 10 6 0.9682 4.2630 2.1249 11 8 0.0688 3.6550 2.6657 12 7 1.1231 5.5821 2.3543 13 6 0.2791 6.2577 3.3428 14 6 0.9442 6.2012 4.6939 15 1 1.9000 5.7107 4.8052 16 6 0.3322 6.7749 5.7882 17 7 -0.8318 7.3718 5.6528 18 14 1.1571 6.7054 7.4627 19 1 2.4764 7.3835 7.3932 20 1 0.3014 7.3902 8.4649 21 1 1.3495 5.2880 7.8614 22 6 2.0903 6.3061 1.6483 23 6 3.4394 6.0492 1.8539 24 6 4.3914 6.7621 1.1516 25 6 4.0026 7.7382 0.2527 26 6 2.6600 8.0004 0.0500 27 6 1.7030 7.2870 0.7448 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3632 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.9281 2.4721 -0.1254 34 1 3.9995 0.9054 0.7160 35 1 3.8531 0.9571 -1.0573 36 1 3.3464 1.8846 2.4776 37 1 2.3771 0.4067 2.2661 38 1 1.6501 2.8731 3.9036 39 1 0.5138 1.5486 3.5533 40 1 1.9797 1.2334 4.5126 41 1 2.9407 3.7398 1.5005 42 1 1.7609 3.8991 0.1772 43 1 0.1386 7.2983 3.0502 44 1 -0.6897 5.7607 3.3938 45 1 -1.2622 7.7757 6.4226 46 1 3.7438 5.2897 2.5589 47 1 5.4406 6.5597 1.3078 48 1 4.7490 8.2974 -0.2919 49 1 2.3595 8.7637 -0.6525 50 1 0.6546 7.4920 0.5857 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595593658.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:07 Heat of formation + Delta-G solvation = -16.796237 kcal Electronic energy + Delta-G solvation = -28441.372535 eV Core-core repulsion = 24854.131659 eV Total energy + Delta-G solvation = -3587.240876 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.52847 -39.91799 -38.93942 -36.41108 -34.79364 -34.34099 -32.08689 -31.74704 -30.95323 -30.38430 -29.08948 -27.33776 -24.90487 -24.46269 -23.88234 -23.33727 -23.06498 -20.50655 -20.19021 -18.73206 -18.37082 -17.63433 -17.23330 -17.00261 -16.59599 -16.26960 -15.85574 -15.73920 -15.10551 -14.83048 -14.68466 -14.48803 -14.38317 -14.26308 -14.19536 -13.97377 -13.58161 -13.53133 -13.38855 -13.21498 -13.02707 -12.69587 -12.66366 -12.65253 -12.43638 -12.30116 -12.09434 -12.03173 -12.00403 -11.85078 -11.71168 -11.52507 -11.23330 -10.72290 -10.66831 -10.03551 -9.82382 -9.23749 -9.06392 -8.24126 -6.39208 0.39770 0.51250 1.32854 1.37060 1.44291 1.82250 2.15203 2.37176 2.87661 3.01032 3.05225 3.69921 3.82925 4.03757 4.10082 4.13570 4.16715 4.21471 4.30552 4.32877 4.38037 4.50584 4.57061 4.61391 4.67727 4.68036 4.69951 4.78384 4.81549 4.86918 4.93052 5.01376 5.10659 5.13717 5.14949 5.17307 5.19936 5.27593 5.39505 5.42670 5.51566 5.55863 5.62791 5.63736 5.68260 5.82183 6.01863 6.04666 6.11192 6.26995 6.67284 6.83964 7.26458 7.50153 8.82578 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.010113 B = 0.005205 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.025976 B = 5378.220006 C = 7035.427559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 C 0.079 3.921 4 H 0.080 0.920 5 C -0.180 4.180 6 N -0.529 5.529 7 C 0.062 3.938 8 C -0.135 4.135 9 C 0.058 3.942 10 C 0.505 3.495 11 O -0.548 6.548 12 N -0.572 5.572 13 C 0.270 3.730 14 C -0.537 4.537 15 H 0.050 0.950 16 C 0.011 3.989 17 N -0.928 5.928 18 Si 0.964 3.036 19 H -0.262 1.262 20 H -0.276 1.276 21 H -0.275 1.275 22 C 0.130 3.870 23 C -0.137 4.137 24 C -0.102 4.102 25 C -0.121 4.121 26 C -0.102 4.102 27 C -0.145 4.145 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.038 0.962 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.041 0.959 37 H 0.095 0.905 38 H 0.021 0.979 39 H 0.044 0.956 40 H 0.058 0.942 41 H 0.077 0.923 42 H 0.104 0.896 43 H 0.014 0.986 44 H 0.003 0.997 45 H 0.267 0.733 46 H 0.112 0.888 47 H 0.153 0.847 48 H 0.159 0.841 49 H 0.151 0.849 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.991 -7.905 -15.818 22.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.145 4.145 3 C -0.029 4.029 4 H 0.098 0.902 5 C -0.238 4.238 6 N -0.253 5.253 7 C -0.066 4.066 8 C -0.192 4.192 9 C -0.073 4.073 10 C 0.294 3.706 11 O -0.425 6.425 12 N -0.301 5.301 13 C 0.150 3.850 14 C -0.575 4.575 15 H 0.069 0.931 16 C -0.188 4.188 17 N -0.567 5.567 18 Si 0.789 3.211 19 H -0.187 1.187 20 H -0.201 1.201 21 H -0.201 1.201 22 C 0.039 3.961 23 C -0.157 4.157 24 C -0.120 4.120 25 C -0.139 4.139 26 C -0.121 4.121 27 C -0.164 4.164 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.059 0.941 37 H 0.113 0.887 38 H 0.040 0.960 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.122 0.878 43 H 0.032 0.968 44 H 0.021 0.979 45 H 0.076 0.924 46 H 0.130 0.870 47 H 0.171 0.829 48 H 0.177 0.823 49 H 0.168 0.832 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 12.809 -8.235 -15.350 21.622 hybrid contribution 0.182 0.518 1.401 1.504 sum 12.992 -7.717 -13.949 20.565 Atomic orbital electron populations 1.21626 0.96291 1.00862 1.01300 1.21592 0.95850 0.94452 1.02653 1.21950 0.94559 0.95991 0.90385 0.90169 1.22458 0.95845 1.02189 1.03349 1.61653 1.59249 1.00549 1.03899 1.22139 0.94535 1.00313 0.89572 1.21762 1.00564 0.99828 0.97083 1.21925 0.96812 0.89460 0.99128 1.21210 0.86053 0.81028 0.82287 1.90647 1.34691 1.65738 1.51384 1.45835 1.36247 1.08697 1.39277 1.18730 0.89514 0.90825 0.85971 1.21539 1.05637 1.36296 0.94032 0.93135 1.25812 0.95425 0.94544 1.03059 1.70045 1.16838 1.37571 1.32263 0.85516 0.78794 0.78376 0.78463 1.18697 1.20137 1.20061 1.18028 0.88817 0.95650 0.93631 1.21351 0.91697 1.02118 1.00551 1.21331 0.99816 0.95319 0.95544 1.21529 0.96134 0.97722 0.98546 1.21321 0.92867 0.98860 0.99030 1.21379 1.00459 0.97674 0.96925 0.93297 0.92497 0.94314 0.89499 0.91747 0.92896 0.92103 0.90192 0.94056 0.88682 0.95958 0.93637 0.92359 0.90533 0.87821 0.96754 0.97936 0.92379 0.87025 0.82926 0.82315 0.83153 0.87255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.80 71.98 0.71 -2.53 16 2 C -0.11 -2.01 5.35 30.60 0.16 -1.85 16 3 C 0.08 1.66 2.26 44.92 0.10 1.76 16 4 H 0.08 1.70 7.79 -2.38 -0.02 1.68 16 5 C -0.18 -2.93 8.57 71.98 0.62 -2.32 16 6 N -0.53 -15.44 3.44 -875.51 -3.01 -18.45 16 7 C 0.06 1.73 4.28 86.30 0.37 2.10 16 8 C -0.13 -4.96 8.43 71.98 0.61 -4.35 16 9 C 0.06 1.85 3.48 85.55 0.30 2.15 16 10 C 0.51 22.30 6.18 87.65 0.54 22.84 16 11 O -0.55 -28.81 12.84 -3.07 -0.04 -28.85 16 12 N -0.57 -26.25 2.51 -635.32 -1.59 -27.85 16 13 C 0.27 15.31 5.14 85.63 0.44 15.75 16 14 C -0.54 -31.90 9.39 25.60 0.24 -31.66 16 15 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 16 C 0.01 0.63 5.46 84.65 0.46 1.09 16 17 N -0.93 -57.48 13.29 21.45 0.28 -57.20 16 18 Si 0.96 45.97 29.54 68.60 2.03 48.00 16 19 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 21 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 22 C 0.13 4.83 4.64 38.15 0.18 5.01 16 23 C -0.14 -4.28 8.17 22.39 0.18 -4.10 16 24 C -0.10 -2.31 10.04 22.25 0.22 -2.08 16 25 C -0.12 -2.44 10.04 22.29 0.22 -2.21 16 26 C -0.10 -2.44 10.04 22.25 0.22 -2.21 16 27 C -0.14 -4.73 9.63 22.39 0.22 -4.51 16 28 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.04 1.15 7.75 -2.39 -0.02 1.13 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 1.20 6.08 -2.39 -0.01 1.19 16 33 H 0.05 0.91 7.36 -2.39 -0.02 0.89 16 34 H 0.06 0.99 6.77 -2.39 -0.02 0.97 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.04 1.07 7.01 -2.38 -0.02 1.05 16 37 H 0.10 2.22 5.77 -2.39 -0.01 2.21 16 38 H 0.02 0.97 5.93 -2.39 -0.01 0.96 16 39 H 0.04 1.89 7.46 -2.39 -0.02 1.87 16 40 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.08 2.25 5.23 -2.39 -0.01 2.24 16 42 H 0.10 2.99 7.61 -2.39 -0.02 2.97 16 43 H 0.01 0.85 7.82 -2.39 -0.02 0.83 16 44 H 0.00 0.17 7.36 -2.38 -0.02 0.15 16 45 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 46 H 0.11 3.59 7.43 -2.91 -0.02 3.57 16 47 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 48 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 49 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 50 H 0.11 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -74.94 390.25 4.36 -70.58 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 0.90 Total: 20.91 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 5.79 Total: -7.14 kcal Atomic # 7 Polarization: -99.17 SS G_CDS: -4.32 Total: -103.49 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.04 Total: -28.85 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -74.94 4.36 -70.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595593658.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.783 kcal (2) G-P(sol) polarization free energy of solvation -74.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds