Wall clock time and date at job start Tue Mar 31 2020 12:28:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 C 1.52995 * 109.47037 * 2 1
4 4 N 1.46897 * 109.47361 * 181.78145 * 3 2 1
5 5 C 1.46908 * 110.99829 * 290.72421 * 4 3 2
6 6 C 1.52998 * 109.46658 * 300.01977 * 5 4 3
7 7 C 1.46898 * 111.00416 * 166.76476 * 4 3 2
8 8 C 1.53005 * 109.47232 * 189.99608 * 7 4 3
9 9 H 1.08995 * 109.47364 * 295.00514 * 8 7 4
10 10 C 1.53001 * 109.46970 * 174.99887 * 8 7 4
11 11 N 1.46503 * 109.46479 * 55.00404 * 8 7 4
12 12 C 1.34780 * 119.99819 * 204.99463 * 11 8 7
13 13 O 1.21609 * 119.99692 * 0.02562 * 12 11 8
14 14 C 1.47428 * 120.00225 * 180.02562 * 12 11 8
15 15 C 1.39234 * 120.28150 * 356.05977 * 14 12 11
16 16 C 1.38217 * 120.08792 * 180.27641 * 15 14 12
17 17 C 1.38828 * 120.68126 * 359.70182 * 16 15 14
18 18 C 1.37592 * 120.56704 * 359.97438 * 17 16 15
19 19 C 1.40706 * 119.88496 * 0.02580 * 18 17 16
20 20 C 1.40888 * 120.33094 * 179.97438 * 19 18 17
21 21 H 1.08000 * 119.99959 * 146.98190 * 20 19 18
22 22 C 1.40275 * 119.99890 * 326.98182 * 20 19 18
23 23 N 1.30622 * 120.00143 * 339.77210 * 22 20 19
24 24 Si 1.86805 * 119.99730 * 159.76914 * 22 20 19
25 25 H 1.48492 * 109.47287 * 269.99993 * 24 22 20
26 26 H 1.48502 * 109.47050 * 30.00573 * 24 22 20
27 27 H 1.48497 * 109.46667 * 150.00024 * 24 22 20
28 28 H 1.09005 * 109.46992 * 300.00275 * 1 2 3
29 29 H 1.08997 * 109.46838 * 59.99730 * 1 2 3
30 30 H 1.08992 * 109.46808 * 179.97438 * 1 2 3
31 31 H 1.08996 * 109.47110 * 239.99678 * 2 1 3
32 32 H 1.09002 * 109.46682 * 119.99815 * 2 1 3
33 33 H 1.08999 * 109.47233 * 61.78072 * 3 2 1
34 34 H 1.09000 * 109.47169 * 301.78136 * 3 2 1
35 35 H 1.09000 * 109.47088 * 60.01925 * 5 4 3
36 36 H 1.08998 * 109.47009 * 180.02562 * 5 4 3
37 37 H 1.09001 * 109.46760 * 184.95666 * 6 5 4
38 38 H 1.08998 * 109.47787 * 304.95644 * 6 5 4
39 39 H 1.09004 * 109.47155 * 64.96331 * 6 5 4
40 40 H 1.09009 * 109.46997 * 70.00468 * 7 4 3
41 41 H 1.08991 * 109.47258 * 310.00192 * 7 4 3
42 42 H 1.09000 * 109.46833 * 180.02562 * 10 8 7
43 43 H 1.08995 * 109.47589 * 300.00489 * 10 8 7
44 44 H 1.08997 * 109.47017 * 60.00908 * 10 8 7
45 45 H 0.96995 * 120.00478 * 25.00197 * 11 8 7
46 46 H 1.07999 * 119.95391 * 359.97438 * 15 14 12
47 47 H 1.08008 * 119.65899 * 179.71820 * 16 15 14
48 48 H 1.07995 * 119.71557 * 180.02562 * 17 16 15
49 49 H 1.08005 * 120.06028 * 180.02562 * 18 17 16
50 50 H 0.96998 * 120.00470 * 355.68716 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5084 1.4428 -0.0431
5 6 4.0721 0.9443 1.2186
6 6 3.6145 1.8406 2.3710
7 6 4.0256 2.7810 -0.3585
8 6 5.5271 2.6943 -0.6397
9 1 6.0496 2.3895 0.2670
10 6 6.0416 4.0632 -1.0892
11 7 5.7696 1.7100 -1.6974
12 6 6.9636 1.0902 -1.7802
13 8 7.8393 1.3477 -0.9767
14 6 7.2079 0.1001 -2.8449
15 6 6.1843 -0.2596 -3.7175
16 6 6.4162 -1.1924 -4.7107
17 6 7.6673 -1.7764 -4.8559
18 6 8.7003 -1.4363 -4.0130
19 6 8.4906 -0.4893 -2.9937
20 6 9.5416 -0.1345 -2.1251
21 1 9.6040 0.8708 -1.7354
22 6 10.5069 -1.0870 -1.7663
23 7 10.2456 -2.3607 -1.8912
24 14 12.1660 -0.5338 -1.1100
25 1 13.1138 -0.3636 -2.2405
26 1 12.0099 0.7588 -0.3960
27 1 12.6933 -1.5570 -0.1718
28 1 -0.3633 0.5139 0.8900
29 1 -0.3633 0.5139 -0.8899
30 1 -0.3632 -1.0276 -0.0005
31 1 1.8934 -0.5139 -0.8899
32 1 1.8933 -0.5138 0.8900
33 1 1.7030 1.9470 0.9055
34 1 1.6509 1.9654 -0.8736
35 1 3.7281 -0.0753 1.3926
36 1 5.1605 0.9555 1.1598
37 1 4.1022 1.5244 3.2930
38 1 3.8816 2.8751 2.1550
39 1 2.5334 1.7610 2.4861
40 1 3.8523 3.4462 0.4876
41 1 3.5131 3.1706 -1.2379
42 1 7.1112 4.0013 -1.2900
43 1 5.5192 4.3681 -1.9959
44 1 5.8612 4.7955 -0.3023
45 1 5.0710 1.5045 -2.3381
46 1 5.2064 0.1873 -3.6151
47 1 5.6159 -1.4697 -5.3809
48 1 7.8313 -2.5033 -5.6375
49 1 9.6704 -1.8954 -4.1336
50 1 9.3633 -2.6496 -2.1723
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000601591130.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:28:45
Heat of formation + Delta-G solvation = -47.333115 kcal
Electronic energy + Delta-G solvation = -27711.565496 eV
Core-core repulsion = 24123.000442 eV
Total energy + Delta-G solvation = -3588.565054 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 318.205 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-40.93366 -39.71080 -38.61664 -36.32235 -35.72594 -34.13293 -32.63290 -31.44761
-30.97831 -30.48832 -27.64532 -27.09481 -25.77059 -24.60835 -23.55229 -22.78968
-21.70712 -21.10156 -20.65054 -19.82538 -18.07207 -17.37936 -17.08760 -16.58081
-16.46128 -15.97032 -15.78545 -15.57809 -15.42032 -15.17514 -15.01652 -14.48563
-14.34534 -14.05969 -13.98644 -13.82893 -13.61471 -13.30652 -13.02006 -12.97917
-12.85369 -12.73461 -12.66974 -12.60884 -12.45350 -12.34931 -12.08765 -12.05022
-11.91581 -11.79358 -11.56585 -11.41437 -11.23449 -10.92936 -10.24631 -9.83730
-9.54437 -9.45659 -9.16125 -9.07443 -6.42290 0.47108 0.94020 1.45405
1.62388 1.76345 2.31042 2.35593 2.54304 2.77627 2.96358 3.61994
3.77815 3.95010 4.09843 4.18665 4.24635 4.27427 4.31575 4.32333
4.40245 4.43599 4.50473 4.52912 4.56770 4.66818 4.70924 4.75895
4.79550 4.83908 4.90090 4.92400 5.03575 5.05880 5.13179 5.19577
5.21409 5.27498 5.27943 5.34377 5.47023 5.47961 5.67945 5.74693
5.79612 5.95017 6.01732 6.14612 6.22497 6.25198 6.37915 6.77765
6.91115 7.04622 7.76582 8.05985
Molecular weight = 318.20amu
Principal moments of inertia in cm(-1)
A = 0.012885 B = 0.003872 C = 0.003473
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2172.598780 B = 7229.751677 C = 8060.687029
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.120 4.120
3 C 0.055 3.945
4 N -0.544 5.544
5 C 0.048 3.952
6 C -0.182 4.182
7 C 0.054 3.946
8 C 0.147 3.853
9 H 0.051 0.949
10 C -0.154 4.154
11 N -0.704 5.704
12 C 0.560 3.440
13 O -0.585 6.585
14 C -0.280 4.280
15 C -0.038 4.038
16 C -0.247 4.247
17 C -0.073 4.073
18 C -0.230 4.230
19 C 0.097 3.903
20 C -0.511 4.511
21 H 0.081 0.919
22 C -0.003 4.003
23 N -0.818 5.818
24 Si 1.117 2.883
25 H -0.255 1.255
26 H -0.275 1.275
27 H -0.267 1.267
28 H 0.058 0.942
29 H 0.060 0.940
30 H 0.055 0.945
31 H 0.055 0.945
32 H 0.051 0.949
33 H 0.047 0.953
34 H 0.082 0.918
35 H 0.070 0.930
36 H 0.044 0.956
37 H 0.060 0.940
38 H 0.060 0.940
39 H 0.069 0.931
40 H 0.066 0.934
41 H 0.097 0.903
42 H 0.028 0.972
43 H 0.072 0.928
44 H 0.083 0.917
45 H 0.404 0.596
46 H 0.132 0.868
47 H 0.134 0.866
48 H 0.122 0.878
49 H 0.088 0.912
50 H 0.282 0.718
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.797 8.623 3.233 20.038
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.158 4.158
3 C -0.072 4.072
4 N -0.268 5.268
5 C -0.080 4.080
6 C -0.241 4.241
7 C -0.074 4.074
8 C 0.042 3.958
9 H 0.070 0.930
10 C -0.213 4.213
11 N -0.357 5.357
12 C 0.353 3.647
13 O -0.467 6.467
14 C -0.285 4.285
15 C -0.057 4.057
16 C -0.266 4.266
17 C -0.091 4.091
18 C -0.249 4.249
19 C 0.093 3.907
20 C -0.539 4.539
21 H 0.099 0.901
22 C -0.218 4.218
23 N -0.442 5.442
24 Si 0.935 3.065
25 H -0.180 1.180
26 H -0.200 1.200
27 H -0.192 1.192
28 H 0.077 0.923
29 H 0.079 0.921
30 H 0.074 0.926
31 H 0.074 0.926
32 H 0.069 0.931
33 H 0.066 0.934
34 H 0.101 0.899
35 H 0.088 0.912
36 H 0.063 0.937
37 H 0.079 0.921
38 H 0.079 0.921
39 H 0.088 0.912
40 H 0.084 0.916
41 H 0.116 0.884
42 H 0.047 0.953
43 H 0.091 0.909
44 H 0.102 0.898
45 H 0.240 0.760
46 H 0.149 0.851
47 H 0.152 0.848
48 H 0.140 0.860
49 H 0.106 0.894
50 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -15.611 7.891 3.947 17.932
hybrid contribution -1.577 0.548 -0.119 1.674
sum -17.188 8.439 3.828 19.527
Atomic orbital electron populations
1.21688 0.94330 1.02003 1.02226 1.21483 0.96280 0.96367 1.01645
1.22232 0.85957 0.97430 1.01630 1.62119 1.07755 1.24264 1.32616
1.22055 0.98761 0.99048 0.88102 1.22315 1.02209 1.00530 0.98999
1.22414 0.92651 0.90180 1.02144 1.20893 0.95995 0.88435 0.90462
0.93038 1.22084 1.00280 0.96222 1.02723 1.45575 1.14281 1.42692
1.33117 1.18335 0.81935 0.80448 0.83999 1.90639 1.45415 1.66278
1.44371 1.19863 0.95183 1.09944 1.03497 1.21119 0.96782 0.95018
0.92777 1.20774 0.97596 1.04291 1.03930 1.21122 0.93347 0.97536
0.97117 1.21185 0.98727 1.05726 0.99278 1.17889 0.91463 0.90135
0.91254 1.21122 1.07492 1.00878 1.24384 0.90149 1.28449 1.07373
0.92491 0.93491 1.70469 1.25211 1.16966 1.31586 0.82996 0.69866
0.76073 0.77568 1.17972 1.20027 1.19195 0.92270 0.92054 0.92568
0.92618 0.93061 0.93442 0.89910 0.91184 0.93707 0.92109 0.92078
0.91169 0.91605 0.88439 0.95296 0.90884 0.89812 0.75985 0.85081
0.84837 0.85968 0.89412 0.90553
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.93 9.91 71.98 0.71 -1.21 16
2 C -0.12 -2.11 5.89 30.60 0.18 -1.93 16
3 C 0.05 0.91 4.77 86.30 0.41 1.33 16
4 N -0.54 -12.03 4.41 -896.23 -3.95 -15.98 16
5 C 0.05 1.20 5.68 86.30 0.49 1.69 16
6 C -0.18 -3.43 9.23 71.98 0.66 -2.76 16
7 C 0.05 1.10 4.34 86.31 0.37 1.47 16
8 C 0.15 4.29 2.36 44.99 0.11 4.39 16
9 H 0.05 1.85 6.15 -2.39 -0.01 1.83 16
10 C -0.15 -4.04 9.48 71.98 0.68 -3.36 16
11 N -0.70 -24.55 4.75 -445.78 -2.12 -26.67 16
12 C 0.56 26.71 7.69 86.66 0.67 27.38 16
13 O -0.58 -32.73 13.21 -4.06 -0.05 -32.79 16
14 C -0.28 -13.97 5.92 -19.70 -0.12 -14.09 16
15 C -0.04 -1.56 9.52 22.50 0.21 -1.35 16
16 C -0.25 -9.73 10.03 22.41 0.22 -9.50 16
17 C -0.07 -3.17 10.01 22.26 0.22 -2.95 16
18 C -0.23 -11.98 7.86 22.72 0.18 -11.80 16
19 C 0.10 5.43 5.19 -21.11 -0.11 5.32 16
20 C -0.51 -30.33 7.69 23.41 0.18 -30.15 16
21 H 0.08 5.07 5.88 -2.91 -0.02 5.05 16
22 C 0.00 -0.16 5.02 85.37 0.43 0.27 16
23 N -0.82 -46.89 12.56 21.88 0.27 -46.62 16
24 Si 1.12 48.49 29.98 68.60 2.06 50.55 16
25 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16
26 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16
27 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16
28 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16
29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16
30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16
31 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16
32 H 0.05 0.99 6.74 -2.39 -0.02 0.97 16
33 H 0.05 0.71 5.96 -2.39 -0.01 0.69 16
34 H 0.08 1.20 7.86 -2.39 -0.02 1.18 16
35 H 0.07 1.77 6.63 -2.39 -0.02 1.75 16
36 H 0.04 1.44 6.40 -2.39 -0.02 1.42 16
37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16
38 H 0.06 1.10 6.15 -2.39 -0.01 1.09 16
39 H 0.07 1.12 6.48 -2.38 -0.02 1.10 16
40 H 0.07 1.14 6.04 -2.38 -0.01 1.13 16
41 H 0.10 1.61 7.89 -2.39 -0.02 1.59 16
42 H 0.03 0.96 8.14 -2.39 -0.02 0.95 16
43 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16
44 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16
45 H 0.40 12.16 6.65 -92.71 -0.62 11.54 16
46 H 0.13 4.26 6.41 -2.91 -0.02 4.24 16
47 H 0.13 4.21 8.06 -2.91 -0.02 4.18 16
48 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16
49 H 0.09 4.79 6.88 -2.91 -0.02 4.77 16
50 H 0.28 16.71 6.53 -92.71 -0.61 16.11 16
Total: -1.00 -70.10 386.75 2.20 -67.90
By element:
Atomic # 1 Polarization: 40.38 SS G_CDS: 0.48 Total: 40.86 kcal
Atomic # 6 Polarization: -42.77 SS G_CDS: 5.51 Total: -37.25 kcal
Atomic # 7 Polarization: -83.47 SS G_CDS: -5.80 Total: -89.27 kcal
Atomic # 8 Polarization: -32.73 SS G_CDS: -0.05 Total: -32.79 kcal
Atomic # 14 Polarization: 48.49 SS G_CDS: 2.06 Total: 50.55 kcal
Total: -70.10 2.20 -67.90 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601591130.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.567 kcal
(2) G-P(sol) polarization free energy of solvation -70.102 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.535 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.202 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.900 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.333 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds