Wall clock time and date at job start Tue Mar 31 2020 12:28:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 C 1.52995 * 109.47037 * 2 1
4 4 N 1.46897 * 109.47361 * 181.78145 * 3 2 1
5 5 C 1.46908 * 110.99829 * 290.72421 * 4 3 2
6 6 C 1.52998 * 109.46658 * 300.01977 * 5 4 3
7 7 C 1.46898 * 111.00416 * 166.76476 * 4 3 2
8 8 C 1.53005 * 109.47232 * 189.99608 * 7 4 3
9 9 H 1.08995 * 109.47364 * 295.00514 * 8 7 4
10 10 C 1.53001 * 109.46970 * 174.99887 * 8 7 4
11 11 N 1.46503 * 109.46479 * 55.00404 * 8 7 4
12 12 C 1.34780 * 119.99819 * 204.99463 * 11 8 7
13 13 O 1.21609 * 119.99692 * 0.02562 * 12 11 8
14 14 C 1.47428 * 120.00225 * 180.02562 * 12 11 8
15 15 C 1.39234 * 120.28150 * 356.05977 * 14 12 11
16 16 C 1.38217 * 120.08792 * 180.27641 * 15 14 12
17 17 C 1.38828 * 120.68126 * 359.70182 * 16 15 14
18 18 C 1.37592 * 120.56704 * 359.97438 * 17 16 15
19 19 C 1.40706 * 119.88496 * 0.02580 * 18 17 16
20 20 C 1.40888 * 120.33094 * 179.97438 * 19 18 17
21 21 H 1.08000 * 119.99959 * 146.98190 * 20 19 18
22 22 C 1.40275 * 119.99890 * 326.98182 * 20 19 18
23 23 N 1.30622 * 120.00143 * 339.77210 * 22 20 19
24 24 Si 1.86805 * 119.99730 * 159.76914 * 22 20 19
25 25 H 1.48492 * 109.47287 * 269.99993 * 24 22 20
26 26 H 1.48502 * 109.47050 * 30.00573 * 24 22 20
27 27 H 1.48497 * 109.46667 * 150.00024 * 24 22 20
28 28 H 1.09005 * 109.46992 * 300.00275 * 1 2 3
29 29 H 1.08997 * 109.46838 * 59.99730 * 1 2 3
30 30 H 1.08992 * 109.46808 * 179.97438 * 1 2 3
31 31 H 1.08996 * 109.47110 * 239.99678 * 2 1 3
32 32 H 1.09002 * 109.46682 * 119.99815 * 2 1 3
33 33 H 1.08999 * 109.47233 * 61.78072 * 3 2 1
34 34 H 1.09000 * 109.47169 * 301.78136 * 3 2 1
35 35 H 1.09000 * 109.47088 * 60.01925 * 5 4 3
36 36 H 1.08998 * 109.47009 * 180.02562 * 5 4 3
37 37 H 1.09001 * 109.46760 * 184.95666 * 6 5 4
38 38 H 1.08998 * 109.47787 * 304.95644 * 6 5 4
39 39 H 1.09004 * 109.47155 * 64.96331 * 6 5 4
40 40 H 1.09009 * 109.46997 * 70.00468 * 7 4 3
41 41 H 1.08991 * 109.47258 * 310.00192 * 7 4 3
42 42 H 1.09000 * 109.46833 * 180.02562 * 10 8 7
43 43 H 1.08995 * 109.47589 * 300.00489 * 10 8 7
44 44 H 1.08997 * 109.47017 * 60.00908 * 10 8 7
45 45 H 0.96995 * 120.00478 * 25.00197 * 11 8 7
46 46 H 1.07999 * 119.95391 * 359.97438 * 15 14 12
47 47 H 1.08008 * 119.65899 * 179.71820 * 16 15 14
48 48 H 1.07995 * 119.71557 * 180.02562 * 17 16 15
49 49 H 1.08005 * 120.06028 * 180.02562 * 18 17 16
50 50 H 0.96998 * 120.00470 * 355.68716 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5084 1.4428 -0.0431
5 6 4.0721 0.9443 1.2186
6 6 3.6145 1.8406 2.3710
7 6 4.0256 2.7810 -0.3585
8 6 5.5271 2.6943 -0.6397
9 1 6.0496 2.3895 0.2670
10 6 6.0416 4.0632 -1.0892
11 7 5.7696 1.7100 -1.6974
12 6 6.9636 1.0902 -1.7802
13 8 7.8393 1.3477 -0.9767
14 6 7.2079 0.1001 -2.8449
15 6 6.1843 -0.2596 -3.7175
16 6 6.4162 -1.1924 -4.7107
17 6 7.6673 -1.7764 -4.8559
18 6 8.7003 -1.4363 -4.0130
19 6 8.4906 -0.4893 -2.9937
20 6 9.5416 -0.1345 -2.1251
21 1 9.6040 0.8708 -1.7354
22 6 10.5069 -1.0870 -1.7663
23 7 10.2456 -2.3607 -1.8912
24 14 12.1660 -0.5338 -1.1100
25 1 13.1138 -0.3636 -2.2405
26 1 12.0099 0.7588 -0.3960
27 1 12.6933 -1.5570 -0.1718
28 1 -0.3633 0.5139 0.8900
29 1 -0.3633 0.5139 -0.8899
30 1 -0.3632 -1.0276 -0.0005
31 1 1.8934 -0.5139 -0.8899
32 1 1.8933 -0.5138 0.8900
33 1 1.7030 1.9470 0.9055
34 1 1.6509 1.9654 -0.8736
35 1 3.7281 -0.0753 1.3926
36 1 5.1605 0.9555 1.1598
37 1 4.1022 1.5244 3.2930
38 1 3.8816 2.8751 2.1550
39 1 2.5334 1.7610 2.4861
40 1 3.8523 3.4462 0.4876
41 1 3.5131 3.1706 -1.2379
42 1 7.1112 4.0013 -1.2900
43 1 5.5192 4.3681 -1.9959
44 1 5.8612 4.7955 -0.3023
45 1 5.0710 1.5045 -2.3381
46 1 5.2064 0.1873 -3.6151
47 1 5.6159 -1.4697 -5.3809
48 1 7.8313 -2.5033 -5.6375
49 1 9.6704 -1.8954 -4.1336
50 1 9.3633 -2.6496 -2.1723
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000601591130.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:28:46
Heat of formation + Delta-G solvation = -30.029983 kcal
Electronic energy + Delta-G solvation = -27710.815176 eV
Core-core repulsion = 24123.000442 eV
Total energy + Delta-G solvation = -3587.814734 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 318.205 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-39.42107 -38.39249 -36.90496 -34.89376 -33.89207 -33.18971 -31.07550 -30.00764
-29.50378 -28.90507 -26.76372 -25.17442 -24.88159 -23.16358 -22.25824 -21.04014
-20.48264 -19.65167 -19.36177 -17.94754 -16.40328 -16.32460 -16.04373 -15.30478
-14.71653 -14.53819 -14.35332 -14.00885 -13.98815 -13.78244 -13.58492 -13.40135
-13.04364 -12.73556 -12.52367 -12.42863 -12.22063 -12.15706 -11.92765 -11.90089
-11.71283 -11.56154 -11.40720 -11.15964 -11.09551 -10.96752 -10.81026 -10.66849
-10.62686 -10.34251 -10.29719 -10.05830 -9.54693 -9.00668 -8.38852 -8.24568
-8.20730 -7.69336 -7.52652 -7.08211 -4.38383 2.34939 2.81141 3.22800
3.35052 3.44474 3.78133 4.08365 4.11790 4.19421 4.71354 4.72531
4.87561 4.92518 5.07209 5.12659 5.23153 5.29950 5.34061 5.41534
5.43584 5.50266 5.54453 5.59927 5.65176 5.71028 5.83369 5.87756
5.90161 5.96417 5.97626 6.06770 6.10104 6.14138 6.20475 6.28154
6.34936 6.43980 6.63734 6.80747 7.03699 7.08656 7.09818 7.33945
7.38474 7.58967 7.69338 7.81402 7.97585 8.18737 8.30240 8.55674
8.82841 8.94665 9.52472 10.10060
Molecular weight = 318.20amu
Principal moments of inertia in cm(-1)
A = 0.012885 B = 0.003872 C = 0.003473
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2172.598780 B = 7229.751677 C = 8060.687029
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.121 4.121
3 C 0.051 3.949
4 N -0.528 5.528
5 C 0.045 3.955
6 C -0.192 4.192
7 C 0.044 3.956
8 C 0.151 3.849
9 H 0.082 0.918
10 C -0.161 4.161
11 N -0.727 5.727
12 C 0.566 3.434
13 O -0.544 6.544
14 C -0.262 4.262
15 C -0.040 4.040
16 C -0.262 4.262
17 C -0.075 4.075
18 C -0.206 4.206
19 C 0.121 3.879
20 C -0.468 4.468
21 H 0.106 0.894
22 C 0.031 3.969
23 N -0.795 5.795
24 Si 1.072 2.928
25 H -0.276 1.276
26 H -0.273 1.273
27 H -0.277 1.277
28 H 0.049 0.951
29 H 0.053 0.947
30 H 0.055 0.945
31 H 0.072 0.928
32 H 0.060 0.940
33 H 0.036 0.964
34 H 0.069 0.931
35 H 0.075 0.925
36 H 0.082 0.918
37 H 0.060 0.940
38 H 0.056 0.944
39 H 0.054 0.946
40 H 0.047 0.953
41 H 0.075 0.925
42 H 0.066 0.934
43 H 0.052 0.948
44 H 0.055 0.945
45 H 0.393 0.607
46 H 0.092 0.908
47 H 0.091 0.909
48 H 0.091 0.909
49 H 0.105 0.895
50 H 0.299 0.701
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.446 7.461 4.144 16.779
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.159 4.159
3 C -0.077 4.077
4 N -0.251 5.251
5 C -0.082 4.082
6 C -0.250 4.250
7 C -0.084 4.084
8 C 0.045 3.955
9 H 0.100 0.900
10 C -0.220 4.220
11 N -0.380 5.380
12 C 0.360 3.640
13 O -0.423 6.423
14 C -0.267 4.267
15 C -0.059 4.059
16 C -0.282 4.282
17 C -0.094 4.094
18 C -0.225 4.225
19 C 0.117 3.883
20 C -0.495 4.495
21 H 0.124 0.876
22 C -0.190 4.190
23 N -0.419 5.419
24 Si 0.896 3.104
25 H -0.201 1.201
26 H -0.198 1.198
27 H -0.202 1.202
28 H 0.068 0.932
29 H 0.072 0.928
30 H 0.074 0.926
31 H 0.091 0.909
32 H 0.079 0.921
33 H 0.054 0.946
34 H 0.088 0.912
35 H 0.094 0.906
36 H 0.100 0.900
37 H 0.079 0.921
38 H 0.075 0.925
39 H 0.073 0.927
40 H 0.065 0.935
41 H 0.093 0.907
42 H 0.085 0.915
43 H 0.072 0.928
44 H 0.074 0.926
45 H 0.227 0.773
46 H 0.110 0.890
47 H 0.109 0.891
48 H 0.109 0.891
49 H 0.123 0.877
50 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges -12.197 6.718 4.884 14.756
hybrid contribution -2.335 0.877 -0.296 2.512
sum -14.532 7.595 4.588 17.027
Atomic orbital electron populations
1.21731 0.95939 1.01641 1.01443 1.21510 0.94927 0.96536 1.02935
1.22196 0.87701 0.97289 1.00479 1.62153 1.06181 1.23900 1.32843
1.22212 1.01015 0.98492 0.86529 1.22416 1.01409 1.01067 1.00141
1.22494 0.95608 0.89888 1.00450 1.20691 0.93370 0.88840 0.92633
0.90036 1.22161 1.02655 0.96390 1.00811 1.45802 1.16065 1.43417
1.32729 1.18319 0.80807 0.80295 0.84602 1.90657 1.43660 1.64955
1.43037 1.19422 0.94976 1.09814 1.02476 1.20730 0.96004 0.95312
0.93837 1.20225 0.97264 1.06240 1.04460 1.20720 0.93615 0.97607
0.97489 1.21227 0.98222 1.04809 0.98216 1.17503 0.90497 0.89273
0.91043 1.21210 1.04942 1.01426 1.21886 0.87605 1.27233 1.04666
0.92975 0.94158 1.70358 1.26119 1.16585 1.28804 0.83535 0.73078
0.76527 0.77308 1.20131 1.19804 1.20227 0.93152 0.92788 0.92635
0.90933 0.92095 0.94605 0.91242 0.90638 0.89972 0.92079 0.92459
0.92678 0.93537 0.90680 0.91542 0.92845 0.92623 0.77251 0.89015
0.89092 0.89080 0.87679 0.88767
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16
2 C -0.12 -1.19 5.89 -26.73 -0.16 -1.35 16
3 C 0.05 0.51 4.77 -3.83 -0.02 0.49 16
4 N -0.53 -6.36 4.41 -234.63 -1.03 -7.40 16
5 C 0.05 0.57 5.68 -3.82 -0.02 0.55 16
6 C -0.19 -1.96 9.23 37.16 0.34 -1.62 16
7 C 0.04 0.51 4.34 -3.82 -0.02 0.49 16
8 C 0.15 2.24 2.36 -67.93 -0.16 2.08 16
9 H 0.08 1.41 6.15 -51.93 -0.32 1.09 16
10 C -0.16 -2.21 9.48 37.16 0.35 -1.85 16
11 N -0.73 -12.85 4.75 -54.88 -0.26 -13.12 16
12 C 0.57 13.08 7.69 -12.52 -0.10 12.98 16
13 O -0.54 -14.28 13.21 5.27 0.07 -14.22 16
14 C -0.26 -6.44 5.92 -104.37 -0.62 -7.06 16
15 C -0.04 -0.86 9.52 -39.22 -0.37 -1.23 16
16 C -0.26 -5.63 10.03 -39.37 -0.39 -6.02 16
17 C -0.08 -1.71 10.01 -39.60 -0.40 -2.10 16
18 C -0.21 -5.21 7.86 -38.89 -0.31 -5.52 16
19 C 0.12 3.27 5.19 -106.54 -0.55 2.71 16
20 C -0.47 -12.99 7.69 -37.81 -0.29 -13.28 16
21 H 0.11 3.08 5.88 -52.49 -0.31 2.77 16
22 C 0.03 0.82 5.02 -17.30 -0.09 0.74 16
23 N -0.80 -21.59 12.56 55.56 0.70 -20.90 16
24 Si 1.07 22.90 29.98 -169.99 -5.10 17.80 16
25 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16
26 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16
27 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16
28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16
29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16
30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16
31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16
32 H 0.06 0.63 6.74 -51.93 -0.35 0.28 16
33 H 0.04 0.34 5.96 -51.93 -0.31 0.03 16
34 H 0.07 0.65 7.86 -51.93 -0.41 0.25 16
35 H 0.08 0.94 6.63 -51.93 -0.34 0.60 16
36 H 0.08 1.26 6.40 -51.93 -0.33 0.92 16
37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
38 H 0.06 0.58 6.15 -51.93 -0.32 0.26 16
39 H 0.05 0.52 6.48 -51.93 -0.34 0.18 16
40 H 0.05 0.49 6.04 -51.92 -0.31 0.17 16
41 H 0.07 0.79 7.89 -51.93 -0.41 0.38 16
42 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16
43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
44 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
45 H 0.39 6.37 6.65 -40.82 -0.27 6.10 16
46 H 0.09 1.68 6.41 -52.49 -0.34 1.34 16
47 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16
48 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16
49 H 0.11 2.72 6.88 -52.48 -0.36 2.36 16
50 H 0.30 8.31 6.53 -40.82 -0.27 8.05 16
LS Contribution 386.75 15.07 5.83 5.83
Total: -1.00 -29.42 386.75 -10.23 -39.66
By element:
Atomic # 1 Polarization: 21.18 SS G_CDS: -8.01 Total: 13.17 kcal
Atomic # 6 Polarization: -18.41 SS G_CDS: -2.43 Total: -20.83 kcal
Atomic # 7 Polarization: -40.81 SS G_CDS: -0.60 Total: -41.41 kcal
Atomic # 8 Polarization: -14.28 SS G_CDS: 0.07 Total: -14.22 kcal
Atomic # 14 Polarization: 22.90 SS G_CDS: -5.10 Total: 17.80 kcal
Total LS contribution 5.83 Total: 5.83 kcal
Total: -29.42 -10.23 -39.66 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601591130.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 9.627 kcal
(2) G-P(sol) polarization free energy of solvation -29.423 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.796 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.234 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.657 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.030 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds