Wall clock time and date at job start Tue Mar 31 2020 12:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46969 * 2 1 4 4 N 1.46505 * 109.46792 * 180.02562 * 3 2 1 5 5 C 1.46497 * 119.99791 * 271.08812 * 4 3 2 6 6 C 1.53008 * 109.47122 * 270.00398 * 5 4 3 7 7 C 1.52999 * 109.46928 * 180.02562 * 6 5 4 8 8 N 1.46904 * 109.46652 * 179.97438 * 7 6 5 9 9 C 1.46900 * 110.99812 * 169.99902 * 8 7 6 10 10 C 1.46905 * 110.99681 * 293.94714 * 8 7 6 11 11 C 1.34771 * 119.99972 * 91.08933 * 4 3 2 12 12 O 1.21616 * 120.00017 * 184.43543 * 11 4 3 13 13 C 1.47435 * 120.00380 * 4.43681 * 11 4 3 14 14 C 1.39224 * 120.28533 * 57.23335 * 13 11 4 15 15 C 1.38217 * 120.09671 * 180.28549 * 14 13 11 16 16 C 1.38833 * 120.67327 * 359.68987 * 15 14 13 17 17 C 1.37598 * 120.56777 * 0.02562 * 16 15 14 18 18 C 1.40705 * 119.88564 * 0.02562 * 17 16 15 19 19 C 1.40883 * 120.33176 * 179.97438 * 18 17 16 20 20 H 1.08000 * 120.00142 * 216.21707 * 19 18 17 21 21 C 1.40279 * 119.99738 * 36.21318 * 19 18 17 22 22 N 1.30627 * 119.99894 * 22.33151 * 21 19 18 23 23 Si 1.86803 * 119.99828 * 202.33150 * 21 19 18 24 24 H 1.48505 * 109.46820 * 269.99857 * 23 21 19 25 25 H 1.48499 * 109.47223 * 30.00131 * 23 21 19 26 26 H 1.48505 * 109.47037 * 150.00239 * 23 21 19 27 27 H 1.09008 * 109.46971 * 59.99980 * 1 2 3 28 28 H 1.09000 * 109.47087 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47298 * 300.00097 * 1 2 3 30 30 H 1.09002 * 109.46985 * 240.00264 * 2 1 3 31 31 H 1.08996 * 109.46945 * 119.99611 * 2 1 3 32 32 H 1.08997 * 109.47190 * 59.99837 * 3 2 1 33 33 H 1.09006 * 109.46840 * 299.99571 * 3 2 1 34 34 H 1.08994 * 109.47267 * 29.99819 * 5 4 3 35 35 H 1.09001 * 109.47378 * 150.00618 * 5 4 3 36 36 H 1.09007 * 109.46367 * 299.99984 * 6 5 4 37 37 H 1.08994 * 109.47060 * 59.99638 * 6 5 4 38 38 H 1.08994 * 109.47107 * 299.99205 * 7 6 5 39 39 H 1.08998 * 109.47255 * 60.00256 * 7 6 5 40 40 H 1.08998 * 109.47376 * 59.99912 * 9 8 7 41 41 H 1.08998 * 109.47301 * 179.97438 * 9 8 7 42 42 H 1.08999 * 109.47263 * 299.99477 * 9 8 7 43 43 H 1.09000 * 109.46686 * 60.00898 * 10 8 7 44 44 H 1.09002 * 109.46652 * 180.02562 * 10 8 7 45 45 H 1.08994 * 109.47901 * 300.00256 * 10 8 7 46 46 H 1.08003 * 119.94916 * 359.97438 * 14 13 11 47 47 H 1.07999 * 119.66910 * 179.71869 * 15 14 13 48 48 H 1.07999 * 119.71062 * 180.02562 * 16 15 14 49 49 H 1.08000 * 120.05145 * 180.02562 * 17 16 15 50 50 H 0.96994 * 120.00601 * 5.51142 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2380 1.4182 1.2676 6 6 4.4932 2.8520 1.7367 7 6 5.2592 2.8266 3.0609 8 7 5.5047 4.2033 3.5110 9 6 6.0240 4.2232 4.8850 10 6 6.4149 4.9025 2.5941 11 6 4.1784 1.4648 -1.1678 12 8 5.3918 1.3834 -1.1715 13 6 3.4441 1.5880 -2.4404 14 6 2.5996 2.6726 -2.6615 15 6 1.9085 2.7812 -3.8536 16 6 2.0504 1.8193 -4.8446 17 6 2.8821 0.7392 -4.6575 18 6 3.5961 0.6046 -3.4526 19 6 4.4498 -0.4978 -3.2509 20 1 4.5329 -0.9443 -2.2710 21 6 5.1918 -1.0157 -4.3228 22 7 5.4477 -0.2669 -5.3621 23 14 5.8140 -2.7761 -4.2639 24 1 7.1619 -2.8041 -3.6412 25 1 4.8799 -3.6046 -3.4600 26 1 5.8948 -3.3189 -5.6438 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8901 34 1 3.6492 0.8900 2.0175 35 1 5.1904 0.9070 1.1271 36 1 5.0820 3.3803 0.9867 37 1 3.5408 3.3632 1.8772 38 1 4.6708 2.2983 3.8110 39 1 6.2116 2.3156 2.9199 40 1 6.9617 3.6693 4.9271 41 1 6.1973 5.2543 5.1930 42 1 5.2985 3.7608 5.5543 43 1 5.9735 4.9340 1.5979 44 1 6.5799 5.9191 2.9510 45 1 7.3668 4.3732 2.5531 46 1 2.4805 3.4276 -1.8985 47 1 1.2518 3.6230 -4.0161 48 1 1.5033 1.9198 -5.7703 49 1 2.9865 -0.0039 -5.4342 50 1 5.1948 0.6695 -5.3594 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601522648.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:23 Heat of formation + Delta-G solvation = -29.746180 kcal Electronic energy + Delta-G solvation = -27681.473968 eV Core-core repulsion = 24093.671540 eV Total energy + Delta-G solvation = -3587.802428 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.52209 -37.83874 -37.09234 -35.64753 -33.87543 -33.33233 -31.38606 -29.92642 -29.45534 -27.72285 -26.63002 -25.67705 -24.99038 -23.15280 -21.93292 -21.22348 -20.98757 -20.67324 -18.69166 -17.67816 -16.53319 -16.10690 -15.61112 -15.29942 -15.09410 -14.74252 -14.56581 -14.23401 -14.11583 -13.96137 -13.75659 -13.41955 -12.91956 -12.53922 -12.50766 -12.43496 -12.28053 -12.12357 -11.94273 -11.85917 -11.74477 -11.62648 -11.49029 -11.22458 -11.11236 -11.05644 -10.92606 -10.73590 -10.45632 -10.40779 -10.37741 -10.09331 -9.55608 -9.01715 -8.76988 -8.50543 -8.11424 -7.70508 -7.62323 -7.18618 -4.49015 2.39096 2.71460 3.17426 3.26761 3.36277 3.55670 3.70918 3.95975 4.03484 4.56459 4.88249 5.00714 5.07349 5.20598 5.23732 5.25499 5.32441 5.37104 5.44030 5.48577 5.51373 5.56649 5.64536 5.65969 5.71730 5.78815 5.86774 5.89489 5.93391 5.99030 6.06255 6.14245 6.21842 6.25460 6.36662 6.43547 6.45951 6.60954 6.75309 6.87388 6.90058 6.96935 7.15208 7.26918 7.49810 7.62219 7.71076 7.81098 8.01354 8.16210 8.21146 8.64901 8.81032 9.15856 10.07160 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.011399 B = 0.003984 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.708197 B = 7025.918052 C = 7733.781200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.141 4.141 3 C 0.109 3.891 4 N -0.621 5.621 5 C 0.119 3.881 6 C -0.130 4.130 7 C 0.058 3.942 8 N -0.548 5.548 9 C 0.025 3.975 10 C 0.020 3.980 11 C 0.587 3.413 12 O -0.537 6.537 13 C -0.244 4.244 14 C -0.053 4.053 15 C -0.251 4.251 16 C -0.078 4.078 17 C -0.201 4.201 18 C 0.131 3.869 19 C -0.500 4.500 20 H 0.074 0.926 21 C 0.041 3.959 22 N -0.793 5.793 23 Si 1.066 2.934 24 H -0.276 1.276 25 H -0.275 1.275 26 H -0.273 1.273 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.036 0.964 40 H 0.024 0.976 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.026 0.974 46 H 0.093 0.907 47 H 0.093 0.907 48 H 0.093 0.907 49 H 0.104 0.896 50 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.600 3.699 13.838 15.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.180 4.180 3 C -0.014 4.014 4 N -0.355 5.355 5 C -0.005 4.005 6 C -0.169 4.169 7 C -0.071 4.071 8 N -0.272 5.272 9 C -0.124 4.124 10 C -0.128 4.128 11 C 0.379 3.621 12 O -0.413 6.413 13 C -0.249 4.249 14 C -0.071 4.071 15 C -0.271 4.271 16 C -0.096 4.096 17 C -0.220 4.220 18 C 0.127 3.873 19 C -0.528 4.528 20 H 0.092 0.908 21 C -0.181 4.181 22 N -0.415 5.415 23 Si 0.890 3.110 24 H -0.202 1.202 25 H -0.201 1.201 26 H -0.198 1.198 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.054 0.946 40 H 0.042 0.958 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.045 0.955 46 H 0.111 0.889 47 H 0.112 0.888 48 H 0.111 0.889 49 H 0.123 0.877 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.540 2.782 12.900 13.663 hybrid contribution -0.118 0.893 0.945 1.306 sum -3.658 3.676 13.845 14.784 Atomic orbital electron populations 1.21666 0.95634 1.01496 1.01561 1.21912 0.95650 0.97752 1.02647 1.21702 0.79859 0.96841 1.03024 1.47993 1.06321 1.75745 1.05404 1.21214 0.97899 0.95873 0.85489 1.21967 1.00904 0.98043 0.95997 1.22076 0.99188 0.88573 0.97214 1.61998 1.46429 1.16370 1.02431 1.22371 0.98299 1.01755 0.89961 1.22446 0.94329 0.98356 0.97640 1.18478 0.86852 0.73560 0.83202 1.90679 1.14395 1.49090 1.87175 1.19468 1.08542 0.99807 0.97048 1.20578 0.94546 0.95806 0.96199 1.20241 1.08364 1.02222 0.96234 1.20730 0.97453 0.94457 0.96979 1.21164 1.01305 0.99819 0.99746 1.17381 0.90148 0.90049 0.89735 1.20455 1.21796 1.11896 0.98631 0.90762 1.26998 0.93813 1.06245 0.91013 1.70333 1.31749 1.09950 1.29514 0.83633 0.77152 0.72960 0.77262 1.20169 1.20061 1.19785 0.92380 0.92866 0.93185 0.90890 0.92584 0.91744 0.88934 0.91414 0.90294 0.91445 0.91270 0.90843 0.94578 0.95768 0.91522 0.91451 0.90787 0.91628 0.95543 0.88874 0.88843 0.88908 0.87742 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 37.16 0.37 -1.42 16 2 C -0.14 -2.09 6.26 -26.73 -0.17 -2.26 16 3 C 0.11 1.67 5.24 -4.04 -0.02 1.65 16 4 N -0.62 -11.19 2.47 -174.94 -0.43 -11.62 16 5 C 0.12 1.82 5.45 -4.04 -0.02 1.79 16 6 C -0.13 -1.79 5.46 -26.73 -0.15 -1.94 16 7 C 0.06 0.68 4.96 -3.82 -0.02 0.66 16 8 N -0.55 -6.35 5.02 -251.26 -1.26 -7.61 16 9 C 0.02 0.22 9.57 60.06 0.57 0.80 16 10 C 0.02 0.23 9.32 60.07 0.56 0.79 16 11 C 0.59 13.53 6.29 -12.52 -0.08 13.45 16 12 O -0.54 -14.31 16.04 5.26 0.08 -14.22 16 13 C -0.24 -5.82 4.93 -104.37 -0.51 -6.33 16 14 C -0.05 -1.11 7.54 -39.22 -0.30 -1.41 16 15 C -0.25 -5.19 10.03 -39.37 -0.39 -5.58 16 16 C -0.08 -1.68 10.01 -39.60 -0.40 -2.08 16 17 C -0.20 -4.92 8.05 -38.88 -0.31 -5.24 16 18 C 0.13 3.39 5.07 -106.54 -0.54 2.85 16 19 C -0.50 -13.49 7.81 -37.81 -0.30 -13.78 16 20 H 0.07 2.05 7.60 -52.49 -0.40 1.65 16 21 C 0.04 1.08 4.96 -17.30 -0.09 0.99 16 22 N -0.79 -21.49 12.70 55.56 0.71 -20.78 16 23 Si 1.07 22.41 29.99 -169.99 -5.10 17.31 16 24 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 25 H -0.28 -5.51 7.11 56.52 0.40 -5.10 16 26 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 27 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 33 H 0.09 1.54 4.56 -51.93 -0.24 1.30 16 34 H 0.07 0.85 8.07 -51.93 -0.42 0.43 16 35 H 0.08 1.36 7.36 -51.93 -0.38 0.98 16 36 H 0.07 1.09 6.55 -51.92 -0.34 0.75 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.76 8.06 -51.93 -0.42 0.34 16 39 H 0.04 0.45 8.12 -51.93 -0.42 0.03 16 40 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 41 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 42 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 43 H 0.07 0.93 6.47 -51.93 -0.34 0.59 16 44 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 45 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.09 1.76 7.60 -52.48 -0.40 1.36 16 47 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 48 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 49 H 0.10 2.62 7.20 -52.49 -0.38 2.24 16 50 H 0.30 8.35 6.91 -40.82 -0.28 8.07 16 LS Contribution 400.62 15.07 6.04 6.04 Total: -1.00 -29.78 400.62 -10.47 -40.25 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -8.72 Total: 7.68 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -1.79 Total: -17.05 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: -0.99 Total: -40.01 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: 0.08 Total: -14.22 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.10 Total: 17.31 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.78 -10.47 -40.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601522648.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.506 kcal (2) G-P(sol) polarization free energy of solvation -29.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds